Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00023
(608 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g17745.1 68414.m02196 D-3-phosphoglycerate dehydrogenase / 3-... 83 1e-16
At4g34200.1 68417.m04854 D-3-phosphoglycerate dehydrogenase, put... 82 2e-16
At3g19480.1 68416.m02469 D-3-phosphoglycerate dehydrogenase, put... 81 7e-16
At1g68010.1 68414.m07769 glycerate dehydrogenase / NADH-dependen... 58 6e-09
At5g14780.1 68418.m01734 formate dehydrogenase (FDH) identical t... 49 2e-06
At1g79870.1 68414.m09330 oxidoreductase family protein contains ... 43 1e-04
At1g72190.1 68414.m08347 oxidoreductase family protein similar t... 40 0.002
At3g28790.1 68416.m03593 expressed protein 35 0.048
At1g65960.1 68414.m07484 glutamate decarboxylase 2 (GAD 2) simil... 30 1.4
At4g35240.1 68417.m05009 expressed protein contains Pfam domains... 29 1.8
At1g15290.1 68414.m01830 tetratricopeptide repeat (TPR)-containi... 29 1.8
At4g31650.1 68417.m04495 transcriptional factor B3 family protei... 29 2.4
At1g59910.1 68414.m06749 formin homology 2 domain-containing pro... 29 2.4
At4g12500.1 68417.m01975 protease inhibitor/seed storage/lipid t... 29 3.2
At2g45000.1 68415.m05603 expressed protein contains Pfam profile... 29 3.2
At1g49870.1 68414.m05591 expressed protein ; expression supporte... 29 3.2
At4g12490.1 68417.m01974 protease inhibitor/seed storage/lipid t... 28 4.2
At4g11420.1 68417.m01840 eukaryotic translation initiation facto... 28 4.2
At5g12920.1 68418.m01482 expressed protein contains 3 weak WD-40... 28 5.6
At5g10690.1 68418.m01237 pentatricopeptide (PPR) repeat-containi... 28 5.6
At3g24550.1 68416.m03083 protein kinase family protein contains ... 28 5.6
At1g13500.1 68414.m01583 hypothetical protein 28 5.6
At5g65450.1 68418.m08231 ubiquitin carboxyl-terminal hydrolase f... 27 7.4
At3g48560.1 68416.m05302 acetolactate synthase, chloroplast / ac... 27 7.4
At1g62970.1 68414.m07110 DNAJ heat shock N-terminal domain-conta... 27 7.4
At5g63260.1 68418.m07940 zinc finger (CCCH-type) family protein ... 27 9.7
At1g33240.1 68414.m04108 trihelix DNA-binding protein, putative ... 27 9.7
At1g06460.1 68414.m00684 31.2 kDa small heat shock family protei... 27 9.7
>At1g17745.1 68414.m02196 D-3-phosphoglycerate dehydrogenase /
3-PGDH identical to SP|O04130
Length = 624
Score = 83.4 bits (197), Expect = 1e-16
Identities = 41/98 (41%), Positives = 61/98 (62%), Gaps = 2/98 (2%)
Frame = +2
Query: 287 DNIDVDSAGKKGVGVINAPGANALSACELTCTLMLVLARHVVPASTALKAGRWDRALYTG 466
DN+D+ +A + G V+NAP AN ++A E L+ +AR+V A ++KAG+W+R+ Y G
Sbjct: 157 DNVDLQAATEHGCLVVNAPTANTVAAAEHGIALLASMARNVAQADASIKAGKWERSKYVG 216
Query: 467 SELAGKTLAILGLTGR--PRVATRMYAFGMNIIGFDPF 574
L GKTLA++G G+ VA R GM +I DP+
Sbjct: 217 VSLVGKTLAVMGF-GKVGTEVARRAKGLGMTVISHDPY 253
Score = 39.5 bits (88), Expect = 0.002
Identities = 24/67 (35%), Positives = 38/67 (56%)
Frame = +3
Query: 72 VLIVDGVGAKCAELLNAYGIATTTKAKISKEELLMEIPNHDALVVRSATQVTKEVLDAGV 251
+L+ + +G LL +G + +S E+L ++ DAL+VRS T+VT+EV +A
