Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00019
         (405 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41264-2|AAA82422.1|  124|Caenorhabditis elegans Ribosomal prote...   108   2e-24
Z81534-7|CAN86914.1| 3653|Caenorhabditis elegans Hypothetical pr...    29   0.96 
Z81534-6|CAN86913.1| 3719|Caenorhabditis elegans Hypothetical pr...    29   0.96 
Z49130-10|CAD59157.2| 3653|Caenorhabditis elegans Hypothetical p...    29   0.96 
Z49130-9|CAA88964.2| 3719|Caenorhabditis elegans Hypothetical pr...    29   0.96 
AL032667-2|CAN86634.1| 3653|Caenorhabditis elegans Hypothetical ...    29   0.96 
AL032667-1|CAN86633.1| 3719|Caenorhabditis elegans Hypothetical ...    29   0.96 
AC006708-12|AAT81173.1|  908|Caenorhabditis elegans Hypothetical...    29   1.7  
AC006708-11|AAF60426.2| 1019|Caenorhabditis elegans Hypothetical...    29   1.7  
AL021482-3|CAA16340.3| 1499|Caenorhabditis elegans Hypothetical ...    27   3.9  
AF177199-1|AAK81894.1| 1455|Caenorhabditis elegans mutant dosage...    27   3.9  
AL021473-1|CAA16305.1|  570|Caenorhabditis elegans Hypothetical ...    27   5.1  
U53336-7|AAA96179.1|  642|Caenorhabditis elegans Hypothetical pr...    27   6.8  
Z81536-11|CAB04363.2|  295|Caenorhabditis elegans Hypothetical p...    26   9.0  

>U41264-2|AAA82422.1|  124|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 33 protein.
          Length = 124

 Score =  108 bits (259), Expect = 2e-24
 Identities = 50/85 (58%), Positives = 64/85 (75%)
 Frame = +1

Query: 1   GRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGG 180
           GRLY KA+FTG+KRGLR Q E+T+LLK+EG  ++ DA FYAGK  VY+Y+A  +T   G 
Sbjct: 16  GRLYVKAIFTGFKRGLRTQSEHTSLLKLEGVFNKEDAGFYAGKRVVYLYKAHNKTLKTG- 74

Query: 181 PRGKKTKLRAIWGKVTRPHGNSGSV 255
                T+ RAIWGK+TRPHGN+G+V
Sbjct: 75  -HTVATRTRAIWGKITRPHGNAGAV 98



 Score = 39.9 bits (89), Expect = 7e-04
 Identities = 17/26 (65%), Positives = 20/26 (76%)
 Frame = +3

Query: 255 RAKFKSNLPAQAMGHRIRVMLYPSRI 332
           RAKF  N+P  A+G RIRV+LYPS I
Sbjct: 99  RAKFHHNIPPSALGKRIRVLLYPSNI 124


>Z81534-7|CAN86914.1| 3653|Caenorhabditis elegans Hypothetical
           protein T06D8.1b protein.
          Length = 3653

 Score = 29.5 bits (63), Expect = 0.96
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = +1

Query: 52  NQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTK 201
           N  E     KVE AKD+        KHCV  ++A+   P+   P   K K
Sbjct: 534 NDQEPAVATKVEMAKDKEGVKTTQRKHCVIKFQAR---PLSDRPENLKAK 580


>Z81534-6|CAN86913.1| 3719|Caenorhabditis elegans Hypothetical
           protein T06D8.1a protein.
          Length = 3719

 Score = 29.5 bits (63), Expect = 0.96
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = +1

Query: 52  NQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTK 201
           N  E     KVE AKD+        KHCV  ++A+   P+   P   K K
Sbjct: 534 NDQEPAVATKVEMAKDKEGVKTTQRKHCVIKFQAR---PLSDRPENLKAK 580


>Z49130-10|CAD59157.2| 3653|Caenorhabditis elegans Hypothetical
           protein T06D8.1b protein.
          Length = 3653

 Score = 29.5 bits (63), Expect = 0.96
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = +1

Query: 52  NQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTK 201
           N  E     KVE AKD+        KHCV  ++A+   P+   P   K K
Sbjct: 534 NDQEPAVATKVEMAKDKEGVKTTQRKHCVIKFQAR---PLSDRPENLKAK 580


>Z49130-9|CAA88964.2| 3719|Caenorhabditis elegans Hypothetical
           protein T06D8.1a protein.
          Length = 3719

 Score = 29.5 bits (63), Expect = 0.96
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = +1

Query: 52  NQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTK 201
           N  E     KVE AKD+        KHCV  ++A+   P+   P   K K
Sbjct: 534 NDQEPAVATKVEMAKDKEGVKTTQRKHCVIKFQAR---PLSDRPENLKAK 580


