Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00023
(608 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7265| Best HMM Match : 2-Hacid_dh (HMM E-Value=0.00052) 40 2e-06
SB_12714| Best HMM Match : 2-Hacid_dh (HMM E-Value=2.6e-12) 47 1e-05
SB_36985| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 2e-04
SB_31364| Best HMM Match : 2-Hacid_dh_C (HMM E-Value=1.5e-39) 42 4e-04
SB_51717| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.24
SB_4896| Best HMM Match : TFIID_20kDa (HMM E-Value=2.3e-05) 32 0.32
SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.55
SB_52129| Best HMM Match : Sec23_trunk (HMM E-Value=0) 30 1.3
SB_1163| Best HMM Match : DMA (HMM E-Value=1.4e-11) 30 1.7
SB_42335| Best HMM Match : Hint (HMM E-Value=1.4013e-45) 29 2.2
SB_4699| Best HMM Match : Lig_chan (HMM E-Value=1.1) 29 2.2
SB_58388| Best HMM Match : Lipocalin (HMM E-Value=7.4) 29 3.9
SB_50132| Best HMM Match : Hydrophobin (HMM E-Value=6.1) 29 3.9
SB_7358| Best HMM Match : bZIP_1 (HMM E-Value=1.7) 29 3.9
SB_37047| Best HMM Match : Drf_FH1 (HMM E-Value=4.9) 29 3.9
SB_49662| Best HMM Match : Bromodomain (HMM E-Value=9.8e-38) 28 5.1
SB_21917| Best HMM Match : CXC (HMM E-Value=0.22) 28 5.1
SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22) 28 5.1
SB_5193| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_19775| Best HMM Match : Arm (HMM E-Value=0.27) 28 6.8
SB_19442| Best HMM Match : Beach (HMM E-Value=0) 28 6.8
SB_45977| Best HMM Match : MBT (HMM E-Value=0) 28 6.8
SB_24292| Best HMM Match : LTXXQ (HMM E-Value=1.7) 28 6.8
SB_22497| Best HMM Match : Ras (HMM E-Value=7.7e-07) 28 6.8
SB_17138| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_4520| Best HMM Match : Tsg (HMM E-Value=7.8) 28 6.8
SB_5854| Best HMM Match : Pkinase_Tyr (HMM E-Value=4.3e-17) 27 9.0
SB_55326| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.0
SB_38912| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.0
SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.0
>SB_7265| Best HMM Match : 2-Hacid_dh (HMM E-Value=0.00052)
Length = 126
Score = 40.3 bits (90), Expect(2) = 2e-06
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +3
Query: 57 VDIKSVLIVDGVGAKCAELLNAYGIATTTKAKISKEELLMEIP 185
+++K VLI D V + C +L G+ K+SKEEL+ EIP
Sbjct: 4 LELKRVLISDSVDSCCKTILERNGVTVDVNTKLSKEELVSEIP 46
Score = 28.7 bits (61), Expect(2) = 2e-06
Identities = 11/20 (55%), Positives = 18/20 (90%)
Frame = +3
Query: 189 HDALVVRSATQVTKEVLDAG 248
+D L+VRSAT+V+++V+ AG
Sbjct: 77 YDGLIVRSATKVSEDVIKAG 96
>SB_12714| Best HMM Match : 2-Hacid_dh (HMM E-Value=2.6e-12)
Length = 189
Score = 47.2 bits (107), Expect = 1e-05
Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 4/95 (4%)
Frame = +2
Query: 287 DNIDVDSAGKKGVGVINAPGANALSACELTCTLMLVLARHVVPA-STALKAGRWDRALYT 463
D ID+ +A K+G+ V N PG ++ L+L ARH+V + K G +++
Sbjct: 80 DRIDIPAATKRGIRVGNTPGVVQDCTADMAIGLLLASARHIVTGDANTRKPGFTKESIFN 139
Query: 464 --GSELAGKTLAILGLTG-RPRVATRMYAFGMNII 559