Sbjct: 85 ILVTEKLGEAGVNLLREFGDVDCSY-DLSPEDLKKKVAESDALIVRSGTKVTREVFEA-A 142
Query: 252 K*RWSVV 272
K R VV
Sbjct: 143 KGRLKVV 149
>At4g34200.1 68417.m04854 D-3-phosphoglycerate dehydrogenase,
putative / 3-PGDH, putative similar to phosphoglycerate
dehydrogenase, Arabidopsis thaliana, SP:O04130
Length = 603
Score = 82.2 bits (194), Expect = 2e-16
Identities = 43/98 (43%), Positives = 58/98 (59%), Gaps = 2/98 (2%)
Frame = +2
Query: 287 DNIDVDSAGKKGVGVINAPGANALSACELTCTLMLVLARHVVPASTALKAGRWDRALYTG 466
DN+D+ +A + G V+NAP AN ++A E LM +AR+V A ++KAG W R Y G
Sbjct: 136 DNVDLSAATEFGCLVVNAPTANTIAAAEHGIALMAAMARNVAQADASVKAGEWKRNKYVG 195
Query: 467 SELAGKTLAILGLTGR--PRVATRMYAFGMNIIGFDPF 574
L GKTLA+LG G+ VA R GM +I DP+
Sbjct: 196 VSLVGKTLAVLGF-GKVGTEVARRAKGLGMRVIAHDPY 232
Score = 29.5 bits (63), Expect = 1.8
Identities = 14/31 (45%), Positives = 23/31 (74%)
Frame = +3
Query: 153 ISKEELLMEIPNHDALVVRSATQVTKEVLDA 245
++ EEL ++I DAL+VRS T+V +EV ++
Sbjct: 90 MTPEELNIKISLCDALIVRSGTKVGREVFES 120
>At3g19480.1 68416.m02469 D-3-phosphoglycerate dehydrogenase,
putative / 3-PGDH, putative similar to SP:O04130 from
[Arabidopsis thaliana]
Length = 588
Score = 80.6 bits (190), Expect = 7e-16
Identities = 41/98 (41%), Positives = 60/98 (61%), Gaps = 2/98 (2%)
Frame = +2
Query: 287 DNIDVDSAGKKGVGVINAPGANALSACELTCTLMLVLARHVVPASTALKAGRWDRALYTG 466
DN+D+ +A + G V+NAP AN ++A E L+ +AR++ A ++KAG+W R Y G
Sbjct: 121 DNVDLAAATEYGCLVVNAPTANTVAAAEHGIALLTAMARNIAQADASIKAGKWTRNKYVG 180
Query: 467 SELAGKTLAILGLTGR--PRVATRMYAFGMNIIGFDPF 574
L GKTLA+LG G+ VA R GM++I DP+
Sbjct: 181 VSLVGKTLAVLGF-GKVGSEVARRARGLGMHVITHDPY 217
Score = 33.5 bits (73), Expect = 0.11
Identities = 19/59 (32%), Positives = 34/59 (57%)
Frame = +3
Query: 69 SVLIVDGVGAKCAELLNAYGIATTTKAKISKEELLMEIPNHDALVVRSATQVTKEVLDA 245
++L+ + +G +LL Y + +S EEL +I DAL+VRS T+V ++V ++
Sbjct: 48 TILVTEKLGQAGIDLLKKYANVDCSY-DLSLEELCTKISLCDALIVRSGTKVGRDVFES 105
>At1g68010.1 68414.m07769 glycerate dehydrogenase / NADH-dependent
hydroxypyruvate reductase identical to hydroxypyruvate
reductase (HPR) GB:D85339 [Arabidopsis thaliana] (Plant
Cell Physiol 1997 Apr;38(4):449-55)
Length = 386
Score = 57.6 bits (133), Expect = 6e-09
Identities = 33/102 (32%), Positives = 53/102 (51%), Gaps = 5/102 (4%)
Frame = +2
Query: 287 DNIDVDSAGKKGVGVINAPGANALSACELTCTLMLVLARHVVPASTALKAG---RWDRAL 457
+N+DV++A K G+ V N PG + EL +L L AR +V A ++ G W L
Sbjct: 98 NNVDVEAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRGGLYEGWLPHL 157
Query: 458 YTGSELAGKTLAILGL--TGRPRVATRMYAFGMNIIGFDPFR 577
+ G+ L G+T+ ++G G + F MN+I FD ++
Sbjct: 158 FVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYFDLYQ 199
>At5g14780.1 68418.m01734 formate dehydrogenase (FDH) identical to
GI:7677266
Length = 384
Score = 49.2 bits (112), Expect = 2e-06
Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 4/98 (4%)
Frame = +2
Query: 287 DNIDVDSAGKKGVGVINAPGANALSACELTCTLMLVLARHVVPASTALKAGRWDRA--LY 460
D+ID+ +A G+ V G+N +S E +L+L R+ VP + G W+ A Y
Sbjct: 131 DHIDLQAAAAAGLTVAEVTGSNVVSVAEDELMRILILMRNFVPGYNQVVKGEWNVAGIAY 190
