Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00023
(608 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase |Schi... 57 2e-09
SPAC186.07c |||hydroxyacid dehydrogenase |Schizosaccharomyces po... 42 9e-05
SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase |Schizosac... 42 9e-05
SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces po... 37 0.002
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 31 0.100
SPAC19B12.10 |sst2||human AMSH protein homolog|Schizosaccharomyc... 28 0.93
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 28 1.2
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 2.1
SPAC1399.05c |||transcription factor, zf-fungal binuclear cluste... 27 2.1
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 27 2.8
SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb... 27 2.8
SPBC30D10.06 |lsm4||U6 snRNP-associated protein Lsm4|Schizosacch... 27 2.8
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 26 5.0
SPCC1259.06 |||transcription factor TFIID complex subunit 8 |Sch... 25 6.5
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 25 6.5
SPAC1635.01 |||voltage-dependent anion-selective channel|Schizos... 25 6.5
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce... 25 8.7
SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase Byr2... 25 8.7
SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma... 25 8.7
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha... 25 8.7
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 25 8.7
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos... 25 8.7
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc... 25 8.7
>SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 466
Score = 56.8 bits (131), Expect = 2e-09
Identities = 30/95 (31%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Frame = +2
Query: 287 DNIDVDSAGKKGVGVINAPGANALSACELTCTLMLVLARHVVPASTALKAGRWDRALYTG 466
+ +D+D A ++G+ V N+P AN+ S EL ++ LAR V S L G W++
Sbjct: 131 NQVDLDFAAERGIAVFNSPYANSRSVAELVIGYIISLARQVGDRSLELHRGEWNKVSSGC 190
Query: 467 SELAGKTLAILGLTG-RPRVATRMYAFGMNIIGFD 568
E+ GKTL I+G +++ A G++++ +D
Sbjct: 191 WEIRGKTLGIIGYGHIGSQLSVLAEAMGLHVVYYD 225
>SPAC186.07c |||hydroxyacid dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 332
Score = 41.5 bits (93), Expect = 9e-05
Identities = 23/76 (30%), Positives = 40/76 (52%)
Frame = +2
Query: 287 DNIDVDSAGKKGVGVINAPGANALSACELTCTLMLVLARHVVPASTALKAGRWDRALYTG 466
+N+D+ +A G+ V+ P + + E T L+L L R + A ++ ++ G
Sbjct: 80 NNVDLKAAADNGITVVRVPAYSPYAVAEYTIGLLLSLNRKIHRAYVRVREDDFNLNGLLG 139
Query: 467 SELAGKTLAILGLTGR 514
+L GKT+ +LG TGR
Sbjct: 140 HDLHGKTIGLLG-TGR 154
>SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 340
Score = 41.5 bits (93), Expect = 9e-05
Identities = 21/73 (28%), Positives = 34/73 (46%)
Frame = +2
Query: 287 DNIDVDSAGKKGVGVINAPGANALSACELTCTLMLVLARHVVPASTALKAGRWDRALYTG 466
+N+DVD A + GV V N P + L + R A +L+ G+W + L
Sbjct: 95 NNVDVDWATRNGVYVANTPNGPTEGTANMNLMLFMCTLRGAREAEQSLRLGKWRQNLSLT 154
Query: 467 SELAGKTLAILGL 505
+ GK + I+G+
Sbjct: 155 DDPYGKRVGIIGM 167
>SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 334
Score = 37.1 bits (82), Expect = 0.002
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
Frame = +2
Query: 287 DNIDVDSAGKKGVGVINAPGANALSACELTCTLMLVLARHVVPASTALKAGRWDRALYTG 466
+ +DV + +G+ V + P A + ++ LML R L W+
Sbjct: 92 ETVDVAACTARGIQVSHVPKAVDDATADVGIFLMLGALRGFNQGIFELHKNNWNANCKPS 151
Query: 467 SELAGKTLAILGLTGRPR-VATRMYAFGMNII 559
+ GKTL ILGL G + +A R AF M I+
Sbjct: 152 HDPEGKTLGILGLGGIGKTMAKRARAFDMKIV 183
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 31.5 bits (68), Expect = 0.100
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = -3
