Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00020
(703 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0043 + 5242496-5242554,5242673-5242778,5243586-5243723,524... 127 1e-29
02_02_0482 - 10819562-10819813,10820773-10820952,10822073-108221... 125 3e-29
12_02_0012 - 12309332-12310228,12311087-12311669,12311945-123120... 124 5e-29
04_04_0788 + 28064684-28066584,28066692-28066815,28066908-280672... 38 0.006
06_03_0290 - 19193707-19193752,19193822-19194090 28 6.2
01_05_0073 - 17899175-17899756 28 6.2
10_08_1045 - 22535516-22535593,22535681-22535756,22535843-225359... 28 8.3
03_05_0791 + 27736978-27737217,27737648-27739191,27739512-277397... 28 8.3
>03_02_0043 +
5242496-5242554,5242673-5242778,5243586-5243723,
5243794-5243979,5244075-5244275,5244362-5244460
Length = 262
Score = 127 bits (306), Expect = 1e-29
Identities = 58/90 (64%), Positives = 73/90 (81%)
Frame = +3
Query: 237 KVFPQIRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVF 416
+ + +IRL AE VQG+NVL NF GM TTDKLR +VKKWQTLIEA++DVKTTDGY+LR+F
Sbjct: 79 QAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDGYMLRLF 138
Query: 417 CIGFTNKDSLSQRKTCYAQHTQVRAIRKKM 506
CIGFT + ++TCYAQ +Q+R IR+KM
Sbjct: 139 CIGFTKRRPNQVKRTCYAQASQIRQIRRKM 168
Score = 101 bits (241), Expect = 7e-22
Identities = 47/66 (71%), Positives = 57/66 (86%)
Frame = +1
Query: 58 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAE 237
VDPF +KDWYD+KAPS+F+ R +G TLV+RTQGTKIASEGLK RVFEVSLADLQ D D
Sbjct: 21 VDPFAKKDWYDIKAPSVFNVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED-- 78
Query: 238 RSFRKL 255
+++RK+
Sbjct: 79 QAYRKI 84
Score = 43.2 bits (97), Expect = 2e-04
Identities = 17/31 (54%), Positives = 26/31 (83%)
Frame = +1
Query: 610 IYPLRDVCNPKVKVLKRPRFEISKLMELHGE 702
I+PL++V KVK+LK P+F++ KLME+HG+
Sbjct: 204 IFPLQNVFVRKVKILKAPKFDLGKLMEVHGD 234
Score = 38.3 bits (85), Expect = 0.006
Identities = 19/57 (33%), Positives = 34/57 (59%)
Frame = +2
Query: 494 QKENVEIITRDVTNSELREVVNKLIPDSIAKDIEKAAMASTLCAMFAIRK*KC*RGP 664
+++ VEI+ ++ +L+E+V+K IP+ I K+IEKA + +RK K + P
Sbjct: 165 RRKMVEIMANQASSCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVFVRKVKILKAP 221
>02_02_0482 -
10819562-10819813,10820773-10820952,10822073-10822150,
10823056-10823256,10823365-10823550,10823646-10823783,
10824396-10824501,10824634-10824692
Length = 399
Score = 125 bits (302), Expect = 3e-29
Identities = 57/90 (63%), Positives = 72/90 (80%)
Frame = +3
Query: 237 KVFPQIRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVF 416
+ + ++RL AE VQGRNVL NF GM TTDKLR +VKKWQTLIEA++DVKTTD Y+LR+F
Sbjct: 79 QAYRKVRLRAEDVQGRNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLF 138
Query: 417 CIGFTNKDSLSQRKTCYAQHTQVRAIRKKM 506
CIGFT + ++TCYAQ +Q+R IR+KM
Sbjct: 139 CIGFTKRRPNQVKRTCYAQASQIRQIRRKM 168
Score = 101 bits (241), Expect = 7e-22
Identities = 47/66 (71%), Positives = 58/66 (87%)
Frame = +1
Query: 58 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAE 237
VDPF++KDWYD+KAP++FS R +G TLV+RTQGTKIASEGLK RVFEVSLADLQ D D
Sbjct: 21 VDPFSKKDWYDIKAPTVFSVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED-- 78
Query: 238 RSFRKL 255
+++RK+
Sbjct: 79 QAYRKV 84
Score = 43.2 bits (97), Expect = 2e-04
Identities = 17/31 (54%), Positives = 26/31 (83%)
Frame = +1
Query: 610 IYPLRDVCNPKVKVLKRPRFEISKLMELHGE 702
I+PL++V KVK+LK P+F++ KLME+HG+
Sbjct: 204 IFPLQNVFIRKVKILKAPKFDLGKLMEVHGD 234
Score = 37.1 bits (82), Expect = 0.013
Identities = 19/57 (33%), Positives = 33/57 (57%)
Frame = +2
Query: 494 QKENVEIITRDVTNSELREVVNKLIPDSIAKDIEKAAMASTLCAMFAIRK*KC*RGP 664
+++ VEI+ + +L+E+V+K IP+ I K+IEK+ + IRK K + P
Sbjct: 165 RRKMVEIMANQASTCDLKELVSKFIPEVIGKEIEKSTSSIFPLQNVFIRKVKILKAP 221
>12_02_0012 -