G+ + G TL I+GL VA R F M I+
Sbjct: 140 CFGTRVTGSTLGIVGLGAVGSAVAMRAKGFKMRIL 174
>SB_36985| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 323
Score = 43.2 bits (97), Expect = 2e-04
Identities = 32/101 (31%), Positives = 55/101 (54%), Gaps = 4/101 (3%)
Frame = +2
Query: 287 DNIDVDSAGKKGVGVINAPGANALSACELTCTLMLVLARHVVPASTAL-KAGRWDRAL-- 457
DNID+++A ++G+ V N PG + A + L++ AR+V+ A + K G ++
Sbjct: 84 DNIDLEAAKRRGILVGNTPGISDCLA-DFAWALLMAAARNVIQADAMMRKPGFKIPSIIN 142
Query: 458 YTGSELAGKTLAILGLTG-RPRVATRMYAFGMNIIGFDPFR 577
+ G+ ++G TL I+GL VA R F M I+ ++ R
Sbjct: 143 WHGTRVSGATLGIIGLGNIGLAVAKRAKGFDMRILYYNRTR 183
>SB_31364| Best HMM Match : 2-Hacid_dh_C (HMM E-Value=1.5e-39)
Length = 401
Score = 41.9 bits (94), Expect = 4e-04
Identities = 22/40 (55%), Positives = 29/40 (72%), Gaps = 2/40 (5%)
Frame = +2
Query: 458 YTGSELAGKTLAILGL--TGRPRVATRMYAFGMNIIGFDP 571
+ G+EL GKTLAI+GL GR VA RM ++G+ IG+DP
Sbjct: 1 FMGNELFGKTLAIIGLGRIGR-EVALRMQSYGVKTIGYDP 39
>SB_51717| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 799
Score = 32.7 bits (71), Expect = 0.24
Identities = 23/93 (24%), Positives = 38/93 (40%)
Frame = -3
Query: 546 PKAYILVATRGRPVKPRMARVLPASSLPVYRARSHLPAFSAVEAGTTWRARTNINVQVSS 367
PK ++ R R+ P RA L A +A AGT +R++ +V ++S
Sbjct: 541 PKKRRRISVPRRRAGSAQGRITTKKKTPPRRANL-LEALTAAAAGTPAASRSSSSVSLAS 599
Query: 366 HALSALAPGALITPTPFLPAESTSMLSTPAPAR 268
+ + +TP F P S S + P +
Sbjct: 600 PGMRSSLGSLQLTPPSFTPRSSISRRRSDTPTK 632
>SB_4896| Best HMM Match : TFIID_20kDa (HMM E-Value=2.3e-05)
Length = 819
Score = 32.3 bits (70), Expect = 0.32
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = -3
Query: 372 SSHALSALAPGALITPTPFLPAESTSMLSTPAPARPTT 259
SS +++ +L TP+ P+ ST LSTP P++P+T
Sbjct: 196 SSSSITTTKLSSLSTPSLSTPSLSTPSLSTPLPSKPST 233
>SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 158
Score = 31.5 bits (68), Expect = 0.55
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = -3
Query: 330 TPTPFLPAESTSMLSTPAPARPTTFTSRLR-PTPLWS 223
TPTP P+ + +TP PA PT T + PTP S
Sbjct: 53 TPTPTTPSPTAPTQTTPTPATPTPTTPTPKTPTPTTS 89
Score = 30.7 bits (66), Expect = 0.97
Identities = 16/33 (48%), Positives = 19/33 (57%)
Frame = -3
Query: 330 TPTPFLPAESTSMLSTPAPARPTTFTSRLRPTP 232
TPTP P +TS L+ P PA T T +PTP
Sbjct: 78 TPTPKTPTPTTSTLTKPTPATTPTPT---KPTP 107
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = -3
Query: 327 PTPFLPAESTSMLSTPAPARPTTFTSRL-RPTP 232
PT P +T +TP P PT TS L +PTP
Sbjct: 64 PTQTTPTPATPTPTTPTPKTPTPTTSTLTKPTP 96
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -3
Query: 330 TPTPFLPAESTSMLSTPAPARPT-TFTSRLRPTP 232
TPTP P +T + P+P PT T ++ PTP
Sbjct: 23 TPTPTKPTPTTHTPTKPSPTTPTSTAPTQTTPTP 56
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -3
Query: 330 TPTPFLPAESTSMLSTPAPARPT-TFTSRLRPTP 232
TPT P ++T +TP+P PT T + PTP
Sbjct: 43 TPTSTAPTQTTPTPTTPSPTAPTQTTPTPATPTP 76
>SB_52129| Best HMM Match : Sec23_trunk (HMM E-Value=0)
Length = 942
Score = 30.3 bits (65), Expect = 1.3
