Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00027
         (706 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    29   0.043
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          23   3.7  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    23   3.7  
AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synth...    22   4.9  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   6.5  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   6.5  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   6.5  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   8.6  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 29.1 bits (62), Expect = 0.043
 Identities = 17/51 (33%), Positives = 22/51 (43%)
 Frame = +2

Query: 311 LSWDIHYWIGRESTQDESGAAAISTLAWTTSSGAQRSSTERPWVTKVLCSY 463
           LSW + +WI  E+T         + L  TT S   RSS  R    K +  Y
Sbjct: 258 LSW-VSFWINHEATSARVALGITTVLTMTTISTGVRSSLPRISYVKAIDIY 307


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = -3

Query: 86  GRRPCP-DGSQENKKETRKNDLH 21
           G R C  D S+E KK+ R + LH
Sbjct: 249 GERSCSRDRSREYKKDRRYDQLH 271


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 13/50 (26%), Positives = 19/50 (38%)
 Frame = +3

Query: 216 FEPIPVAQKDIGKSTKEIHTSFYGRPRTVATIYHGISTTGSVGSRRKTSQ 365
           F P     KDI +   E++       R    IY  I T   + +R +  Q
Sbjct: 286 FRPSGTVLKDINRQVDELNFDIQDLERWRDRIYEAIHTGSVINTRGERIQ 335


>AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synthase
           16 kDa proteolipidsubunit protein.
          Length = 156

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = -3

Query: 212 LYSPYLHTGCSADIGKSRMDFGFVTGV 132
           L+  ++H G    +G S +  GF  G+
Sbjct: 87  LFKGFVHLGAGLAVGFSGLAAGFAIGI 113


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +2

Query: 179 QNSRCANMENTE 214
           +NSRCAN +N +
Sbjct: 410 RNSRCANFDNQD 421


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = +1

Query: 220 NQYPLLRRT*ENL 258
           +QYPL+RRT E++
Sbjct: 556 DQYPLMRRTMESV 568


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = +1

Query: 220 NQYPLLRRT*ENL 258
           +QYPL+RRT E++
Sbjct: 524 DQYPLMRRTMESV 536


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 10/36 (27%), Positives = 16/36 (44%)
 Frame = +1

Query: 484 TYLEGGNPSVLTTSSRTREPRNECSRSKGSEMSALD 591
           TY+  GN   L TS    +  ++   S   ++  LD
Sbjct: 548 TYINSGNKISLATSKSFIKANSQTEVSNSKKLDRLD 583


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,303
Number of Sequences: 438
Number of extensions: 4778
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)