Query: 461 TGSELAGKTLAILGLTGR--PRVATRMYAFGMNIIGFD 568
+L GKT+ +G GR + R+ FG N++ D
Sbjct: 191 RAYDLEGKTIGTVG-AGRIGKLLLQRLKPFGCNLLYHD 227
>At1g79870.1 68414.m09330 oxidoreductase family protein contains
Pfam profile: PF02826 D-isomer specific 2-hydroxyacid
dehydrogenase, NAD binding domain; similar to glyoxylate
reductase from Thermococcus litoralis [gi:13515409]
Length = 313
Score = 43.2 bits (97), Expect = 1e-04
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 3/93 (3%)
Frame = +2
Query: 287 DNIDVDSAGKKGVGVINAPGANALSACELTCTLMLVLARHVVPASTALKAGRWDRALY-T 463
D ID+ +KG+ V N P +L L+L L R + +++G+W + +
Sbjct: 79 DKIDLGKCKEKGIRVTNTPDVLTEDVADLAIGLILALLRRLCECDRYVRSGKWKQGEFQL 138
Query: 464 GSELAGKTLAILGLTGR--PRVATRMYAFGMNI 556
++ +GK++ I+GL GR +A R AF I
Sbjct: 139 TTKFSGKSVGIIGL-GRIGTAIAKRAEAFSCPI 170
>At1g72190.1 68414.m08347 oxidoreductase family protein similar to
D-3-phosphoglycerate dehydrogenase from Arabidopsis
thaliana [SP|O04130], glyoxylate reductase from Homo
sapiens (gi:6002730); contains Pfam D-isomer specific
2-hydroxyacid dehydrogenase, NAD binding domain PF02826
Length = 373
Score = 39.5 bits (88), Expect = 0.002
Identities = 32/100 (32%), Positives = 44/100 (44%), Gaps = 4/100 (4%)
Frame = +2
Query: 287 DNIDVDSAGKKGVGVINAPG---ANALSACELTCTLMLVLARHVVPASTALKAGRWDRAL 457
D +D+D+A K G+ V P NA S E+ LML L + +L+
Sbjct: 127 DGVDIDAATKHGIKVARIPSEGTGNAASCSEMAIYLMLGLLKKQNEMQISLRNRLLGEP- 185
Query: 458 YTGSELAGKTLAILGLTG-RPRVATRMYAFGMNIIGFDPF 574
TG L GKT+ ILG +A R+ FG +I F
Sbjct: 186 -TGDTLLGKTVFILGYGNIGIELAKRLKPFGSRVIATKRF 224
>At3g28790.1 68416.m03593 expressed protein
Length = 608
Score = 34.7 bits (76), Expect = 0.048
Identities = 19/42 (45%), Positives = 21/42 (50%)
Frame = -3
Query: 357 SALAPGALITPTPFLPAESTSMLSTPAPARPTTFTSRLRPTP 232
S +P TPTP P ST STP P+ PT T PTP
Sbjct: 271 SGASPSGSPTPTPSTPTPSTPTPSTPTPSTPTPST----PTP 308
Score = 32.3 bits (70), Expect = 0.26
Identities = 20/59 (33%), Positives = 25/59 (42%)
Frame = -3
Query: 429 SAVEAGTTWRARTNINVQVSSHALSALAPGALITPTPFLPAESTSMLSTPAPARPTTFT 253
S +G T++ T + S P TPTP P ST STP P+ PT T
Sbjct: 255 SGGSSGNTYKDTTGSSSGASPSGSPTPTPS---TPTPSTPTPSTPTPSTPTPSTPTPST 310
Score = 30.3 bits (65), Expect = 1.0
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = -3
Query: 330 TPTPFLPAESTSMLSTPAPARP 265
TPTP P ST STPAP+ P
Sbjct: 295 TPTPSTPTPSTPTPSTPAPSTP 316
Score = 29.5 bits (63), Expect = 1.8
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = -3
Query: 330 TPTPFLPAESTSMLSTPAPARPTTFT 253
TPTP P ST STP P+ P T
Sbjct: 290 TPTPSTPTPSTPTPSTPTPSTPAPST 315
>At1g65960.1 68414.m07484 glutamate decarboxylase 2 (GAD 2) similar
to glutamate decarboxylase (gad) GI:294111 from [Petunia
hybrida]
Length = 494
Score = 29.9 bits (64), Expect = 1.4
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = +3
Query: 48 KMVVDIKSVLI-VDGVGAKCAELLNAYGIATTTKAKISKEELLMEI 182
++V DI VL +D + +K ++ + GIA K K ++E+LME+
Sbjct: 431 RLVADISKVLHELDTLPSKISKKMGIEGIAENVKEKKMEKEILMEV 476
>At4g35240.1 68417.m05009 expressed protein contains Pfam domains,
