Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00025
(721 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g54150.1 68414.m06173 zinc finger (C3HC4-type RING finger) fa... 51 7e-07
At2g38185.4 68415.m04692 zinc finger (C3HC4-type RING finger) fa... 45 4e-05
At1g68820.1 68414.m07868 membrane protein, putative contains 7 t... 44 1e-04
At1g63900.1 68414.m07235 zinc finger (C3HC4-type RING finger) fa... 43 2e-04
At5g01450.1 68418.m00058 expressed protein 42 3e-04
At4g03000.2 68417.m00408 expressed protein contains similarity t... 42 4e-04
At4g03000.1 68417.m00407 expressed protein contains similarity t... 42 4e-04
At2g38185.3 68415.m04691 zinc finger (C3HC4-type RING finger) fa... 42 5e-04
At2g38185.2 68415.m04690 zinc finger (C3HC4-type RING finger) fa... 42 5e-04
At2g38185.1 68415.m04689 zinc finger (C3HC4-type RING finger) fa... 42 5e-04
At1g73950.1 68414.m08564 zinc finger (C3HC4-type RING finger) fa... 42 5e-04
At2g35330.1 68415.m04332 zinc finger (C3HC4-type RING finger) pr... 41 0.001
At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) fa... 40 0.001
At3g53410.1 68416.m05894 zinc finger (C3HC4-type RING finger) fa... 40 0.002
At1g59560.1 68414.m06698 expressed protein contains similarity t... 40 0.002
At1g18470.1 68414.m02304 zinc finger (C3HC4-type RING finger) fa... 39 0.003
At1g03370.1 68414.m00316 C2 domain-containing protein / GRAM dom... 39 0.004
At4g39050.1 68417.m05531 kinesin-related protein (MKRP2) kinesin... 38 0.007
At2g21380.1 68415.m02544 kinesin motor protein-related 38 0.007
At5g03200.1 68418.m00268 zinc finger (C3HC4-type RING finger) fa... 38 0.009
At3g09770.1 68416.m01157 zinc finger (C3HC4-type RING finger) fa... 37 0.015
At5g19080.1 68418.m02268 zinc finger (C3HC4-type RING finger) fa... 36 0.036
At1g32530.1 68414.m04014 zinc finger (C3HC4-type RING finger) fa... 36 0.036
At3g23280.2 68416.m02935 zinc finger (C3HC4-type RING finger) fa... 35 0.047
At3g23280.1 68416.m02934 zinc finger (C3HC4-type RING finger) fa... 35 0.047
At3g06140.1 68416.m00705 zinc finger (C3HC4-type RING finger) fa... 35 0.047
At1g10650.1 68414.m01207 expressed protein 35 0.062
At1g79110.2 68414.m09225 expressed protein 33 0.14
At1g79110.1 68414.m09224 expressed protein 33 0.14
At1g62370.1 68414.m07037 zinc finger (C3HC4-type RING finger) fa... 33 0.19
At3g12920.1 68416.m01610 expressed protein 33 0.25
At1g60610.2 68414.m06823 expressed protein 33 0.25
At1g60610.1 68414.m06822 expressed protein 33 0.25
At4g14365.1 68417.m02213 zinc finger (C3HC4-type RING finger) fa... 32 0.33
At5g47050.1 68418.m05798 expressed protein 32 0.44
At3g01650.1 68416.m00096 copine-related low similarity to SP|Q99... 32 0.44
At4g22250.1 68417.m03219 zinc finger (C3HC4-type RING finger) fa... 31 0.77
At3g09770.2 68416.m01158 zinc finger (C3HC4-type RING finger) fa... 31 0.77
At1g50410.1 68414.m05650 SNF2 domain-containing protein / helica... 31 1.0
At5g02510.1 68418.m00185 hypothetical protein 30 1.3
At2g28840.1 68415.m03506 ankyrin repeat family protein contains ... 30 1.8
At1g45976.1 68414.m05206 expressed protein 30 1.8
At5g44690.1 68418.m05476 hypothetical protein 29 2.3
At5g14420.4 68418.m01687 copine-related low similarity to SP|Q99... 29 2.3
At5g14420.3 68418.m01686 copine-related low similarity to SP|Q99... 29 2.3
At5g14420.2 68418.m01685 copine-related low similarity to SP|Q99... 29 2.3
At5g14420.1 68418.m01684 copine-related low similarity to SP|Q99... 29 2.3
