Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00019
(405 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0995 + 33377933-33378000,33378099-33378327,33378410-33378451 87 7e-18
05_07_0069 + 27475072-27475136,27475237-27475465,27475532-274756... 86 9e-18
05_07_0061 + 27420442-27420506,27420619-27420847,27420968-27421009 86 1e-17
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336... 30 0.80
07_03_0529 - 19107949-19108152,19108857-19109147,19109817-191099... 29 1.4
12_01_0899 - 8689125-8689383,8689540-8689826 29 1.8
09_04_0201 + 15543318-15543488,15543956-15544069 29 1.8
07_01_0308 + 2203597-2203774,2203886-2204066,2204141-2204282,220... 29 1.8
04_03_0827 - 20108937-20109046,20109146-20109234,20109400-201095... 29 1.8
04_01_0053 + 551027-553024 28 2.4
04_04_1576 - 34551095-34552645 27 4.3
11_02_0056 + 7828453-7828717,7829425-7829427,7829658-7829912,782... 26 9.9
05_01_0160 + 1081416-1081647,1081840-1082012,1082169-1082246,108... 26 9.9
02_05_0862 - 32305562-32305654,32305935-32306033,32306178-323062... 26 9.9
>02_05_0995 + 33377933-33378000,33378099-33378327,33378410-33378451
Length = 112
Score = 86.6 bits (205), Expect = 7e-18
Identities = 41/84 (48%), Positives = 53/84 (63%)
Frame = +1
Query: 4 RLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGP 183
RLY + GYKR NQ+ENT+L+++EG + + +Y GK YVY+AK ++ GG
Sbjct: 11 RLYVRGTILGYKRSKSNQYENTSLVQIEGVNTKEEVAWYCGKRMAYVYKAKTKS---GG- 66
Query: 184 RGKKTKLRAIWGKVTRPHGNSGSV 255
T R IWGKVTRPHGNSG V
Sbjct: 67 ----TNYRCIWGKVTRPHGNSGVV 86
Score = 42.7 bits (96), Expect = 1e-04
Identities = 20/42 (47%), Positives = 25/42 (59%)
Frame = +3
Query: 207 CYLGQGDPPTWQLWQCRAKFKSNLPAQAMGHRIRVMLYPSRI 332
C G+ P RAKFKSNLP +MG ++RV +YPS I
Sbjct: 71 CIWGKVTRPHGNSGVVRAKFKSNLPPASMGRKVRVFMYPSSI 112
>05_07_0069 +
27475072-27475136,27475237-27475465,27475532-27475630,
27476172-27476287,27476670-27476757
Length = 198
Score = 86.2 bits (204), Expect = 9e-18
Identities = 43/99 (43%), Positives = 57/99 (57%), Gaps = 2/99 (2%)
Frame = +1
Query: 4 RLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGP 183
RLY + GYKR NQ+ENT+LL++EG + + +YAGK YVY+AK ++
Sbjct: 10 RLYVRGTILGYKRSKSNQYENTSLLQIEGVNTKEEVGWYAGKRIAYVYKAKTKS------ 63
Query: 184 RGKKTKLRAIWGKVTRPHGNSGSVEPS--SSLTSLPRLW 294
+ +R IWGKVTRPHGNSG V S+L W
Sbjct: 64 --NDSTIRCIWGKVTRPHGNSGVVRAKFRSNLPPTSMFW 100
>05_07_0061 + 27420442-27420506,27420619-27420847,27420968-27421009
Length = 111
Score = 85.8 bits (203), Expect = 1e-17
Identities = 40/84 (47%), Positives = 53/84 (63%)
Frame = +1
Query: 4 RLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGP 183
RLY + GYKR NQ+ENT+LL++EG + + +YAGK YVY+AK ++
Sbjct: 10 RLYVRGTILGYKRSKSNQYENTSLLQIEGVNTKEEVGWYAGKRIAYVYKAKTKS------ 63
Query: 184 RGKKTKLRAIWGKVTRPHGNSGSV 255
+ +R IWGKVTRPHGNSG V
Sbjct: 64 --NDSTIRCIWGKVTRPHGNSGVV 85
Score = 41.1 bits (92), Expect = 3e-04
Identities = 19/42 (45%), Positives = 25/42 (59%)
Frame = +3
Query: 207 CYLGQGDPPTWQLWQCRAKFKSNLPAQAMGHRIRVMLYPSRI 332
C G+ P RAKF+SNLP +MG ++RV +YPS I
Sbjct: 70 CIWGKVTRPHGNSGVVRAKFRSNLPPTSMGKKVRVFMYPSSI 111
>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
33643-34147,34250-34358,34436-34548,34619-34806,
35481-36129,36169-36691,36760-36911,37042-37141,
37301-37416
Length = 1530
Score = 29.9 bits (64), Expect = 0.80
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = -2
Query: 305 YSVSHSLGREVRLELGSTLPELPCGRVTLPQIARSLVFLPRGPP 174
+ + H + RE L + LP LP G LP A LP GPP
Sbjct: 1104 HDLQHEIDREQALADQNELPPLPDGPPPLPLDAPPPPPLPEGPP 1147
>07_03_0529 -
19107949-19108152,19108857-19109147,19109817-19109939,
