Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00026
(728 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1127 + 8930593-8932681,8932812-8933401 85 7e-17
10_08_0520 - 18495118-18498237 84 1e-16
05_04_0118 - 18162934-18162982,18163246-18163357,18163583-18163622 29 3.8
03_06_0680 - 35497868-35497884,35498058-35501961 29 3.8
04_03_0793 + 19699355-19699472,19700245-19700633,19700824-197010... 29 5.0
09_06_0231 + 21733151-21734905 28 6.6
02_04_0022 - 18992517-18993033,18993119-18993360,18993535-189939... 28 6.6
12_02_1180 + 26727171-26727239,26728782-26729642 28 8.7
09_02_0338 + 7426999-7428322,7428390-7428646 28 8.7
>01_01_1127 + 8930593-8932681,8932812-8933401
Length = 892
Score = 84.6 bits (200), Expect = 7e-17
Identities = 38/73 (52%), Positives = 53/73 (72%)
Frame = +2
Query: 509 KGCEVNPSSEELWLEAARLQPIDTARAVIAHAARNLPHSVRIWVKAADLEQEAKAKRRVF 688
+GCE P++E++WL+A RL D A+AVIA + +P+SV++W++AA LE K RV
Sbjct: 330 RGCEECPTNEDVWLKACRLASPDEAKAVIARGVKEIPNSVKLWLQAAKLETSDLNKSRVL 389
Query: 689 RKALEHIPNSVRL 727
RK LEHIP+SVRL
Sbjct: 390 RKGLEHIPDSVRL 402
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/52 (40%), Positives = 28/52 (53%)
Frame = +2
Query: 506 NKGCEVNPSSEELWLEAARLQPIDTARAVIAHAARNLPHSVRIWVKAADLEQ 661
++ E P ELWL ARL+ D A+ V+ A LP IW+ AA LE+
Sbjct: 420 HRAVECCPFHLELWLALARLETYDQAKKVLNKAKEKLPKEPAIWIMAAKLEE 471
Score = 40.7 bits (91), Expect = 0.001
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Frame = +2
Query: 518 EVNPSSEELWLEAARLQPI----DTARAVIAHAARNLPHSVRIWVKAADLEQEAKAKRRV 685
+ NP W+ AARL+ + A+ +I P + +W+KA L +AK V
Sbjct: 299 QTNPKHPPGWIAAARLEEVAGKLQVAQQLIQRGCEECPTNEDVWLKACRLASPDEAK-AV 357
Query: 686 FRKALEHIPNSVRL 727
+ ++ IPNSV+L
Sbjct: 358 IARGVKEIPNSVKL 371
Score = 39.5 bits (88), Expect = 0.003
Identities = 23/68 (33%), Positives = 32/68 (47%)
Frame = +2
Query: 509 KGCEVNPSSEELWLEAARLQPIDTARAVIAHAARNLPHSVRIWVKAADLEQEAKAKRRVF 688
KG E P S LW L + AR ++ A P + +W+ A LE +AK +V
Sbjct: 391 KGLEHIPDSVRLWKSVVELANEEDARLLLHRAVECCPFHLELWLALARLETYDQAK-KVL 449
Query: 689 RKALEHIP 712
KA E +P
Sbjct: 450 NKAKEKLP 457
Score = 35.9 bits (79), Expect = 0.033
Identities = 16/23 (69%), Positives = 19/23 (82%)
Frame = +3
Query: 444 WIASARLEEVTGKVQTARNLIIR 512
WIA+ARLEEV GK+Q A+ LI R
Sbjct: 308 WIAAARLEEVAGKLQVAQQLIQR 330
Score = 32.3 bits (70), Expect = 0.41
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Frame = +2
Query: 524 NPSSEELWLEAARLQ----PIDTARAVIAHAARNLPHSVRIWVKAADL--EQEAKAKRRV 685
NP++ ELWL A R + A A++A A + P S +W A ++ + KAK
Sbjct: 717 NPATPELWLAAVRAELRHRNKKEADALLAKALQECPTSGILWAAAIEMVPRPQRKAKSSD 776
Query: 686 FRKALEHIPNSV 721
K +H P+ +
Sbjct: 777 AIKRCDHDPHVI 788
Score = 29.5 bits (63), Expect = 2.9
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +3
Query: 444 WIASARLEEVTGKVQTARNLIIRDVKSIR 530
WI +A+LEE G ++ +I R +K+++
Sbjct: 463 WIMAAKLEEANGNTESVNEVIERSIKTLQ 491
Score = 29.5 bits (63), Expect = 2.9
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Frame = +2
Query: 506 NKGCEVNPSSEELWLEAARLQ----PIDTARAVIAHAARNLPHSVRIWVKAADLEQEAKA 673