Query: 477 ASSLPVYRARSHLPAFSAVEAGTTWRARTNINVQVSS-HALSALAPGALITPTPFLPAES 301
+SSLP + S P+ S++ T+ + +V SS H + P L P+ F+ A+
Sbjct: 116 SSSLPSIPSSSSTPSISSIPHTTSSVSNDIPSVLGSSDHPIDLDNPEHLTPPSSFITAKQ 175
Query: 300 TSMLSTPAP 274
S L TP P
Sbjct: 176 LSRLPTPLP 184
>SPAC19B12.10 |sst2||human AMSH protein homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 435
Score = 28.3 bits (60), Expect = 0.93
Identities = 20/96 (20%), Positives = 39/96 (40%)
Frame = -3
Query: 501 PRMARVLPASSLPVYRARSHLPAFSAVEAGTTWRARTNINVQVSSHALSALAPGALITPT 322
P +L S + ++ S LP F ++ +N+ + S ++L+ L++P
Sbjct: 159 PSSTDLLSPDSQKLSKSSSDLPQFDYPSLNSSPTFNSNLPISSSRFEKTSLSDSKLVSPE 218
Query: 321 PFLPAESTSMLSTPAPARPTTFTSRLRPTPLWSLEL 214
P + + P R TS RP P + ++
Sbjct: 219 PLDDNKDIQFIKKPIYTR----TSEPRPKPAGTFKI 250
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 27.9 bits (59), Expect = 1.2
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Frame = -3
Query: 411 TTWRARTNINVQVSSHALSALAPGALITPTPFLPAEST---SMLSTPAPARPTTFTSRLR 241
TT + + + S+L P + + TP A ST S STP + +T T+
Sbjct: 261 TTAATSASATSSSAQYNTSSLLPSSTPSSTPLSSANSTTATSASSTPLTSVNSTTTTSAS 320
Query: 240 PTPLWSLELLNA 205
TPL S+ N+
Sbjct: 321 STPLSSVSSANS 332
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.1 bits (57), Expect = 2.1
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = -3
Query: 342 GALITP-TPFLPAESTSMLSTPAPARPTTFT 253
G TP TP +P STS STP P T+ T
Sbjct: 295 GNSTTPVTPTVPPTSTSSTSTPPPPASTSST 325
Score = 27.1 bits (57), Expect = 2.1
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = -3
Query: 342 GALITP-TPFLPAESTSMLSTPAPARPTTFT 253
G TP TP +P STS STP P T+ T
Sbjct: 349 GNSTTPVTPTVPPTSTSSTSTPPPPASTSST 379
Score = 26.2 bits (55), Expect = 3.7
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -3
Query: 339 ALITP-TPFLPAESTSMLSTPAPARPTTFT-SRLRPTPLWS 223
+L TP TP +P STS S P P T+ T + P P S
Sbjct: 129 SLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSNPLPTTS 169
Score = 25.8 bits (54), Expect = 5.0
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -3
Query: 339 ALITP-TPFLPAESTSMLSTPAPARPTTFT-SRLRPTPLWS 223
+L TP TP +P STS S P P T+ T + P P S
Sbjct: 186 SLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTS 226
Score = 25.8 bits (54), Expect = 5.0
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -3
Query: 339 ALITP-TPFLPAESTSMLSTPAPARPTTFT-SRLRPTPLWS 223
+L TP TP +P STS S P P T+ T + P P S
Sbjct: 242 SLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTS 282
>SPAC1399.05c |||transcription factor, zf-fungal binuclear cluster
type|Schizosaccharomyces pombe|chr 1|||Manual
Length = 529
Score = 27.1 bits (57), Expect = 2.1
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +2
Query: 419 STALKAGRWDRALYTGSELAGKTLAILGLTGRPRVATRMYAFGMNII 559
S A ++ LYT S L T ++ L P + R+Y +NI+
Sbjct: 145 SVDYSASQYMELLYTKSHLMLATACLIALRHNPSLKARIYTDVLNIV 191
>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 867
Score = 26.6 bits (56), Expect = 2.8
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = -3
Query: 462 VYRARSHLPAFSAVEAGTTWRARTNINVQVSSHALSALAPGA 337
+ R R HL + A E T WR + + + LS L P A
Sbjct: 334 IRRLRGHLREYVAWERNTIWREMMAMERRTQAARLSGLKPVA 375
>SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 695
Score = 26.6 bits (56), Expect = 2.8
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = +2
Query: 392 VLARHVVPASTALKAGRWDRALYTGSELAGKTLAILGLTGRPRVATRMYAF 544
+L + A T+ K + + GS GK++ ++ L G V T++Y F
Sbjct: 579 ILIADSIDAFTSSKTAYVNATWFHGSLEKGKSMHVIALFGCHAVLTKLYCF 629
>SPBC30D10.06 |lsm4||U6 snRNP-associated protein
Lsm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 121
Score = 26.6 bits (56), Expect = 2.8
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +2
Query: 116 QRLRNRHHYQGQDLQGRTSYGDTQPRRSG 202
QR ++G+ +GR +YG T P R G