At5g04460.1 68418.m00443 expressed protein 29 2.3
At1g32740.1 68414.m04037 expressed protein 29 2.3
At4g17680.1 68417.m02641 expressed protein 29 3.1
At3g07120.1 68416.m00848 zinc finger (C3HC4-type RING finger) fa... 29 3.1
At2g27870.1 68415.m03378 hypothetical protein 29 3.1
At4g11770.1 68417.m01876 kelch repeat-containing F-box family pr... 29 4.1
At5g18980.1 68418.m02255 expressed protein 28 5.4
At4g39600.1 68417.m05598 kelch repeat-containing F-box family pr... 28 5.4
At4g13100.2 68417.m02042 zinc finger (C3HC4-type RING finger) fa... 28 5.4
At4g13100.1 68417.m02041 zinc finger (C3HC4-type RING finger) fa... 28 5.4
At3g25030.1 68416.m03128 zinc finger (C3HC4-type RING finger) fa... 28 5.4
At2g34920.1 68415.m04287 ubiquitin-protein ligase-related contai... 28 5.4
At2g22010.1 68415.m02614 zinc finger (C3HC4-type RING finger) fa... 28 5.4
At2g03460.1 68415.m00304 kelch repeat-containing protein contain... 28 5.4
At5g45590.1 68418.m05601 expressed protein 28 7.2
At5g39550.1 68418.m04791 zinc finger (C3HC4-type RING finger) fa... 28 7.2
At5g05130.1 68418.m00544 SNF2 domain-containing protein / helica... 28 7.2
At1g30860.1 68414.m03774 expressed protein 27 9.5
>At1g54150.1 68414.m06173 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 383
Score = 51.2 bits (117), Expect = 7e-07
Identities = 20/51 (39%), Positives = 29/51 (56%)
Frame = +1
Query: 352 NDSTNNVAQEGEKHLDDSKICKICYSEERNVCFVPCGHVVACAKCALSTDK 504
NDS + E + D ++C IC S R F+PCGHVV C +CA + ++
Sbjct: 311 NDSVVDDEPEDADEIPDGELCVICVSRRRVPAFIPCGHVVCCRRCASTVER 361
>At2g38185.4 68415.m04692 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 872
Score = 45.2 bits (102), Expect = 4e-05
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = +1
Query: 400 DSKICKICYSEERNVCFVPCGHVVACAKCA--LSTDKCRCVAGRSRM 534
+ +C IC+ R+ CF+PCGH V+C +C + K RC R ++
Sbjct: 817 NKSLCAICFDAPRDCCFLPCGHCVSCYQCGTKIKRTKGRCPICRKKI 863
Score = 41.5 bits (93), Expect = 5e-04
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = +1
Query: 370 VAQEGEKHLDDSKICKICYSEERNVCFVPCGHVVACAKCALSTDKC--RCVAGRSRMR 537
+ +GE ++C IC+ R+ F+PCGH V+C +C + + C R +M+
Sbjct: 377 MGNDGEASNRSRRLCAICFDVPRDCFFLPCGHSVSCYECGTTMQEADGSCPICRRKMK 434
>At1g68820.1 68414.m07868 membrane protein, putative contains 7
transmembrane domains; similar to inhibitor of
apoptosis-2 IAP-2 (GI:20043383) [Mamestra configurata
nucleopolyhedrovirus]
Length = 468
Score = 44.0 bits (99), Expect = 1e-04
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = +1
Query: 355 DSTNNVAQEGEKHLDDSKICKICYSEERNVCFVPCGHVVACAKCALSTDKC 507
D T+ QE E+ ++ +C++C+ + NV +PC H V C+ C KC
Sbjct: 402 DITSYSQQEYERLQNEKILCRVCFEDPINVVLLPCRHHVLCSTCCEKCKKC 452
>At1g63900.1 68414.m07235 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 343
Score = 43.2 bits (97), Expect = 2e-04
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +1
Query: 349 TNDSTNNVAQEGEKHLDDSKICKICYSEERNVCFVPCGHVVACAKCALSTDKC 507
+N + +++ +K +C IC +E N FVPCGH+ C C+ C
Sbjct: 275 SNGTRESISDSTKKEDAVPDLCVICLEQEYNAVFVPCGHMCCCTACSSHLTSC 327
>At5g01450.1 68418.m00058 expressed protein
Length = 444
Score = 42.3 bits (95), Expect = 3e-04
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = +1
Query: 382 GEKHLDDSKICKICYSEERNVCFVPCGHVVACAKC 486
GE H +C ICY R+ F+ CGH VAC +C
Sbjct: 383 GEGHSSTRYLCAICYDAPRDCFFLSCGHCVACFQC 417
>At4g03000.2 68417.m00408 expressed protein contains similarity to
hypothetical proteins
Length = 814
Score = 41.9 bits (94), Expect = 4e-04