19110019-19110306
Length = 301
Score = 29.1 bits (62), Expect = 1.4
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = -2
Query: 326 GRIQHHSYSVSHSLGREVRLE 264
GR+ HHS+ VS L R VRLE
Sbjct: 124 GRVLHHSFPVSLFLPRNVRLE 144
>12_01_0899 - 8689125-8689383,8689540-8689826
Length = 181
Score = 28.7 bits (61), Expect = 1.8
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -2
Query: 251 LPELPCGRVTLPQIARSLVFLPRGPP 174
LPE PC R+ LP+ + LP PP
Sbjct: 35 LPEPPCARLLLPEPPWGMAALPPEPP 60
>09_04_0201 + 15543318-15543488,15543956-15544069
Length = 94
Score = 28.7 bits (61), Expect = 1.8
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -2
Query: 233 GRVTLPQIARSLVFLPRGPPGIGVLFL 153
GR+ PQ + S V PRG PG+ VL L
Sbjct: 6 GRLPRPQGSSSAVPRPRGLPGVSVLLL 32
>07_01_0308 +
2203597-2203774,2203886-2204066,2204141-2204282,
2204371-2204440,2204546-2204715
Length = 246
Score = 28.7 bits (61), Expect = 1.8
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -1
Query: 198 GFFATGTSGNWCPLLSSVHIDAMLA 124
GFFA G+WC LL+ ++I + A
Sbjct: 171 GFFAAAIIGSWCNLLTVIYIGFVCA 195
>04_03_0827 -
20108937-20109046,20109146-20109234,20109400-20109548,
20109801-20109942,20110530-20110645,20111141-20111458
Length = 307
Score = 28.7 bits (61), Expect = 1.8
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = -2
Query: 191 LPRGPPGIGVLFLALYT*TQCLPA*KTASLRSFAPSTLRRAVFSCWLRRPR 39
+P+ PPG LA + Q L R+FA T A SC +RR R
Sbjct: 87 VPQPPPGADPNALASFKQAQALAGGPLVQARNFAVMTGANAGISCVMRRIR 137
>04_01_0053 + 551027-553024
Length = 665
Score = 28.3 bits (60), Expect = 2.4
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 5/35 (14%)
Frame = -1
Query: 240 AMWAGHLA-----PDSTQLGFFATGTSGNWCPLLS 151
A++AGHL P+ +GFFA+G+ G LLS
Sbjct: 231 AIFAGHLTMSNRVPNKAYIGFFASGSDGETYGLLS 265
>04_04_1576 - 34551095-34552645
Length = 516
Score = 27.5 bits (58), Expect = 4.3
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -3
Query: 151 LCTHRRNACQHKRLHHYGLLLL 86
LC H AC RLH +GL LL
Sbjct: 77 LCNHLLIACFKSRLHRHGLRLL 98
>11_02_0056 +
7828453-7828717,7829425-7829427,7829658-7829912,
7829997-7830124,7831063-7831207,7832178-7832275,
7833253-7833395,7835119-7835239,7835492-7835584,
7835712-7835828
Length = 455
Score = 26.2 bits (55), Expect = 9.9
Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +1
Query: 82 VEGAKDRNDAVFYAGKHC-VYVYRAKKRTPIPGGPRGKKTKLR 207
++ ++ V A +H + V + K +TP+P G +KLR
Sbjct: 222 LQDGREFEGTVLNADRHSDIAVVKIKSKTPLPSANLGSSSKLR 264
>05_01_0160 +
1081416-1081647,1081840-1082012,1082169-1082246,
1082372-1082529,1082558-1082709,1083232-1083290,
1083633-1083912,1084235-1084470,1084601-1084744,
1084845-1085012
Length = 559
Score = 26.2 bits (55), Expect = 9.9
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 3/30 (10%)
Frame = -3
Query: 298 CPIAWAGR---LDLNLARHCQSCHVGGSPC 218
CP+ R + N+ RH Q H GSPC
Sbjct: 318 CPMEGCNRKFTIKGNIQRHVQEMHKDGSPC 347
>02_05_0862 -
32305562-32305654,32305935-32306033,32306178-32306259,
32307407-32307764,32308745-32309521,32309612-32309716,
32309803-32309911,32311016-32311024
Length = 543
Score = 26.2 bits (55), Expect = 9.9
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +1
Query: 181 PRGKKTKLRAIWGKVTRPHGNSGSVEPSSSLTSLPRLWD 297
P+G ++ + G R +G SG V P ++ LP W+
Sbjct: 158 PKGWSSERVPLGGGTNRRYGGSGVVLPFNNGRKLPSKWE 196
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,606,098
Number of Sequences: 37544
Number of extensions: 263109
Number of successful extensions: 708
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 706675332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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