Sbjct: 86 QRENRGSRFRGRGQRGRGNYGHTAPNRRG 114
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 25.8 bits (54), Expect = 5.0
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = -3
Query: 372 SSHALSALAPGALITPTPFLPAESTSMLSTPAPARPTTFTSRLRPTP 232
++ A +A P A P P +P + + ++TP A P + P P
Sbjct: 352 TTEAAAAQYPQAAFPPPPVMPQPAAAAVTTPV-AAPVAAAAAAVPVP 397
>SPCC1259.06 |||transcription factor TFIID complex subunit 8
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 222
Score = 25.4 bits (53), Expect = 6.5
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -3
Query: 375 VSSHALSALAPGALITPTPFLPAESTSMLSTPAPARPTT 259
+ S A+S P ++ P PA T M + P RPT+
Sbjct: 117 LGSLAVSQNRPAYVVNHLPPFPASHTYMATPVYPVRPTS 155
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 25.4 bits (53), Expect = 6.5
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -3
Query: 411 TTWRARTNINVQVSSHALSALAPGALITPTPFLPAESTSMLSTP 280
T +R ++N+ S +A S A ++ +PA STS S P
Sbjct: 524 TPYRGLHDVNLPASGNASSVSAIPPQVSAQTTIPAASTSATSGP 567
>SPAC1635.01 |||voltage-dependent anion-selective
channel|Schizosaccharomyces pombe|chr 1|||Manual
Length = 282
Score = 25.4 bits (53), Expect = 6.5
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = -3
Query: 525 ATRGRPVKPRMARVLPASSLPVYRARSHLPAFSAVEAG--TTWRARTNIN 382
AT G P + +++L V+RA + S VEAG TW A + N
Sbjct: 165 ATIGYLASPLSVALQASNNLSVFRASYYHRVSSDVEAGGNVTWDAASTAN 214
>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 413
Score = 25.0 bits (52), Expect = 8.7
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -3
Query: 375 VSSHALSALAPGALITPTPFLPAESTSMLSTPAPARPTTFT 253
+SS+AL ++ P TPT +P S +T AP+ + T
Sbjct: 1 MSSYALPSMQP----TPTSSIPLRQMSQPTTSAPSNSASST 37
>SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase
Byr2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 659
Score = 25.0 bits (52), Expect = 8.7
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -3
Query: 318 FLPAESTSMLSTPAPARPTTFTS 250
F P S S + P+P PT+ TS
Sbjct: 355 FSPGSSPSFIEQPSPISPTSTTS 377
>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
3|||Manual
Length = 462
Score = 25.0 bits (52), Expect = 8.7
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -3
Query: 363 ALSALAPGALITPTPFLPAESTSMLSTPA 277
+LS + P + +P+P A STS+ S PA
Sbjct: 32 SLSEINPSSFQSPSPSPFASSTSLASKPA 60
>SPAC8C9.06c |||mitochondrial translation regulator
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 931
Score = 25.0 bits (52), Expect = 8.7
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -3
Query: 405 WRARTNINVQVSSHALSALAPGALITPTPFL 313
W+ TN +QV ++ L L P + PFL
Sbjct: 96 WKTSTNPTLQVRAYMLDLLLPFFTLDLLPFL 126
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 25.0 bits (52), Expect = 8.7
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -2
Query: 481 ASELAASVQSPVPPA-SLQRSGSWDHVASQNQHQRAGQLA 365
A + + +S +PP+ SL R+G V++QN RA LA
Sbjct: 191 AKKASVKSKSVLPPSKSLARTGLPAEVSTQNNANRAALLA 230
>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 855
Score = 25.0 bits (52), Expect = 8.7
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 5/37 (13%)
Frame = -1
Query: 491 RGSCQRARCQCTEPGPTC-----QPSAQWKLGPRGEP 396
+G R T P PTC + + W+ P G+P
Sbjct: 618 KGDANTRRANATNPTPTCTNCQTRTTPLWRRSPDGQP 654
>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 781
Score = 25.0 bits (52), Expect = 8.7
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -3
Query: 501 PRMARVLPASSLPVYRARSHLPAFSAVE 418
PR PA+ +PV +R H P S ++
Sbjct: 96 PRQKHTAPATPIPVSASRHHKPHHSGLK 123
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,366,448
Number of Sequences: 5004
Number of extensions: 43616
Number of successful extensions: 179
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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