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +1
Query: 376 QEGEKHLDDSKICKICYSEERNVCFVPCGHVVACAKC 486
Q E + + C +C SEE +V F+PC H V C+KC
Sbjct: 748 QGAESKIKRERECVMCLSEEMSVIFLPCAHQVLCSKC 784
>At4g03000.1 68417.m00407 expressed protein contains similarity to
hypothetical proteins
Length = 814
Score = 41.9 bits (94), Expect = 4e-04
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +1
Query: 376 QEGEKHLDDSKICKICYSEERNVCFVPCGHVVACAKC 486
Q E + + C +C SEE +V F+PC H V C+KC
Sbjct: 748 QGAESKIKRERECVMCLSEEMSVIFLPCAHQVLCSKC 784
>At2g38185.3 68415.m04691 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 346
Score = 41.5 bits (93), Expect = 5e-04
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = +1
Query: 370 VAQEGEKHLDDSKICKICYSEERNVCFVPCGHVVACAKCALSTDKC--RCVAGRSRMR 537
+ +GE ++C IC+ R+ F+PCGH V+C +C + + C R +M+
Sbjct: 281 MGNDGEASNRSRRLCAICFDVPRDCFFLPCGHSVSCYECGTTMQEADGSCPICRRKMK 338
>At2g38185.2 68415.m04690 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 441
Score = 41.5 bits (93), Expect = 5e-04
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = +1
Query: 370 VAQEGEKHLDDSKICKICYSEERNVCFVPCGHVVACAKCALSTDKC--RCVAGRSRMR 537
+ +GE ++C IC+ R+ F+PCGH V+C +C + + C R +M+
Sbjct: 376 MGNDGEASNRSRRLCAICFDVPRDCFFLPCGHSVSCYECGTTMQEADGSCPICRRKMK 433
>At2g38185.1 68415.m04689 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 441
Score = 41.5 bits (93), Expect = 5e-04
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = +1
Query: 370 VAQEGEKHLDDSKICKICYSEERNVCFVPCGHVVACAKCALSTDKC--RCVAGRSRMR 537
+ +GE ++C IC+ R+ F+PCGH V+C +C + + C R +M+
Sbjct: 376 MGNDGEASNRSRRLCAICFDVPRDCFFLPCGHSVSCYECGTTMQEADGSCPICRRKMK 433
>At1g73950.1 68414.m08564 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 466
Score = 41.5 bits (93), Expect = 5e-04
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +1
Query: 376 QEGEKHLDDSKICKICYSEERNVCFVPCGHVVACAKCALSTDKC 507
QE E+ ++ +C++C+ E +V +PC H V C C+ KC
Sbjct: 407 QEYERLQNEKVLCRVCFEREISVVLLPCRHRVLCRNCSDKCKKC 450
>At2g35330.1 68415.m04332 zinc finger (C3HC4-type RING finger)
protein-related contains weak hit to Pfam profile:
PF00097 zinc finger, C3HC4 type (RING finger); weak
similarity to RING finger protein 8 (Swiss-Prot:O76064)
[Homo sapiens]
Length = 738
Score = 40.7 bits (91), Expect = 0.001
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Frame = +1
Query: 355 DSTNNVAQEGEKHLDDSKICKICYSEERNVCFVPCGHVVACAKCA---LSTDKCRCVAGR 525
+ N + EK + + C IC +E +V F+PC H V CA C+ + + K C R
Sbjct: 665 EELNRLDGSYEKEANYDRECLICMKDEVSVVFLPCAHQVVCASCSDSFMGSGKATCPCCR 724
Query: 526 S 528
+
Sbjct: 725 A 725
>At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) family
protein contains Pfam profile: PF00097 zinc finger, C3HC4
type (RING finger)
Length = 4706
Score = 40.3 bits (90), Expect = 0.001
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = +1
Query: 409 ICKICYSEERNVCFVPCGHVVACAKCALSTDKC 507
+C+IC ++E V VPCGHV+ C C+ S +C
Sbjct: 4659 LCQICQTKEVEVTIVPCGHVL-CRHCSTSVSRC 4690
>At3g53410.1 68416.m05894 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain: PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 299
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = +1
Query: 364 NNVAQEGEKHLDDSKICKICYSEERNVCFVPCGHVVACAKCA 489
N V GE + K C IC SE R+ +PC H+ C+ CA
Sbjct: 227 NTVDDNGEDANERGKECVICLSEPRDTTVLPCRHMCMCSGCA 268
>At1g59560.1 68414.m06698 expressed protein contains similarity to
apoptosis inhibitors
Length = 338
Score = 39.9 bits (89), Expect = 0.002
