Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00025
         (721 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    44   3e-05
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc...    31   0.22 
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch...    30   0.38 
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos...    27   2.0  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    26   4.7  
SPCC330.08 |alg11|gmd3|alpha-1,2-mannosyltransferase Alg11|Schiz...    26   6.2  

>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 43.6 bits (98), Expect = 3e-05
 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = +2

Query: 113 KPEELAEAGFFYTGQGDK---TKCFYCDGGLKDWESDDVPWEQHAR 241
           +P  +A +GF Y    D      C YCD  L DWE DD P+ +H R
Sbjct: 140 EPSVMAASGFVYNPTADAKDAAHCLYCDINLHDWEPDDDPYTEHKR 185



 Score = 37.1 bits (82), Expect = 0.003
 Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 8/60 (13%)
 Frame = +2

Query: 116 PEELAEAGFFYTGQG--------DKTKCFYCDGGLKDWESDDVPWEQHARWFDRSRTCNW 271
           PE LA  GF+Y            D   C+ C     DWE DD P ++H      S +C W
Sbjct: 41  PETLATVGFYYNPISESNSEERLDNVTCYMCTKSFYDWEDDDDPLKEH---ITHSPSCPW 97


>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 732

 Score = 30.7 bits (66), Expect = 0.22
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
 Frame = +1

Query: 355 DSTNNVAQ---EGEKHLDDSKICKICYSEERNVCFVPCGHVVACAKCAL 492
           D  +NVA      E+  +D +IC IC       C +PC H + C  CAL
Sbjct: 59  DPVSNVATVDASKEEQDEDEQICFICAEGITYSCVLPCNHRM-CHVCAL 106


>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 269

 Score = 29.9 bits (64), Expect = 0.38
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = +1

Query: 388 KHLDDSKICKICYSEERNVCFVPCGHVVACAKCALS 495
           + L D K C IC     N+   PCGH+  C  C LS
Sbjct: 199 QRLADYK-CVICLDSPENLSCTPCGHIF-CNFCILS 232


>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +1

Query: 403 SKICKICYSEERNVCFVPCGHVVACAKC 486
           S  C +C    RN C  PC   + C +C
Sbjct: 279 SLACTLCKKLARNACRTPCCDKLFCEEC 306


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -3

Query: 362  VESLVAACSSSLADIAVASDLTF*M*SRPFTNCTYASGRTIWRAV 228
            V S V+  SSS++D    + +T    S  FT+ T+++G T+   V
Sbjct: 3681 VPSTVSPHSSSISDTKSPATVTISSSSGQFTHSTFSTGSTMHNTV 3725


>SPCC330.08 |alg11|gmd3|alpha-1,2-mannosyltransferase
           Alg11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 471

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -3

Query: 278 PFTNCTYASGRTIWRAVPTERHRFPNLLAL 189
           P+ N      R +W AV + +  FPN++++
Sbjct: 62  PYCNAGGGGERVLWTAVKSVQTEFPNVISV 91


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,767,297
Number of Sequences: 5004
Number of extensions: 54439
Number of successful extensions: 177
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)