Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00020
         (703 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|...   104   1e-23
SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein S3a|S...   103   2e-23
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    33   0.030
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    31   0.12 
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    28   1.5  
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ...    27   3.4  
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb...    27   3.4  
SPCC24B10.11c |||THO complex subunit 7 |Schizosaccharomyces pomb...    27   3.4  
SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box as...    26   4.5  
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe...    25   7.9  
SPAC664.08c |||traub transciption factor family protein |Schizos...    25   7.9  

>SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein
           S3a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 252

 Score =  104 bits (250), Expect = 1e-23
 Identities = 46/90 (51%), Positives = 70/90 (77%)
 Frame = +3

Query: 243 FPQIRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCI 422
           F +++L  E +QG++ L +F+G+ +T+DKLR +V+KWQT IEA+  +KTTDGY+ RVF I
Sbjct: 81  FRKVKLRVEDIQGKSCLTSFNGLSITSDKLRSLVRKWQTTIEADQTIKTTDGYLCRVFVI 140

Query: 423 GFTNKDSLSQRKTCYAQHTQVRAIRKKMWK 512
           GFT + +   +KT YAQ +Q+RAIR+KM++
Sbjct: 141 GFTRRRANQVKKTTYAQSSQIRAIRQKMFQ 170



 Score = 89.8 bits (213), Expect = 3e-19
 Identities = 41/67 (61%), Positives = 52/67 (77%)
 Frame = +1

Query: 55  IVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDA 234
           +VDPF+RK+WYD+KAP+ F  + VG TLVNRT G K A++ LKGR+ EVSLADLQ   D 
Sbjct: 20  VVDPFSRKEWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGRILEVSLADLQ--KDE 77

Query: 235 ERSFRKL 255
           E +FRK+
Sbjct: 78  EHAFRKV 84



 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 17/31 (54%), Positives = 24/31 (77%)
 Frame = +1

Query: 610 IYPLRDVCNPKVKVLKRPRFEISKLMELHGE 702
           I+PL++V   KVK+LK P+ +  KL+ELHGE
Sbjct: 204 IFPLQNVLVRKVKILKAPKHDAQKLLELHGE 234



 Score = 33.1 bits (72), Expect = 0.040
 Identities = 16/52 (30%), Positives = 29/52 (55%)
 Frame = +2

Query: 509 EIITRDVTNSELREVVNKLIPDSIAKDIEKAAMASTLCAMFAIRK*KC*RGP 664
           ++I    ++  +RE+V KLIP+ I ++IE+A  +        +RK K  + P
Sbjct: 170 QVIQNQTSSCSMRELVQKLIPEVIGREIERATGSIFPLQNVLVRKVKILKAP 221


>SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein
           S3a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 252

 Score =  103 bits (247), Expect = 2e-23
 Identities = 45/90 (50%), Positives = 69/90 (76%)
 Frame = +3

Query: 243 FPQIRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCI 422
           F +++L  E +QG++ L +F+G D+T+DKLR +V+KWQ+ IEAN  +KTTDGY+ R+F I
Sbjct: 81  FRKVKLRVEDIQGKSCLTSFNGFDMTSDKLRSLVRKWQSTIEANQTIKTTDGYLCRIFVI 140

Query: 423 GFTNKDSLSQRKTCYAQHTQVRAIRKKMWK 512
           GFT++     +KT YAQ +Q+RAI +KM++
Sbjct: 141 GFTSRRVNQVKKTTYAQSSQIRAIHQKMFQ 170



 Score = 92.7 bits (220), Expect = 5e-20
 Identities = 43/67 (64%), Positives = 52/67 (77%)
 Frame = +1

Query: 55  IVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDA 234
           +VDPF+RKDWYD+KAP+ F  + VG TLVNRT G K A++ LKGR+ EVSLADLQ   D 
Sbjct: 20  VVDPFSRKDWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGRILEVSLADLQ--KDE 77

Query: 235 ERSFRKL 255
           E SFRK+
Sbjct: 78  EHSFRKV 84



 Score = 42.3 bits (95), Expect = 6e-05
 Identities = 18/33 (54%), Positives = 25/33 (75%)
 Frame = +1

