Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00019
         (405 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1921.01c |rpl3701|rpl37-1, rpl37|60S ribosomal protein L37|S...    72   3e-14
SPCP31B10.08c |rpl35a|rpl33|60S ribosomal protein L35a|Schizosac...    72   4e-14
SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces pom...    27   1.1  

>SPBC1921.01c |rpl3701|rpl37-1, rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 108

 Score = 72.1 bits (169), Expect = 3e-14
 Identities = 36/84 (42%), Positives = 50/84 (59%)
 Frame = +1

Query: 4   RLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGP 183
           RLY KA    ++R     H  T+L+K+EG   + +A FY GK   +VY++ K  P+ G  
Sbjct: 7   RLYVKAKHLSFQRSKHVIHPGTSLVKIEGCDSKEEAQFYLGKRICFVYKSNK--PVRG-- 62

Query: 184 RGKKTKLRAIWGKVTRPHGNSGSV 255
               +K+R IWG V+RPHGNSG V
Sbjct: 63  ----SKIRVIWGTVSRPHGNSGVV 82



 Score = 34.7 bits (76), Expect = 0.006
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = +3

Query: 255 RAKFKSNLPAQAMGHRIRVMLYPSRI 332
           RA+F  NLP +  G  +RVMLYPS +
Sbjct: 83  RARFTHNLPPKTFGASLRVMLYPSNV 108


>SPCP31B10.08c |rpl35a|rpl33|60S ribosomal protein
           L35a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 108

 Score = 71.7 bits (168), Expect = 4e-14
 Identities = 35/84 (41%), Positives = 49/84 (58%)
 Frame = +1

Query: 4   RLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGP 183
           RLY KA    ++R     H  T+++K+EG   + +A FY GK   YVY++ K        
Sbjct: 7   RLYVKAKHLSFQRSKHVIHPGTSIVKIEGCDSKEEAQFYLGKRVCYVYKSSKAV------ 60

Query: 184 RGKKTKLRAIWGKVTRPHGNSGSV 255
           RG  +K+R IWG + RPHGNSG+V
Sbjct: 61  RG--SKIRVIWGTIARPHGNSGAV 82



 Score = 37.1 bits (82), Expect = 0.001
 Identities = 16/26 (61%), Positives = 19/26 (73%)
 Frame = +3

Query: 255 RAKFKSNLPAQAMGHRIRVMLYPSRI 332
           RA+F  NLPA+  G  +RVMLYPS I
Sbjct: 83  RARFVHNLPAKTFGSSLRVMLYPSNI 108


>SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 453

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = -1

Query: 225 HLAPDSTQLGFFATGTSGNWCPLLSSVHIDAMLAS 121
           ++ P  T LGFF   T  N  P    VH  +M AS
Sbjct: 333 NIIPVETALGFFTDNTPENPLPTSYQVHSHSMKAS 367


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,622,768
Number of Sequences: 5004
Number of extensions: 32963
Number of successful extensions: 90
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)