+K N +E LWL A+ + + A+ ++ A LP+S IW+ A LE E
Sbjct: 594 SKATTYNRHAEVLWLMYAKEKWLAGDVPAAQTILQEAYAYLPNSEEIWLAAFKLEFENNE 653
Query: 674 KRR 682
R
Sbjct: 654 PER 656
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 551 EAARLQPIDTARAVIAHAARNLPHSVRIWVKAADLEQ 661
E + ++TA A+ AH IW+KAA LE+
Sbjct: 545 ECKKRGSVETAPAIYAHVLSVFKFKKSIWLKAAQLEK 581
>10_08_0520 - 18495118-18498237
Length = 1039
Score = 84.2 bits (199), Expect = 1e-16
Identities = 38/73 (52%), Positives = 53/73 (72%)
Frame = +2
Query: 509 KGCEVNPSSEELWLEAARLQPIDTARAVIAHAARNLPHSVRIWVKAADLEQEAKAKRRVF 688
+GCE P++E++W+EA RL D A+AVIA + +P+SV++W++AA LE K RV
Sbjct: 425 RGCEECPTNEDVWVEACRLASPDEAKAVIARGVKAIPNSVKLWLQAAKLETSDLNKSRVL 484
Query: 689 RKALEHIPNSVRL 727
RK LEHIP+SVRL
Sbjct: 485 RKGLEHIPDSVRL 497
Score = 44.4 bits (100), Expect = 9e-05
Identities = 25/66 (37%), Positives = 33/66 (50%)
Frame = +2
Query: 506 NKGCEVNPSSEELWLEAARLQPIDTARAVIAHAARNLPHSVRIWVKAADLEQEAKAKRRV 685
++ E P ELWL ARL+ D A+ V+ A LP IW+ AA LE EA +
Sbjct: 515 HRAVECCPLHVELWLALARLETYDQAKKVLNKAREKLPKEPAIWITAAKLE-EANGNTQS 573
Query: 686 FRKALE 703
K +E
Sbjct: 574 VIKVIE 579
Score = 41.1 bits (92), Expect = 9e-04
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Frame = +2
Query: 518 EVNPSSEELWLEAARLQPI----DTARAVIAHAARNLPHSVRIWVKAADLEQEAKAKRRV 685
+ NP W+ AARL+ + AR +I P + +WV+A L +AK V
Sbjct: 394 QTNPKHPPGWIAAARLEEVAGKLQVARQLIQRGCEECPTNEDVWVEACRLASPDEAK-AV 452
Query: 686 FRKALEHIPNSVRL 727
+ ++ IPNSV+L
Sbjct: 453 IARGVKAIPNSVKL 466
Score = 39.5 bits (88), Expect = 0.003
Identities = 24/68 (35%), Positives = 32/68 (47%)
Frame = +2
Query: 509 KGCEVNPSSEELWLEAARLQPIDTARAVIAHAARNLPHSVRIWVKAADLEQEAKAKRRVF 688
KG E P S LW L + AR ++ A P V +W+ A LE +AK +V
Sbjct: 486 KGLEHIPDSVRLWKAVVELANEEDARLLLHRAVECCPLHVELWLALARLETYDQAK-KVL 544
Query: 689 RKALEHIP 712
KA E +P
Sbjct: 545 NKAREKLP 552
Score = 38.3 bits (85), Expect = 0.006
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Frame = +2
Query: 509 KGCEVNPSSEELWLEAARLQ----PIDTARAVIAHAARNLPHSVRIWVKAADLEQEAKAK 676
K NP +E LWL +A+ + + ARA++ A +LP+S IW+ A LE E
Sbjct: 690 KAVTYNPRAEVLWLMSAKEKWLAGDVPAARAILQEAYASLPNSEEIWLAAFKLEFENNEP 749
Query: 677 RR 682
R
Sbjct: 750 ER 751
Score = 37.5 bits (83), Expect = 0.011
Identities = 17/23 (73%), Positives = 19/23 (82%)
Frame = +3
Query: 444 WIASARLEEVTGKVQTARNLIIR 512
WIA+ARLEEV GK+Q AR LI R
Sbjct: 403 WIAAARLEEVAGKLQVARQLIQR 425
Score = 36.7 bits (81), Expect = 0.019
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Frame = +2
Query: 551 EAARLQPIDTARAVIAHAARNLPHSVRIWVKAADLEQEAKAKRRVF---RKALEHIPNS 718
E + I+TARA+ AHA IW+KAA LE+ K ++ RKA+ + P +
Sbjct: 640 ECKKRGSIETARAIYAHALSVFVSKKSIWLKAAQLEKSHGTKESLYNLLRKAVTYNPRA 698
Score = 32.3 bits (70), Expect = 0.41
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Frame = +2
Query: 524 NPSSEELWLEAARLQ----PIDTARAVIAHAARNLPHSVRIWVKAADL--EQEAKAKRRV 685
NP++ ELWL A R + A A++A A + P S +W A ++ + KAK
Sbjct: 864 NPATPELWLAAVRAELRHGNKKEADALLAKALQECPTSGILWAAAIEMVPRPQRKAKSSD 923
Query: 686 FRKALEHIPNSV 721
K +H P+ +
Sbjct: 924 AIKRCDHDPHVI 935