Identities = 28/123 (22%), Positives = 53/123 (43%), Gaps = 5/123 (4%)
Frame = -3
Query: 585 QQTRKG--SNPMMFMPKAYILVATRGRPVKPRMARVLPASSLPVYRARSHLPAFSAVEAG 412
QQTR+ S P + P +A+ G+ +P+ R + + + + P +
Sbjct: 156 QQTRQPPRSGPPVQQPYG---MASSGQHAQPQSQRPVQSIAGSTATGQHATPTGHGIPPS 212
Query: 411 TTWRART---NINVQVSSHALSALAPGALITPTPFLPAESTSMLSTPAPARPTTFTSRLR 241
+T +AR + +SSH+ S+ PG+ +P P ++ P+ A P L+
Sbjct: 213 STPQARAPPHSSTQPLSSHSGSSPQPGSAFSPVNTPPNAQAQQMTPPSSAAPPQSLPGLQ 272
Query: 240 PTP 232
+P
Sbjct: 273 TSP 275
>SB_1163| Best HMM Match : DMA (HMM E-Value=1.4e-11)
Length = 403
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = -3
Query: 366 HALSALAPGALITPTPFLPAESTSMLSTPAPARPTTFTSRLRP 238
HA A AP + P P PA STS + TP+P P ++ P
Sbjct: 304 HAPIARAP--IARPLPTSPACSTSRIYTPSPLPPPLLKAKSEP 344
>SB_42335| Best HMM Match : Hint (HMM E-Value=1.4013e-45)
Length = 825
Score = 29.5 bits (63), Expect = 2.2
Identities = 32/109 (29%), Positives = 41/109 (37%), Gaps = 13/109 (11%)
Frame = -3
Query: 522 TRGRPVKPRMARVLPASSLPV-YRARSHLPAFSAVEA-------GTTWRARTNINVQVSS 367
TR PVKP +A P +PV + + LP A GTT R +N
Sbjct: 57 TRSTPVKPAVAPSPPPPGIPVGSKPGAGLPVAPQTGAGKPVAPPGTTIRIAVTVNRTGQP 116
Query: 366 HALSALAPGAL-----ITPTPFLPAESTSMLSTPAPARPTTFTSRLRPT 235
+ PG L T P A + + LSTP T T L P+
Sbjct: 117 EIHPEVHPGPLPPPPAATARPGNQASTANPLSTPVSTTSTKATQGLLPS 165
>SB_4699| Best HMM Match : Lig_chan (HMM E-Value=1.1)
Length = 186
Score = 29.5 bits (63), Expect = 2.2
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +2
Query: 101 VCRTPQRLRNRHHYQGQDLQGRTSYGDTQPR 193
+CR+ + RHH+ L G +SYG P+
Sbjct: 113 LCRSKRPYGLRHHHHASGLMGASSYGMAMPK 143
>SB_58388| Best HMM Match : Lipocalin (HMM E-Value=7.4)
Length = 246
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -3
Query: 354 ALAPGALITPTPFLPAESTSMLSTPAPARPTTFTSRLRPTP 232
A AP + + + P S+ LS+P P P+T +S L P P
Sbjct: 145 AYAPSSTPSSSLLPPPSSSPPLSSPPPPPPSTPSSSLLPPP 185
>SB_50132| Best HMM Match : Hydrophobin (HMM E-Value=6.1)
Length = 114
Score = 28.7 bits (61), Expect = 3.9
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Frame = -3
Query: 372 SSHALSALAPG---ALITPTPFLP-AESTSMLSTPAPARPTTFTSR 247
S +A +A+A G A +TP+ P A STS + + A ARPTT ++
Sbjct: 22 SINATTAIATGTFSATVTPSKTSPVAMSTSAVFSTAAARPTTVNTK 67
>SB_7358| Best HMM Match : bZIP_1 (HMM E-Value=1.7)
Length = 227
Score = 28.7 bits (61), Expect = 3.9
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = -3
Query: 375 VSSHALSALAPGALITPTPFLPAESTSMLST-PAPARPTTFTSRLRPTPLWSLELLNAQP 199
+S H LA G PTP +PA + S+L AR T+ L P P + +L+
Sbjct: 155 LSPHESRLLAKGLKFIPTPPIPASNKSLLKDFKVFARCDFNTNTLIPNPSHTSSMLSLNG 214
Query: 198 ER 193
R
Sbjct: 215 NR 216
>SB_37047| Best HMM Match : Drf_FH1 (HMM E-Value=4.9)
Length = 233
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Frame = -3
Query: 369 SHALSALAPGALITPTPFLPAESTSMLSTPAPARPTTFTS--RLRPTPLWSL 220
+H + P + TP F+P + + P P R T +P P+ SL
Sbjct: 104 AHNMGVAGPSGMATPGTFIPPPPPGVFTPPPPYRTTAKPKGPTKKPPPMMSL 155