PF04782: Protein of unknown function (DUF632) and
PF04783: Protein of unknown function (DUF630)
Length = 828
Score = 29.5 bits (63), Expect = 1.8
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = -2
Query: 493 GEGLASELAASVQSPVPPASLQRSGSWD 410
G AS AA+ + P PP S RS WD
Sbjct: 252 GSSSASTTAAATKPPPPPPSPPRSNGWD 279
>At1g15290.1 68414.m01830 tetratricopeptide repeat (TPR)-containing
protein ESTs gb|F20110 and gb|F20109 come from this gene;
contains Pfam profile PF00515: TPR Domain
Length = 1558
Score = 29.5 bits (63), Expect = 1.8
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +2
Query: 71 GFDRRRGWRQVCRTPQR-LRNRHHYQGQDLQGRTSYGDTQPRRSGCAFSNSS 223
G R+ RQ +R L N+HH + QD+Q + Y Q G + S SS
Sbjct: 1165 GAGRKSRQRQPDLMKKRMLLNKHHNRNQDVQQQNIYSPLQKTSKGPSLSKSS 1216
>At4g31650.1 68417.m04495 transcriptional factor B3 family protein
low similarity to reproductive meristem gene 1 from
[Brassica oleracea var. botrytis] GI:3170424,
[Arabidopsis thaliana] GI:13604227; contains Pfam
profile PF02362: B3 DNA binding domain
Length = 493
Score = 29.1 bits (62), Expect = 2.4
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = +3
Query: 246 GVK*RWSVVLELVWTTSTSTPPVKRASE*ST 338
GVK SVVLELVW +T+ P K S+ T
Sbjct: 463 GVKAYESVVLELVWEETTTLPMFKFCSKIKT 493
>At1g59910.1 68414.m06749 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02128
Length = 929
Score = 29.1 bits (62), Expect = 2.4
Identities = 17/55 (30%), Positives = 24/55 (43%)
Frame = -3
Query: 339 ALITPTPFLPAESTSMLSTPAPARPTTFTSRLRPTPLWSLELLNAQPERRGWVSP 175
AL TP P + T+ + PAP P TS P P + P ++G +P
Sbjct: 354 ALSASTPLTPGQFTTANAPPAPPGPANQTSPPPPPPPSAAAPPPPPPPKKGPAAP 408
>At4g12500.1 68417.m01975 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to pEARLI
1 (Accession No. L43080): an Arabidopsis member of a
conserved gene family (PGF95-099), Plant Physiol. 109
(4), 1497 (1995); contains Pfam protease inhibitor/seed
storage/LTP family domain PF00234
Length = 177
Score = 28.7 bits (61), Expect = 3.2
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -3
Query: 327 PTPFLPAESTSMLSTPAPARPTTFTSRLRPTPL 229
P+P +P+ S S P P+ PT PTP+
Sbjct: 50 PSPSIPSPSVPTPSVPTPSVPTPSVPSPNPTPV 82
>At2g45000.1 68415.m05603 expressed protein contains Pfam profile:
PF05064 Nsp1-like C-terminal region
Length = 739
Score = 28.7 bits (61), Expect = 3.2
Identities = 21/82 (25%), Positives = 36/82 (43%)
Frame = -3
Query: 495 MARVLPASSLPVYRARSHLPAFSAVEAGTTWRARTNINVQVSSHALSALAPGALITPTPF 316
+A P SS ++ A P+FS + + + +I S + A TP+ F
Sbjct: 236 VASSAPGSSSSIFGATGSSPSFSVASSASG--SSPSIFGATGSSPFFGSSSSAGSTPSLF 293
Query: 315 LPAESTSMLSTPAPARPTTFTS 250
+ S + S+P+P +TF S
Sbjct: 294 ASSSSGATTSSPSPFGVSTFNS 315
>At1g49870.1 68414.m05591 expressed protein ; expression supported
by MPSS
Length = 828
Score = 28.7 bits (61), Expect = 3.2
Identities = 17/67 (25%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Frame = +3
Query: 54 VVDIKSVLI---VDGVGAKCAELLNAYGIATTTKAKISKEELLMEIPNHDALVVRSATQV 224
+ D++S+L+ V G+ + E + G K +++ L E+P+ D+ +V+ +++
Sbjct: 480 IPDLESLLVKKHVSGLEKEVQETIKNCGKMYENVKKPGRKDGLSEVPSLDSCLVKHFSKL 539