>AL032667-2|CAN86634.1| 3653|Caenorhabditis elegans Hypothetical
           protein T06D8.1b protein.
          Length = 3653

 Score = 29.5 bits (63), Expect = 0.96
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = +1

Query: 52  NQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTK 201
           N  E     KVE AKD+        KHCV  ++A+   P+   P   K K
Sbjct: 534 NDQEPAVATKVEMAKDKEGVKTTQRKHCVIKFQAR---PLSDRPENLKAK 580


>AL032667-1|CAN86633.1| 3719|Caenorhabditis elegans Hypothetical
           protein T06D8.1a protein.
          Length = 3719

 Score = 29.5 bits (63), Expect = 0.96
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = +1

Query: 52  NQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTK 201
           N  E     KVE AKD+        KHCV  ++A+   P+   P   K K
Sbjct: 534 NDQEPAVATKVEMAKDKEGVKTTQRKHCVIKFQAR---PLSDRPENLKAK 580


>AC006708-12|AAT81173.1|  908|Caenorhabditis elegans Hypothetical
           protein Y110A7A.9b protein.
          Length = 908

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -1

Query: 234 WAGHLAPDSTQLGFFATGTSGNWCPLLSSV-HIDAMLASI 118
           W GHLA ++ Q+   A  +  NW  ++ +    DA+LA +
Sbjct: 852 WIGHLADEAKQIRVLAEASRRNWPDVVEATSSADAILARL 891


>AC006708-11|AAF60426.2| 1019|Caenorhabditis elegans Hypothetical
            protein Y110A7A.9a protein.
          Length = 1019

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -1

Query: 234  WAGHLAPDSTQLGFFATGTSGNWCPLLSSV-HIDAMLASI 118
            W GHLA ++ Q+   A  +  NW  ++ +    DA+LA +
Sbjct: 963  WIGHLADEAKQIRVLAEASRRNWPDVVEATSSADAILARL 1002


>AL021482-3|CAA16340.3| 1499|Caenorhabditis elegans Hypothetical
           protein Y39A1B.3 protein.
          Length = 1499

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 17/47 (36%), Positives = 27/47 (57%)
 Frame = +2

Query: 23  YSQDISVVYATSTRTPLSSRLKEQKTVMMQSFMLASIASMCTELRRG 163
           +S D+ +V+A S    L+ RL    TV +Q ++  SIAS   + +RG
Sbjct: 141 HSVDVELVHAVSMFVILTQRL----TVQLQLYVSKSIASANQQAKRG 183


>AF177199-1|AAK81894.1| 1455|Caenorhabditis elegans mutant dosage
           compensation protein protein.
          Length = 1455

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 17/47 (36%), Positives = 27/47 (57%)
 Frame = +2

Query: 23  YSQDISVVYATSTRTPLSSRLKEQKTVMMQSFMLASIASMCTELRRG 163
           +S D+ +V+A S    L+ RL    TV +Q ++  SIAS   + +RG
Sbjct: 141 HSVDVELVHAVSMFVILTQRL----TVQLQLYVSKSIASANQQAKRG 183


>AL021473-1|CAA16305.1|  570|Caenorhabditis elegans Hypothetical
           protein Y20C6A.2 protein.
          Length = 570

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 292 IAWAGRLDLNLARHCQSCHVGGSP 221
           + WA R  +N +R C    +GG P
Sbjct: 411 LEWARRCAMNFSRQCDEVDLGGEP 434


>U53336-7|AAA96179.1|  642|Caenorhabditis elegans Hypothetical
           protein K07C11.9 protein.
          Length = 642

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -1

Query: 141 IDAMLASIKDCIITVFCSFNLEESGVLVL 55
           IDAM+    D +++V  S  LE+SG+L L
Sbjct: 492 IDAMIEGNSDVLVSVQVSEMLEKSGILEL 520


>Z81536-11|CAB04363.2|  295|Caenorhabditis elegans Hypothetical
           protein F40D4.7 protein.
          Length = 295

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 13/50 (26%), Positives = 26/50 (52%)
 Frame = -1

Query: 159 LLSSVHIDAMLASIKDCIITVFCSFNLEESGVLVLVA*TTLISCEYGLCV 10
           L+ S+++  ++ SI  CI+ +F     ++   +VL      ++  YGL V
Sbjct: 10  LVLSINLFGVICSIFSCIMNIFILKKEKKKNEMVLFCFRYFLAAVYGLTV 59


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,244,019
Number of Sequences: 27780
Number of extensions: 199648
Number of successful extensions: 486
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 485
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 641068680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)