12309332-12310228,12311087-12311669,12311945-12312051,
12313190-12313237,12315139-12315216,12315300-12315500,
12315612-12315797,12315870-12316007,12318311-12318416,
12318529-12318587
Length = 800
Score = 124 bits (300), Expect = 5e-29
Identities = 57/90 (63%), Positives = 72/90 (80%)
Frame = +3
Query: 237 KVFPQIRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVF 416
+ + +IRL AE VQG+NVL NF GM TTDKLR +VKKWQTLIEA++DVKTTD Y+LR+F
Sbjct: 79 QAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLF 138
Query: 417 CIGFTNKDSLSQRKTCYAQHTQVRAIRKKM 506
CIGFT + ++TCYAQ +Q+R IR+KM
Sbjct: 139 CIGFTKRRPNQVKRTCYAQASQIRQIRRKM 168
Score = 101 bits (242), Expect = 6e-22
Identities = 48/66 (72%), Positives = 57/66 (86%)
Frame = +1
Query: 58 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAE 237
VDPF +KDWYD+KAPS+F+ R VG TLV+RTQGTKIASEGLK RVFEVSLADLQ D D
Sbjct: 21 VDPFAKKDWYDIKAPSVFNVRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED-- 78
Query: 238 RSFRKL 255
+++RK+
Sbjct: 79 QAYRKI 84
Score = 43.2 bits (97), Expect = 2e-04
Identities = 17/31 (54%), Positives = 26/31 (83%)
Frame = +1
Query: 610 IYPLRDVCNPKVKVLKRPRFEISKLMELHGE 702
I+PL++V KVK+LK P+F++ KLME+HG+
Sbjct: 204 IFPLQNVFVRKVKILKAPKFDLGKLMEVHGD 234
Score = 38.3 bits (85), Expect = 0.006
Identities = 19/57 (33%), Positives = 34/57 (59%)
Frame = +2
Query: 494 QKENVEIITRDVTNSELREVVNKLIPDSIAKDIEKAAMASTLCAMFAIRK*KC*RGP 664
+++ VEI+ ++ +L+E+V+K IP+ I K+IEKA + +RK K + P
Sbjct: 165 RRKMVEIMVNQASSCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVFVRKVKILKAP 221
>04_04_0788 +
28064684-28066584,28066692-28066815,28066908-28067285,
28067286-28067488,28067615-28067897
Length = 962
Score = 38.3 bits (85), Expect = 0.006
Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Frame = +3
Query: 288 VLCNFHGMDLTTDKLRWM-VKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTC 464
++C+ L KL + + KW+ L+ I + G+V+R+ C+ F ++ L ++K
Sbjct: 332 LVCSLSIRSLANKKLSGLHLWKWELLVFVLICGRLVSGWVIRI-CVFFVERNFLLRKKVL 390
Query: 465 YAQHTQVRAIRKKMWKSL 518
Y + RA+R +W L
Sbjct: 391 YFVYGVRRAVRNVLWLGL 408
>06_03_0290 - 19193707-19193752,19193822-19194090
Length = 104
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 292 SATSTAWTSQPISSGGWLKNGRLSSKPTLM 381
+A S A T P S GW+ G S+ P+L+
Sbjct: 67 AAGSAARTRSPSQSNGWITGGSASAMPSLV 96
>01_05_0073 - 17899175-17899756
Length = 193
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = +3
Query: 591 SRRLPWHLPSARCLQSESESVEEAPFRDLEVDGTS 695
SRRL W L +RC S P RD+ V TS
Sbjct: 145 SRRLQWRLRHSRCASFSSPDQRSCP-RDIAVHKTS 178
>10_08_1045 -
22535516-22535593,22535681-22535756,22535843-22535946,
22536048-22536176,22536539-22536700,22537029-22537259,
22537345-22537428,22537515-22537583,22537671-22537739,
22537827-22537889,22537913-22538052,22538527-22539097
Length = 591
Score = 27.9 bits (59), Expect = 8.3
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +2
Query: 383 EDNRWIRSTCLLHWFHQ*GLLEPTQDVLRPAHSGQSNQKENVEIITRDVTNSELRE 550
E+N WI S H+F +++ + + S Q + +NV+ ITRD S+ E
Sbjct: 220 ENNLWI-SMMYEHYFGPANIVDDITLAIECSKSSQIQKDKNVQDITRDSEESKQSE 274
>03_05_0791 +
27736978-27737217,27737648-27739191,27739512-27739763,
27739844-27739954,27740042-27740102,27740373-27740558
Length = 797
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -2
Query: 201 NFENSSLQSFRSNFRSLGTVDKRGADLPLAE 109
+FENS LQSF +L + K+G P E
Sbjct: 216 SFENSELQSFTDKIENLSSSQKKGYFKPKRE 246
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,779,166
Number of Sequences: 37544
Number of extensions: 433407
Number of successful extensions: 1276
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1275
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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