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +1
Query: 397 DDSKICKICYSEERNVCFVPCGHVVACAKCALSTDKC 507
D +C +C ++ N FV CGH+ C C+L C
Sbjct: 286 DTPDLCVVCLDQKYNTAFVECGHMCCCTPCSLQLRTC 322
>At1g18470.1 68414.m02304 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 467
Score = 39.1 bits (87), Expect = 0.003
Identities = 15/44 (34%), Positives = 27/44 (61%)
Frame = +1
Query: 376 QEGEKHLDDSKICKICYSEERNVCFVPCGHVVACAKCALSTDKC 507
QE E+ ++ +C++C+ ++ ++ +PC H V C CA DKC
Sbjct: 408 QEYERLQNEKVLCRVCFEKDISLVLLPCRHRVLCRTCA---DKC 448
>At1g03370.1 68414.m00316 C2 domain-containing protein / GRAM
domain-containing protein contains Pfam profiles
PF00168: C2 domain; contains PF02893: GRAM domain;
similar to Chain A, Crystal Structure Of Synaptotagmin
Iii C2aC2B Length(GI:6980525); similar to Synaptotagmin
III (SytIII) (Swiss-Prot:P40748) [Rattus norvegicus]
Length = 1859
Score = 38.7 bits (86), Expect = 0.004
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = +1
Query: 412 CKICYSEERNVCFVPCGHVVACAKC 486
C +C SEE +V F+PC H V C KC
Sbjct: 768 CVMCLSEEMSVIFLPCAHQVLCFKC 792
>At4g39050.1 68417.m05531 kinesin-related protein (MKRP2) kinesin
motor protein - Ustilago maydis, PID:g2062750; identical
to cDNA MKRP2 mRNA for kinesin-related protein
GI:16902293, kinesin-related protein [Arabidopsis
thaliana] GI:16902294
Length = 1055
Score = 37.9 bits (84), Expect = 0.007
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +1
Query: 400 DSKICKICYSEERNVCFVPCGHVVACAKCALSTDKC 507
+S ICK+C+ +PC H C C+L+ +C
Sbjct: 1004 NSHICKVCFESPTAAILLPCRHFCLCKSCSLACSEC 1039
>At2g21380.1 68415.m02544 kinesin motor protein-related
Length = 1058
Score = 37.9 bits (84), Expect = 0.007
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +1
Query: 400 DSKICKICYSEERNVCFVPCGHVVACAKCALSTDKC 507
+S ICK+C+ +PC H C C+L+ +C
Sbjct: 1007 NSHICKVCFESPTATILLPCRHFCLCKSCSLACSEC 1042
>At5g03200.1 68418.m00268 zinc finger (C3HC4-type RING finger)
family protein contains weak similarity to zinc finger
proteins
Length = 337
Score = 37.5 bits (83), Expect = 0.009
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +1
Query: 397 DDSKICKICYSEERNVCFVPCGHVVACAKCA 489
D+ K C +C SE R+ +PC H+ C+ CA
Sbjct: 280 DEGKECVVCLSEPRDTTVLPCRHMCMCSGCA 310
>At3g09770.1 68416.m01157 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 388
Score = 36.7 bits (81), Expect = 0.015
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +1
Query: 397 DDSKICKICYSEERNVCFVPCGHVVACAKCA 489
D K C IC SE R+ +PC H+ C+ CA
Sbjct: 314 DPGKECVICLSEPRDTTVLPCRHMCMCSGCA 344
>At5g19080.1 68418.m02268 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 378
Score = 35.5 bits (78), Expect = 0.036
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Frame = +1
Query: 352 NDSTNNVAQEGEKHLDDS--KICKICYSEERNVCFVPCGHVVACAKCA----LSTDKC 507
N T A G L+D+ K C IC +E ++ +PC H+ C+ CA T+KC
Sbjct: 302 NSITQGTAASG---LEDTGGKECVICLTEPKDTAVMPCRHLCLCSDCAEELRFQTNKC 356
>At1g32530.1 68414.m04014 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger); weak similarity to
interaptin (GI:3549261) [Dictyostelium discoideum] weak
similarity to Axoneme-associated protein mst101(2)
(Swiss-Prot:Q08696) [Drosophila hydei]
Length = 711
Score = 35.5 bits (78), Expect = 0.036
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 412 CKICYSEERNVCFVPCGHVVACAKCA 489
C IC +E +V F+PC H V C C+
Sbjct: 653 CIICMKDEVSVVFLPCAHQVVCGSCS 678
>At3g23280.2 68416.m02935 zinc finger (C3HC4-type RING finger)