Score = 30.3 bits (65), Expect = 1.6
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Frame = +2
Query: 527 PSSEELWLEAARLQP----IDTARAVIAHAARNLPHSVRIWVKAADLEQEAKAKRR---V 685
PS LWL A L+ + +RAV+ A + P + +W+ A E K+ +
Sbjct: 831 PSCIPLWLSLANLEEKINGLSKSRAVLTMARKKNPATPELWLAAVRAELRHGNKKEADAL 890
Query: 686 FRKALEHIPNS 718
KAL+ P S
Sbjct: 891 LAKALQECPTS 901
Score = 29.9 bits (64), Expect = 2.2
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +3
Query: 444 WIASARLEEVTGKVQTARNLIIRDVKSIR 530
WI +A+LEE G Q+ +I R +K+++
Sbjct: 558 WITAAKLEEANGNTQSVIKVIERSIKTLQ 586
>05_04_0118 - 18162934-18162982,18163246-18163357,18163583-18163622
Length = 66
Score = 29.1 bits (62), Expect = 3.8
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 6/41 (14%)
Frame = -2
Query: 274 VSAQREYGRKHSRCCTSILRKFSGR------QHCVTVDCCC 170
+ ++++ G+K RCC S R+ + R + C+ CCC
Sbjct: 18 LDSEQQAGKKKGRCCGSSCRRSTKRGETSFIEGCIAALCCC 58
>03_06_0680 - 35497868-35497884,35498058-35501961
Length = 1306
Score = 29.1 bits (62), Expect = 3.8
Identities = 12/38 (31%), Positives = 25/38 (65%)
Frame = +3
Query: 429 IKEVSWIASARLEEVTGKVQTARNLIIRDVKSIRAVKS 542
IK++ + L+ ++GK+ R LIIR +S+++++S
Sbjct: 1197 IKKLEILKCENLQSLSGKLDAVRALIIRSCESLKSLES 1234
>04_03_0793 +
19699355-19699472,19700245-19700633,19700824-19701065,
19701150-19701663
Length = 420
Score = 28.7 bits (61), Expect = 5.0
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +2
Query: 524 NPSSEELWLEAARLQPIDTARAVIAHAARNLPHSVRIWVKAAD 652
NPS ++ L QP D ++ AR LPH ++++ +D
Sbjct: 362 NPSMKQAMLFPQPAQPRDAFHQILNGLARKLPHPEGVYLQPSD 404
>09_06_0231 + 21733151-21734905
Length = 584
Score = 28.3 bits (60), Expect = 6.6
Identities = 14/28 (50%), Positives = 14/28 (50%)
Frame = +2
Query: 134 CLASPHGVGATMAAAVNCDTMLPATKFP 217
CL P GVGA CD M PAT P
Sbjct: 47 CLRLPLGVGAGGCRVCACDEMDPATAAP 74
>02_04_0022 -
18992517-18993033,18993119-18993360,18993535-18993923,
18995447-18995603
Length = 434
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +2
Query: 524 NPSSEELWLEAARLQPIDTARAVIAHAARNLPHSVRIWVKAAD 652
NPS ++ L QP D ++ AR LPH +++K +
Sbjct: 375 NPSMKQAMLFPQPAQPRDAFHQILNGLARKLPHPDSVYLKPGE 417
>12_02_1180 + 26727171-26727239,26728782-26729642
Length = 309
Score = 27.9 bits (59), Expect = 8.7
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = +1
Query: 229 CSSGCASCRIP--AELKPSTGATNGVNRPPVP 318
C S ASC P AEL P T A+ G +P +P
Sbjct: 40 CLSTSASCTNPVSAELPPITMASQGAAKPKLP 71
>09_02_0338 + 7426999-7428322,7428390-7428646
Length = 526
Score = 27.9 bits (59), Expect = 8.7
Identities = 17/47 (36%), Positives = 20/47 (42%)
Frame = +2
Query: 290 LMESTDPQCHILQHRRPRLPLMQLEAPCSFNFCSLRAIRRYKSYYVD 430
LM C L HR P L + L A L+AI KSYY +
Sbjct: 397 LMVQHTRNCVTLPHRNPMLVVALLAATLGLVCLLLQAIYTMKSYYCE 443
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,015,277
Number of Sequences: 37544
Number of extensions: 349617
Number of successful extensions: 945
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 940
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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