>SB_49662| Best HMM Match : Bromodomain (HMM E-Value=9.8e-38)
Length = 1301
Score = 28.3 bits (60), Expect = 5.1
Identities = 22/67 (32%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
Frame = -2
Query: 532 PSGHSRPTXQAKDGE--GLASELAASVQSPVPPASLQRSGSWDHVASQNQHQRAGQLARA 359
P G P Q G G+ S Q P LQR+ S D + QH AG ++R
Sbjct: 712 PQGGVPPRLQGPMGMKVGVGSTEGGMQQMMGYPPRLQRAPSGDQMQRPGQHLPAGFISRF 771
Query: 358 QRIGARS 338
Q G S
Sbjct: 772 QNPGQAS 778
>SB_21917| Best HMM Match : CXC (HMM E-Value=0.22)
Length = 470
Score = 28.3 bits (60), Expect = 5.1
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +2
Query: 302 DSAGKKGVGVINAPGANALSACELTCTLML 391
D G+ GV V +APG C++ CT L
Sbjct: 235 DEMGRAGVTVEHAPGDADYKICQMACTYAL 264
>SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22)
Length = 3445
Score = 28.3 bits (60), Expect = 5.1
Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 3/98 (3%)
Frame = -3
Query: 531 LVATRGRPVKPRMARVLPASSLP---VYRARSHLPAFSAVEAGTTWRARTNINVQVSSHA 361
+V T G + P+ + V P S++ A S + + + + GTT ++T + + ++
Sbjct: 3177 VVTTPGSDITPQTS-VSPDSTVAPESTVAADSTVASETIIAQGTTLASKTTVATETTASP 3235
Query: 360 LSALAPGALITPTPFLPAESTSMLSTPAPARPTTFTSR 247
+ +AP P + EST L+ A P T +R
Sbjct: 3236 ETTVAPVTTAAPETTVAPEST--LAPETTAAPETTLAR 3271
>SB_5193| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 672
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -3
Query: 375 VSSHALSALAPGALITPTPFLPAESTSML 289
+S H L LA G PTP +PA + S+L
Sbjct: 163 LSPHELRLLAKGLKFIPTPPIPASNKSLL 191
>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3486
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +3
Query: 102 CAELLNAYGIATTTKAKISKEELLMEIPNHDALVV 206
C L N Y A+T++ K SKE+++ ++ +VV
Sbjct: 3040 CQTLNNTYSPASTSRVKASKEQIISANSSYAEIVV 3074
>SB_19775| Best HMM Match : Arm (HMM E-Value=0.27)
Length = 607
Score = 27.9 bits (59), Expect = 6.8
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Frame = -3
Query: 489 RVLPASSLPVYRARSHLPAFSAVEAGTTWRARTNINVQVSSHALSALAPGALITPTPF-- 316
R+ PASS A+S +P + ++ ++ T +N + S+H+ + + A + TP
Sbjct: 125 RLKPASSRQEDSAKSIVPDNNKSTTVSSCKSTTAVNSRTSTHSAGSKSSSAAYSRTPASG 184
Query: 315 LPAESTSMLSTPAPA 271
LP +STS S+ A
Sbjct: 185 LP-KSTSTSSSKVTA 198
>SB_19442| Best HMM Match : Beach (HMM E-Value=0)
Length = 796
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = -3
Query: 393 TNINVQVSSHALSALAPGALITPTPFLPAESTSMLSTPAPARPTTFTSRLRP 238
T ++V + + + + G L+TP P+LPA ++ T P+T+ P
Sbjct: 492 TCVDVNAALGLVVSGSQGKLLTPFPYLPAAEYTLPLTSRLIHPSTYKPLYTP 543
>SB_45977| Best HMM Match : MBT (HMM E-Value=0)
Length = 1198
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = -1
Query: 467 CQCTEPGPTCQPSAQWKLGPRGEPEPTSTCRSARTRS 357
C TEP P Q S+ K PE +++ S T S
Sbjct: 168 CSTTEPAPQDQVSSSCKTTETSRPETSTSATSEETNS 204
>SB_24292| Best HMM Match : LTXXQ (HMM E-Value=1.7)
Length = 288
Score = 27.9 bits (59), Expect = 6.8
Identities = 23/91 (25%), Positives = 38/91 (41%)
Frame = -3
Query: 546 PKAYILVATRGRPVKPRMARVLPASSLPVYRARSHLPAFSAVEAGTTWRARTNINVQVSS 367