Query: 604 HGIYPLRDVCNPKVKVLKRPRFEISKLMELHGE 702
           + IYPL++V   KVK+LK P+ +  KL+ELHGE
Sbjct: 202 NNIYPLQNVFVRKVKILKAPKHDAQKLLELHGE 234



 Score = 29.5 bits (63), Expect = 0.49
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 509 EIITRDVTNSELREVVNKLIPDSIAKDIEKA 601
           ++I        ++E+V KLIP+ I + IEKA
Sbjct: 170 QVIQNQANGCSMKELVQKLIPEVIGRAIEKA 200


>SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1309

 Score = 33.5 bits (73), Expect = 0.030
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = +2

Query: 416  LHWFHQ*GLLEPTQDVLRPAHSGQ--SNQKENVEIITRDVTNSELREVVNKL 565
            LHW+    L+  +Q +  P H+GQ  S  + NVE +   V   E   +++ L
Sbjct: 1162 LHWYSLMSLMGTSQGICIPRHAGQVLSTPRRNVEFVNERVPTPEFSSLLSSL 1213


>SPBC1826.01c |mot1||TATA-binding protein associated factor
           Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 31.5 bits (68), Expect = 0.12
 Identities = 21/52 (40%), Positives = 26/52 (50%)
 Frame = -1

Query: 688 PSTSRSRNGASSTLSLSDCKHRAEGRCHGSLLDVLGNGVRNQLVHHLPEFRV 533
           PSTSR RN   S LS S  KHRA+    GS    +   + N  V  + E R+
Sbjct: 736 PSTSRERNNNISELSNSRTKHRAKDDPKGSFCFSVDEPMLNGDVEFVGEERM 787


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1639

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -1

Query: 658 SSTLSLSDCKHRAEGRCHGSLLDVLGNGVRNQLVHHLPEF 539
           S++   SDC H+ EG C GS  ++   G     +  LP F
Sbjct: 585 SASSENSDCPHK-EGECVGSFCNINAKGSSLNNIPKLPRF 623


>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 308

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +3

Query: 261 IAEYVQGRNVLCNFHGMDLTTDKLRWMV--KKWQTLIEANIDVKTT 392
           +A   Q R V C  H MDL  + LR +V  ++   L+E + D++TT
Sbjct: 109 VANSPQAR-VFCLIHKMDLVQEDLRDLVFEERKAILLETSKDLETT 153


>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 356 LPFFNHPPELIGCEVHAVEVAEHITS 279
           L    H PEL+ C     +VA+H+TS
Sbjct: 181 LQSMGHSPELVQCITCLPDVADHLTS 206


>SPCC24B10.11c |||THO complex subunit 7 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 202

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = +3

Query: 621 ARCLQSESESVEEAPFRDLEVD 686
           +RCL   +++V+EA  RDLE++
Sbjct: 22  SRCLGFAAQNVDEANLRDLEIE 43


>SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box
           associated subunit Sfc1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = -1

Query: 301 KLQSTLRPCTYSAINLICGKTFPRQCQLVDQP 206
           KL STLR   Y+AIN       P Q + VD P
Sbjct: 117 KLDSTLRVLDYNAINKFSIDLTPVQRKHVDMP 148


>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 882

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/46 (26%), Positives = 21/46 (45%)
 Frame = +3

Query: 333 RWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYA 470
           ++    W  L+       T  GYV+R    GFT+  ++ + K  +A
Sbjct: 795 KFATSNWDKLLSRLPVAGTMRGYVVRFVTSGFTHASAIDKIKEFFA 840


>SPAC664.08c |||traub transciption factor family protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 452

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +3

Query: 312 DLTTD-KLRWMVKKWQTLIEANIDVKTTDGYVLR 410
           D T D  +RWM  K Q   + N+D K + G  +R
Sbjct: 351 DSTRDGTVRWMATKKQKQKKENVDTKASKGRKIR 384


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,931,721
Number of Sequences: 5004
Number of extensions: 61869
Number of successful extensions: 174
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)