family protein / ankyrin repeat family protein contains
Pfam profile: PF00097 zinc finger, C3HC4 type (RING
finger) and Pfam profile: PF00023 ankyrin repeat
Length = 438
Score = 35.1 bits (77), Expect = 0.047
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +1
Query: 379 EGEKHLD-DSKICKICYSEERNVCFVPCGHVVACAKC 486
EGE+ D ++ C IC VPCGHV C C
Sbjct: 375 EGERKEDGNTGTCAICLDAPSEAVCVPCGHVAGCMSC 411
>At3g23280.1 68416.m02934 zinc finger (C3HC4-type RING finger)
family protein / ankyrin repeat family protein contains
Pfam profile: PF00097 zinc finger, C3HC4 type (RING
finger) and Pfam profile: PF00023 ankyrin repeat
Length = 462
Score = 35.1 bits (77), Expect = 0.047
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +1
Query: 379 EGEKHLD-DSKICKICYSEERNVCFVPCGHVVACAKC 486
EGE+ D ++ C IC VPCGHV C C
Sbjct: 399 EGERKEDGNTGTCAICLDAPSEAVCVPCGHVAGCMSC 435
>At3g06140.1 68416.m00705 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 Zinc
finger, C3HC4 type (RING finger)
Length = 359
Score = 35.1 bits (77), Expect = 0.047
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Frame = +1
Query: 358 STNNVAQEGEKHLDDSKICKICYSEERNVCFVPCGHVVACAKCA----LSTDKC 507
ST A G C IC +E ++ +PC H+ C+ CA L ++KC
Sbjct: 284 STTQGAASGLDESGSGTECVICMTEAKDTAVLPCRHLCMCSDCAKELRLQSNKC 337
>At1g10650.1 68414.m01207 expressed protein
Length = 339
Score = 34.7 bits (76), Expect = 0.062
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 412 CKICYSEERNVCFVPCGHVVACAKCALSTDKC 507
CK+C +E +V VPC H+ C +C + T C
Sbjct: 292 CKMCNVKEVSVLIVPCRHLSLCKECDVFTKIC 323
>At1g79110.2 68414.m09225 expressed protein
Length = 355
Score = 33.5 bits (73), Expect = 0.14
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +1
Query: 406 KICKICYSEERNVCFVPCGHVVACAKCALSTDKC 507
++C+ C EE V +PC H+ C C S C
Sbjct: 305 RMCRNCGEEESCVLLLPCRHLCLCGVCGSSVHTC 338
>At1g79110.1 68414.m09224 expressed protein
Length = 358
Score = 33.5 bits (73), Expect = 0.14
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +1
Query: 406 KICKICYSEERNVCFVPCGHVVACAKCALSTDKC 507
++C+ C EE V +PC H+ C C S C
Sbjct: 308 RMCRNCGEEESCVLLLPCRHLCLCGVCGSSVHTC 341
>At1g62370.1 68414.m07037 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 204
Score = 33.1 bits (72), Expect = 0.19
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 394 LDDSKICKICYSEERNVCFVPCGHVVACAKCA 489
L + +C +C E+ F+PCGH C C+
Sbjct: 150 LGNDPLCCVCMGREKGAAFIPCGHTY-CRVCS 180
>At3g12920.1 68416.m01610 expressed protein
Length = 335
Score = 32.7 bits (71), Expect = 0.25
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 409 ICKICYSEERNVCFVPCGHVVACAKCALSTDKC 507
+C+ C E +V +PC H+ C+ C S + C
Sbjct: 286 MCRSCGKGEASVLLLPCRHMCLCSVCGSSLNTC 318
>At1g60610.2 68414.m06823 expressed protein
Length = 340
Score = 32.7 bits (71), Expect = 0.25
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 412 CKICYSEERNVCFVPCGHVVACAKCALSTDKC 507
CK+C + +V VPC H+ C C + T C
Sbjct: 293 CKLCNVKNVSVLLVPCRHLSLCKDCDVFTGVC 324
>At1g60610.1 68414.m06822 expressed protein
Length = 340
Score = 32.7 bits (71), Expect = 0.25
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 412 CKICYSEERNVCFVPCGHVVACAKCALSTDKC 507
CK+C + +V VPC H+ C C + T C
Sbjct: 293 CKLCNVKNVSVLLVPCRHLSLCKDCDVFTGVC 324
>At4g14365.1 68417.m02213 zinc finger (C3HC4-type RING finger)
family protein / ankyrin repeat family protein contains
Pfam profile: PF00097 zinc finger, C3HC4 type (RING
finger) and Pfam profile: PF00023 ankyrin repeat
Length = 376