Query: 225 TKEVLDA 245
KEV +A
Sbjct: 540 EKEVQEA 546
>At4g12490.1 68417.m01974 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to pEARLI
1 (Accession No. L43080): an Arabidopsis member of a
conserved gene family (PGF95-099), Plant Physiol. 109
(4), 1497 (1995); contains Pfam protease inhibitor/seed
storage/LTP family domain PF00234
Length = 182
Score = 28.3 bits (60), Expect = 4.2
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -3
Query: 327 PTPFLPAESTSMLSTPAPARPTTFTSRLRPTPL 229
P+P++P S S P P+ P+ PTP+
Sbjct: 55 PSPYVPTPSVPSPSVPTPSVPSPSVPSPNPTPV 87
>At4g11420.1 68417.m01840 eukaryotic translation initiation factor 3
subunit 10 / eIF-3 theta / eIF3a (TIF3A1) identical to
eukaryotic translation initiation factor 3 subunit 10
(eIF-3 theta) (Eukaryotic translation initiation factor 3
large subunit) (eIF3a) (p114). [Arabidopsis thaliana]
SWISS-PROT:Q9LD55
Length = 987
Score = 28.3 bits (60), Expect = 4.2
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = -1
Query: 506 SSQGWRGSCQRARCQCTEPGPTCQPSAQWKLGPRGEPEPTSTCRSARTR 360
S++G + R GP + +W GPRG + ST S+R R
Sbjct: 935 SNRGAAQNTDRWTSNRERSGPPAEGGDRWGSGPRGSDDRRSTFGSSRPR 983
>At5g12920.1 68418.m01482 expressed protein contains 3 weak WD-40
repeats (PF00400); low similarity to MEK kinase alpha
(GI:4028547); transcriptional repressor TUP1
(GI:3406654) [Dictyostelium discoideum]; Eukaryotic
translation initiation factor 3 subunit 2 (eIF-3 beta)
(eIF3 p36) (TGF-beta receptor interacting protein 1)
(TRIP-1) (SP:Q38884) [Arabidopsis thaliana]
Length = 442
Score = 27.9 bits (59), Expect = 5.6
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = +1
Query: 355 AERVRADLH-VDVGSGSPRGPSFHCAEGWQVGPGSVHWQRARWQDPRHPWLDXSAAS 522
+E V ++H +DV SP +FH +GW + P WLD S +S
Sbjct: 276 SEIVPKEIHSIDVNPSSPHQLAFHLDDGWSGVLDIYKSEVTHVHCPPPAWLDGSNSS 332
>At5g10690.1 68418.m01237 pentatricopeptide (PPR) repeat-containing
protein / CBS domain-containing protein contains CBS and
PPR domain repeats
Length = 580
Score = 27.9 bits (59), Expect = 5.6
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = -3
Query: 348 APGALITPTPFLPAESTSMLSTPAPARPTTFTSRLRPTPLWSLELLNAQPERRGWV 181
A L+TP P LP+ S P R T ++ R+ PL S +L + + G +
Sbjct: 6 AISTLVTPLPLLPSCSFVPTRRCYPRRATPYSRRINLKPLTSRIVLLTRRRQLGQI 61
>At3g24550.1 68416.m03083 protein kinase family protein contains
Pfam domain PF00069: Protein kinase domain
Length = 652
Score = 27.9 bits (59), Expect = 5.6
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = -3
Query: 345 PGALITPTPFLPAESTSMLSTPAPARPTTFTS-RLRPTP 232
PG+L TP LP S S TP+P PTT ++ R P+P
Sbjct: 70 PGSL---TPPLPQPSPSAPITPSPPSPTTPSNPRSPPSP 105
>At1g13500.1 68414.m01583 hypothetical protein
Length = 386
Score = 27.9 bits (59), Expect = 5.6
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +1
Query: 418 FHCAEGWQVGPGSVHWQRARWQDPRHPWLD 507
F+ + ++G GSV +R +W++ R WL+
Sbjct: 297 FNASGNEKIGLGSVVLERMKWEEERFGWLN 326
>At5g65450.1 68418.m08231 ubiquitin carboxyl-terminal hydrolase
family protein / zinc finger (MYND type) family protein