PK ++ R R+ + P RA L AF+A AGT +R++ ++ ++S
Sbjct: 54 PKKRRRISVPRRRAGSAQGRITNKTKTPPRRANL-LEAFTAT-AGTPAASRSSSSISLAS 111
Query: 366 HALSALAPGALITPTPFLPAESTSMLSTPAP 274
+ + TP F P S S + P
Sbjct: 112 PGMRSSLGSLQRTPPSFTPRSSISRRRSDTP 142
>SB_22497| Best HMM Match : Ras (HMM E-Value=7.7e-07)
Length = 769
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -3
Query: 531 LVATRGRPVKPRMARVLPASSLPVYRAR 448
++ R PVKP +A V+P +S P Y R
Sbjct: 606 IMPNRSNPVKPVVADVIPFASEPQYTVR 633
>SB_17138| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 490
Score = 27.9 bits (59), Expect = 6.8
Identities = 31/91 (34%), Positives = 37/91 (40%), Gaps = 5/91 (5%)
Frame = -2
Query: 580 DTKRVESD-DVHAEGVHPSGHSRPTXQ----AKDGEGLASELAASVQSPVPPASLQRSGS 416
+T R +SD D V S +R T Q A DG S ASV S S
Sbjct: 240 ETSRPDSDYDYDTIDVSLSQRARATKQPQTLASDGSNEPSSKRASVYESTSCTRTVISDS 299
Query: 415 WDHVASQNQHQRAGQLARAQRIGARSVDHSD 323
D V S+N Q A+AQR G S +D
Sbjct: 300 DDEVPSKNNF---SQSAKAQRNGELSDSDND 327
>SB_4520| Best HMM Match : Tsg (HMM E-Value=7.8)
Length = 594
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Frame = +1
Query: 364 VRADLHVDVGSGSPR--GPSFHCAEGWQVGPGSVH-WQRARWQDP 489
VR ++ G G+ GPS AEG ++GP +VH A W++P
Sbjct: 328 VRGPFNLSHGPGNRNRYGPSLVHAEGLRLGPKTVHRILHAVWKNP 372
>SB_5854| Best HMM Match : Pkinase_Tyr (HMM E-Value=4.3e-17)
Length = 1850
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/33 (42%), Positives = 15/33 (45%)
Frame = -3
Query: 372 SSHALSALAPGALITPTPFLPAESTSMLSTPAP 274
S H + PG TP P LP S S PAP
Sbjct: 1593 SLHIRPSDRPGMTATPPPPLPTRRPSSCSRPAP 1625
>SB_55326| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1289
Score = 27.5 bits (58), Expect = 9.0
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = -2
Query: 529 SGHSRPTXQAK-DGEGLASELAASVQSPVPPASLQRSGSWDHVASQNQHQRAGQLARAQR 353
+G + P QA + E S LA + SP PPA+ + V + + +L+RA++
Sbjct: 372 NGSAEPDKQAAHEPERTPSALAERITSPEPPATQPKHPG--RVEAGGRLAELNRLSRAKK 429
Query: 352 IGARSVD 332
I + V+
Sbjct: 430 IATQHVE 436
>SB_38912| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 168
Score = 27.5 bits (58), Expect = 9.0
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +2
Query: 116 QRLRNRHHYQGQDLQGRTSYGDTQPRRSGCAFSNSS 223
+R ++R DL +GD QPRRS F NSS
Sbjct: 87 RRTKSRSSSLKDDLSPFLVFGDWQPRRSERIFINSS 122
>SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3112
Score = 27.5 bits (58), Expect = 9.0
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -1
Query: 467 CQCTEPGPTCQPSAQWKLGPRGEPEPTSTC 378
C+ T P P+C P++Q+ L PR P + C
Sbjct: 819 CEKTSP-PSCIPASQYCLAPRECPPHQTIC 847
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,155,944
Number of Sequences: 59808
Number of extensions: 401726
Number of successful extensions: 1517
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 1266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1498
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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