Score = 32.3 bits (70), Expect = 0.33
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = +1
Query: 409 ICKICYSEERNVCFVPCGHVVACAKC 486
+C IC VPCGHV C C
Sbjct: 324 LCVICVDAPSEAVCVPCGHVAGCISC 349
>At5g47050.1 68418.m05798 expressed protein
Length = 300
Score = 31.9 bits (69), Expect = 0.44
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 412 CKICYSEERNVCFVPCGHVVACAKCALSTDKC 507
C+IC V +PC H+V C +C S C
Sbjct: 253 CRICRRRSATVLALPCRHLVMCTECDGSVRIC 284
>At3g01650.1 68416.m00096 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 489
Score = 31.9 bits (69), Expect = 0.44
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +1
Query: 397 DDSKICKICYSEERNVCFVPCGHVVACAKCALSTDKC 507
DD ++C IC S +N+ F CGH C +C C
Sbjct: 441 DDIQLCPICLSNPKNMAF-GCGH-QTCCECGPDLKVC 475
>At4g22250.1 68417.m03219 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 214
Score = 31.1 bits (67), Expect = 0.77
Identities = 9/30 (30%), Positives = 16/30 (53%)
Frame = +1
Query: 400 DSKICKICYSEERNVCFVPCGHVVACAKCA 489
+ +C +C ++ F+PCGH C C+
Sbjct: 162 NDSVCCVCMGRKKGAAFIPCGHTF-CRVCS 190
>At3g09770.2 68416.m01158 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 341
Score = 31.1 bits (67), Expect = 0.77
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 397 DDSKICKICYSEERNVCFVPCGHVVA 474
D K C IC SE R+ +PC H+V+
Sbjct: 314 DPGKECVICLSEPRDTTVLPCRHMVS 339
>At1g50410.1 68414.m05650 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to transcription
factor RUSH-1alpha [Oryctolagus cuniculus] GI:1655930;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 981
Score = 30.7 bits (66), Expect = 1.0
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Frame = +1
Query: 394 LDDSKICKICYSEERNVCFVPCGHVVA--CAKCALSTDKCRCVAGRSRMRCG-STSRERT 564
L+ S IC +C+ + CGH+ C ++ D+ C A R R + ++
Sbjct: 673 LESSPICCVCHDPPEDPVVTLCGHIFCYQCVSDYITGDEDTCPAPRCREQLAHDVVFSKS 732
Query: 565 LLASCI 582
L SC+
Sbjct: 733 TLRSCV 738
>At5g02510.1 68418.m00185 hypothetical protein
Length = 179
Score = 30.3 bits (65), Expect = 1.3
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = +2
Query: 134 AGFFYTGQGDKTKCFYCDGGLKDWESDDVPWEQHARWFDR 253
+ + G D+T+ + DG ++ W +D+ A+W DR
Sbjct: 16 SSILFNGDSDRTEAGFFDGSVESWNDEDM--IDGAKWVDR 53
>At2g28840.1 68415.m03506 ankyrin repeat family protein contains
ankyrin repeats, Pfam:PF00023
Length = 456
Score = 29.9 bits (64), Expect = 1.8
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +1
Query: 394 LDDSKICKICYSEERNVCFVPCGHVVACAKCALS 495
+ D+++C IC+ + + CGH + CA+C L+
Sbjct: 313 VSDTELCCICFEQVCTIEVKDCGHQM-CAQCTLA 345
>At1g45976.1 68414.m05206 expressed protein
Length = 325
Score = 29.9 bits (64), Expect = 1.8
Identities = 9/33 (27%), Positives = 15/33 (45%)
Frame = +1
Query: 409 ICKICYSEERNVCFVPCGHVVACAKCALSTDKC 507
+C+ C E + +PC H+ C +C C
Sbjct: 278 MCRFCGVREMCMLLLPCNHMCLCKECERKLSSC 310
>At5g44690.1 68418.m05476 hypothetical protein
Length = 684
Score = 29.5 bits (63), Expect = 2.3
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +1
Query: 412 CKICYSEERNVCFVPCGHVVACAKCA 489
C IC+ + CGH+ C KCA
Sbjct: 632 CSICFEMPIDSLLYRCGHMCTCLKCA 657
>At5g14420.4 68418.m01687 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 468
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +1
Query: 400 DSKICKICYSEERNVCFVPCGHVVACAKCALSTDKC 507
D+++C IC S +++ F CGH C +C C
Sbjct: 421 DNQLCPICLSNPKDMAF-GCGH-QTCCECGPDLQMC 454
>At5g14420.3 68418.m01686 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 468