similar to ubiquitin-specific protease 16 (UBP16)
[Arabidopsis thaliana] GI:11993477; contains Pfam
profiles PF00443: Ubiquitin carboxyl-terminal hydrolase,
PF01753: MYND finger
Length = 731
Score = 27.5 bits (58), Expect = 7.4
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +2
Query: 83 RRGWRQVCRTPQRLRNRHHYQGQDLQGRTSYGDTQPRRSGCAFSNSSD 226
RRG ++ CR+P + Y D + S D R G A+ +SS+
Sbjct: 87 RRGHKEECRSPDYDEEKEEYVQSDYDAKESNVDFPSR--GTAYESSSN 132
>At3g48560.1 68416.m05302 acetolactate synthase, chloroplast /
acetohydroxy-acid synthase (ALS) nearly identical to
SP|P17597 Acetolactate synthase, chloroplast precursor
(EC 2.2.1.6, formerly EC 4.1.3.18) (Acetohydroxy-acid
synthase) (ALS) {Arabidopsis thaliana}
Length = 670
Score = 27.5 bits (58), Expect = 7.4
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Frame = -3
Query: 303 STSMLSTPAPARPT---TFTSRLRP-TPLWSLELLNAQPERRG 187
+T++ +TP+P +PT TF SR P P ++L ER+G
Sbjct: 69 TTNVTTTPSPTKPTKPETFISRFAPDQPRKGADILVEALERQG 111
>At1g62970.1 68414.m07110 DNAJ heat shock N-terminal
domain-containing protein low similarity to AHM1
[Triticum aestivum] GI:6691467; contains Pfam profile
PF00226: DnaJ domain
Length = 797
Score = 27.5 bits (58), Expect = 7.4
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = -1
Query: 524 PLAADXSSQGWRGSCQRARCQCTEPGPTCQPSAQWKLGPRGEPEPTS 384
PL SSQ + Q + P P QPS+ K P +P+P S
Sbjct: 428 PLLVSQSSQRSKPLPVSQSLQNSNPFPVSQPSSNSKPFPVSQPQPAS 474
>At5g63260.1 68418.m07940 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 435
Score = 27.1 bits (57), Expect = 9.7
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = -2
Query: 523 HSRP-TXQAKDGEGL-ASELAASVQSPVPPASLQRSGSWDHVASQNQHQ 383
HSR T QA D G AS +SP+ P+S Q + S +S +Q+Q
Sbjct: 275 HSRGVTPQASDWNGYQASSAYPPERSPLAPSSYQVNNSLAETSSFSQYQ 323
>At1g33240.1 68414.m04108 trihelix DNA-binding protein, putative
similar to GTL1 [Arabidopsis thaliana] GI:2664198
Length = 669
Score = 27.1 bits (57), Expect = 9.7
Identities = 19/71 (26%), Positives = 29/71 (40%)
Frame = -3
Query: 432 FSAVEAGTTWRARTNINVQVSSHALSALAPGALITPTPFLPAESTSMLSTPAPARPTTFT 253
FS +EA T ++++V S A L P + +P P + P +FT
Sbjct: 141 FSQLEALNTTPPSSSLDVTPLSVANPILMPSSSSSPFPVFSQPQPQTQTQPPQTHNVSFT 200
Query: 252 SRLRPTPLWSL 220
P PL S+
Sbjct: 201 PTPPPLPLPSM 211
>At1g06460.1 68414.m00684 31.2 kDa small heat shock family protein /
hsp20 family protein contains Pfam profile: PF00011
Hsp20/alpha crystallin family
Length = 285
Score = 27.1 bits (57), Expect = 9.7
Identities = 14/50 (28%), Positives = 22/50 (44%)
Frame = -3
Query: 480 PASSLPVYRARSHLPAFSAVEAGTTWRARTNINVQVSSHALSALAPGALI 331
P+ S + + R L GT W R+N+ S+ ++ PGA I
Sbjct: 159 PSLSPNLQKERPKLDLPKLANLGTVWSPRSNVAESTHSYVVAIELPGASI 208
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,060,916
Number of Sequences: 28952
Number of extensions: 258314
Number of successful extensions: 947
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 942
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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