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +1
Query: 400 DSKICKICYSEERNVCFVPCGHVVACAKCALSTDKC 507
D+++C IC S +++ F CGH C +C C
Sbjct: 421 DNQLCPICLSNPKDMAF-GCGH-QTCCECGPDLQMC 454
>At5g14420.2 68418.m01685 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 468
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +1
Query: 400 DSKICKICYSEERNVCFVPCGHVVACAKCALSTDKC 507
D+++C IC S +++ F CGH C +C C
Sbjct: 421 DNQLCPICLSNPKDMAF-GCGH-QTCCECGPDLQMC 454
>At5g14420.1 68418.m01684 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 468
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +1
Query: 400 DSKICKICYSEERNVCFVPCGHVVACAKCALSTDKC 507
D+++C IC S +++ F CGH C +C C
Sbjct: 421 DNQLCPICLSNPKDMAF-GCGH-QTCCECGPDLQMC 454
>At5g04460.1 68418.m00443 expressed protein
Length = 863
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +1
Query: 373 AQEGEKHLDDSK-ICKICYSEERNVCFVPCGHVVACAKCA 489
+++G + SK C +C + CGH+ C+KCA
Sbjct: 797 SEDGSRWSHVSKGTCCVCCDNHIDALLYRCGHMCTCSKCA 836
>At1g32740.1 68414.m04037 expressed protein
Length = 312
Score = 29.5 bits (63), Expect = 2.3
Identities = 11/32 (34%), Positives = 14/32 (43%)
Frame = +1
Query: 412 CKICYSEERNVCFVPCGHVVACAKCALSTDKC 507
CK C E V +PC H+ C C + C
Sbjct: 265 CKACREREATVVVLPCRHLSICPGCDRTALAC 296
>At4g17680.1 68417.m02641 expressed protein
Length = 314
Score = 29.1 bits (62), Expect = 3.1
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = +1
Query: 412 CKICYSEERNVCFVPCGHVVACAKC 486
C+IC + V +PC H++ C C
Sbjct: 267 CRICRRKSATVMALPCQHLILCNGC 291
>At3g07120.1 68416.m00848 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 Zinc
finger, C3HC4 type (RING finger)
Length = 360
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
Frame = +1
Query: 352 NDSTNNVAQEGEKHL--DDSKICKICYSEERNVCFVPCGHVVACAKCA--LSTDKCRC 513
++ N +EG+ H + C +C + + F PCGH C C+ L K C
Sbjct: 290 DEEDENNEEEGDSHGGGEGELSCCVCMVKIKGASFTPCGHTF-CKLCSKELMAQKGHC 346
>At2g27870.1 68415.m03378 hypothetical protein
Length = 314
Score = 29.1 bits (62), Expect = 3.1
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 373 AQEGEKHLDDSKICKICYSEERNVCFV 453
A+ +HL DS IC+IC E+ + +
Sbjct: 9 AERRRRHLSDSDICQICKGAEKTIIHI 35
>At4g11770.1 68417.m01876 kelch repeat-containing F-box family
protein contains F-box domain Pfam:PF00646 and Kelch
motif Pfam:PF01344
Length = 396
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +2
Query: 392 IWMTLKYVKYVIPRSVTCASCRAATWWRAPSARCRRTS 505
I+M Y+ V+ V CR+ TW APS + R S
Sbjct: 152 IYMIGGYINGVLSSRVFFLDCRSHTWHEAPSMQVARKS 189
>At5g18980.1 68418.m02255 expressed protein
Length = 835
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 173 CFYCDGGLKDWESDDVPWEQHARWFDRSRT 262
C + L+ W++ DVP +ARWF S T
Sbjct: 189 CVVPETTLETWKNSDVPLLPYARWFFISST 218
>At4g39600.1 68417.m05598 kelch repeat-containing F-box family
protein similar to SKP1 interacting partner 6
[Arabidopsis thaliana] GI:10716957; contains Pfam
profiles PF01344: Kelch motif, PF00646: F-box domain
Length = 367
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +2
Query: 434 SVTCASCRAATWWRAPSARCRRTSADVSQDVHECGAA 544
+V+ CR+ TW APS R T++ + ++ G++
Sbjct: 142 NVSFLDCRSHTWLEAPSMRVAHTNSQLDGKMYLAGSS 178
>At4g13100.2 68417.m02042 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 265
Score = 28.3 bits (60), Expect = 5.4
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = +1
Query: 412 CKICYSEERNVCFVPCGHVVACAKCA 489
C +C + F+PCGH C C+
Sbjct: 217 CCVCMVRSKGAAFIPCGHTF-CRLCS 241
>At4g13100.1 68417.m02041 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 304
Score = 28.3 bits (60), Expect = 5.4
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = +1
Query: 412 CKICYSEERNVCFVPCGHVVACAKCA 489
C +C + F+PCGH C C+
Sbjct: 256 CCVCMVRSKGAAFIPCGHTF-CRLCS 280
>At3g25030.1 68416.m03128 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 250
Score = 28.3 bits (60), Expect = 5.4
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = +1
Query: 412 CKICYSEERNVCFVPCGHVVACAKCA 489
C +C + F+PCGH C C+
Sbjct: 202 CCVCMVRSKGAAFIPCGHTF-CRLCS 226
>At2g34920.1 68415.m04287 ubiquitin-protein ligase-related contains
weak similarity to Ubiquitin-protein ligase E3 Mdm2 (EC
6.3.2.-) (p53-binding protein Mdm2) (Oncoprotein Mdm2)
(Double minute 2 protein) (Swiss-Prot:P23804) [Mus
musculus]
Length = 785
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = +1
Query: 367 NVAQEGEKHLDD--SKICKICYSEERNVCFVPCGHVVACAKCA 489
N + + HL++ + C +C + CGH+ C +CA
Sbjct: 714 NASLQKSVHLENPFKRKCCVCNETQVETLLYRCGHMCTCLRCA 756
>At2g22010.1 68415.m02614 zinc finger (C3HC4-type RING finger) family
protein contains Pfam profile: PF00097 zinc finger, C3HC4
type (RING finger)
Length = 1280
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +1
Query: 400 DSKICKICYSEERNVCFVPCGHVVACAKC 486
+ C ICY+ E N PC H +C C
Sbjct: 1213 EDNTCCICYAGEANAMIAPCSH-RSCYGC 1240
>At2g03460.1 68415.m00304 kelch repeat-containing protein contains
Pfam profile PF01344: Kelch motif
Length = 333
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Frame = +2
Query: 434 SVTCASCRAATWWRAPSAR---CRRTSADVSQDVHECGAAL 547
SV+ CR+ TW APS R C +S+ + + ++ G+ L
Sbjct: 94 SVSILDCRSHTWREAPSLREGLCSVSSSVLDRKIYVAGSCL 134
>At5g45590.1 68418.m05601 expressed protein
Length = 173
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = -3
Query: 584 SIQLARRVLSREVEPHR-IRERPATHRHLSVDSAHLAHATTW 462
S+Q R + PHR I P+ RHL+ + A++T W
Sbjct: 12 SLQSNRNLSFYGASPHRLIHHSPSPSRHLTTTTLGFANSTKW 53
>At5g39550.1 68418.m04791 zinc finger (C3HC4-type RING finger)
family protein contains zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 617
Score = 27.9 bits (59), Expect = 7.2
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Frame = +1
Query: 364 NNVAQEGEKHLDDSKICKICYSEERNVCFVPCGHVVACAKC----ALSTDKCRCVAGRSR 531
+ V +E +K L+ C IC PCGH C KC A+ K C+ RS+
Sbjct: 115 DGVDEEEKKKLEI--FCSICIQLPERPITTPCGHNF-CLKCFEKWAVGQGKLTCMICRSK 171
Query: 532 M 534
+
Sbjct: 172 I 172
>At5g05130.1 68418.m00544 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to transcription
factor RUSH-1alpha [Oryctolagus cuniculus] GI:1655930;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 862
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/29 (37%), Positives = 13/29 (44%)
Frame = +1
Query: 412 CKICYSEERNVCFVPCGHVVACAKCALST 498
C IC S N+ C H+ C C L T
Sbjct: 616 CPICISPPTNIIITRCAHIF-CRACILQT 643
>At1g30860.1 68414.m03774 expressed protein
Length = 730
Score = 27.5 bits (58), Expect = 9.5
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = +1
Query: 367 NVAQEGEKHLDDSKICKICYSEERNVCFV--PCGHVVACAKCA 489
N + + + H ++ K C +E V V CGH+ C KCA
Sbjct: 659 NASLQHKAHQENPMKRKCCVCDETQVEAVLYRCGHMCMCLKCA 701
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,161,735
Number of Sequences: 28952
Number of extensions: 310721
Number of successful extensions: 884
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 883
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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