Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00019
(405 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g41880.1 68414.m04836 60S ribosomal protein L35a (RPL35aB) id... 78 2e-15
At3g55750.1 68416.m06194 60S ribosomal protein L35a (RPL35aD) ri... 78 3e-15
At1g74270.1 68414.m08601 60S ribosomal protein L35a (RPL35aC) si... 77 4e-15
At1g07070.1 68414.m00753 60S ribosomal protein L35a (RPL35aA) si... 77 4e-15
At1g50890.1 68414.m05722 expressed protein 29 1.6
At4g10800.1 68417.m01760 expressed protein predicted proteins, A... 27 6.3
At5g45160.1 68418.m05544 root hair defective 3 GTP-binding (RHD3... 26 8.3
At5g04560.1 68418.m00456 DEMETER protein (DME) identical to DEME... 26 8.3
At3g47920.1 68416.m05225 hypothetical protein similar to zinc fi... 26 8.3
At3g28010.1 68416.m03497 hypothetical protein contains Pfam prof... 26 8.3
At1g21660.1 68414.m02711 expressed protein low similarity to SP|... 26 8.3
At1g19715.1 68414.m02461 jacalin lectin family protein similar t... 26 8.3
>At1g41880.1 68414.m04836 60S ribosomal protein L35a (RPL35aB)
identical to GB:CAB81600 from [Arabidopsis thaliana]
Length = 111
Score = 78.2 bits (184), Expect = 2e-15
Identities = 39/94 (41%), Positives = 54/94 (57%)
Frame = +1
Query: 4 RLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGP 183
RLY + GYKR NQ+ NT+L+++EG + + +Y GK Y+Y+AK +
Sbjct: 10 RLYVRGTVLGYKRSKSNQYPNTSLIQIEGVNTQEEVNWYKGKRLAYIYKAKTKK------ 63
Query: 184 RGKKTKLRAIWGKVTRPHGNSGSVEPSSSLTSLP 285
+ R IWGKVTRPHGNSG V S ++LP
Sbjct: 64 --NGSHYRCIWGKVTRPHGNSGVVR-SKFTSNLP 94
Score = 40.7 bits (91), Expect = 4e-04
Identities = 19/42 (45%), Positives = 25/42 (59%)
Frame = +3
Query: 207 CYLGQGDPPTWQLWQCRAKFKSNLPAQAMGHRIRVMLYPSRI 332
C G+ P R+KF SNLP ++MG R+RV +YPS I
Sbjct: 70 CIWGKVTRPHGNSGVVRSKFTSNLPPKSMGARVRVFMYPSNI 111
>At3g55750.1 68416.m06194 60S ribosomal protein L35a (RPL35aD)
ribosomal protein L35a.e.c15, Saccharomyces cerevisiae,
PIR:S44069
Length = 111
Score = 77.8 bits (183), Expect = 3e-15
Identities = 39/94 (41%), Positives = 54/94 (57%)
Frame = +1
Query: 4 RLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGP 183
RLY + GYKR NQ+ NT+L+++EG + + +Y GK Y+Y+AK +
Sbjct: 10 RLYVRGTVLGYKRSKSNQYPNTSLVQIEGVNTQEEVNWYKGKRLAYIYKAKTKK------ 63
Query: 184 RGKKTKLRAIWGKVTRPHGNSGSVEPSSSLTSLP 285
+ R IWGKVTRPHGNSG V S ++LP
Sbjct: 64 --NGSHYRCIWGKVTRPHGNSGVVR-SKFTSNLP 94
Score = 40.7 bits (91), Expect = 4e-04
Identities = 19/42 (45%), Positives = 25/42 (59%)
Frame = +3
Query: 207 CYLGQGDPPTWQLWQCRAKFKSNLPAQAMGHRIRVMLYPSRI 332
C G+ P R+KF SNLP ++MG R+RV +YPS I
Sbjct: 70 CIWGKVTRPHGNSGVVRSKFTSNLPPKSMGARVRVFMYPSNI 111
>At1g74270.1 68414.m08601 60S ribosomal protein L35a (RPL35aC)
similar to ribosomal protein L33B GB:NP_014877 from
[Saccharomyces cerevisiae]
Length = 112
Score = 77.0 bits (181), Expect = 4e-15
Identities = 36/84 (42%), Positives = 49/84 (58%)
Frame = +1
Query: 4 RLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGP 183
RLY + GYKR NQ+ NT+L+++EG + + +Y GK Y+Y+AK +
Sbjct: 11 RLYVRGTILGYKRSKSNQYPNTSLVQIEGVNTQEEVNWYKGKRMAYIYKAKTKK------ 64
Query: 184 RGKKTKLRAIWGKVTRPHGNSGSV 255
+ R IWGKVTRPHGNSG V
Sbjct: 65 --NGSHYRCIWGKVTRPHGNSGVV 86
Score = 42.3 bits (95), Expect = 1e-04
Identities = 20/42 (47%), Positives = 25/42 (59%)
Frame = +3
Query: 207 CYLGQGDPPTWQLWQCRAKFKSNLPAQAMGHRIRVMLYPSRI 332
C G+ P RAKF SNLP ++MG R+RV +YPS I
Sbjct: 71 CIWGKVTRPHGNSGVVRAKFTSNLPPKSMGSRVRVFMYPSNI 112
>At1g07070.1 68414.m00753 60S ribosomal protein L35a (RPL35aA)
similar to ribosomal protein L35a GI:57118 from [Rattus
norvegicus]
Length = 112
Score = 77.0 bits (181), Expect = 4e-15
Identities = 37/84 (44%), Positives = 48/84 (57%)
Frame = +1
Query: 4 RLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGP 183
RLY + GYKR NQ+ NT+L++VEG + +Y GK Y+Y+AK +
Sbjct: 11 RLYVRGTILGYKRSKSNQYPNTSLVQVEGVNTTEEVSWYKGKRMAYIYKAKTKK------ 64
Query: 184 RGKKTKLRAIWGKVTRPHGNSGSV 255
+ R IWGKVTRPHGNSG V
Sbjct: 65 --NGSHYRCIWGKVTRPHGNSGVV 86
Score = 42.3 bits (95), Expect = 1e-04
Identities = 20/42 (47%), Positives = 25/42 (59%)
Frame = +3
Query: 207 CYLGQGDPPTWQLWQCRAKFKSNLPAQAMGHRIRVMLYPSRI 332
C G+ P RAKF SNLP ++MG R+RV +YPS I
Sbjct: 71 CIWGKVTRPHGNSGVVRAKFTSNLPPKSMGSRVRVFMYPSNI 112
>At1g50890.1 68414.m05722 expressed protein
Length = 821
Score = 28.7 bits (61), Expect = 1.6
Identities = 17/43 (39%), Positives = 25/43 (58%)
Frame = +3
Query: 156 EEDTNSRRSPWQKNQAACYLGQGDPPTWQLWQCRAKFKSNLPA 284
E+ NSRR+ W K+ A LG+G P +WQ +K ++ L A
Sbjct: 600 EQSGNSRRA-WDKSSVAIRLGEG-PSARSVWQA-SKDEATLEA 639
>At4g10800.1 68417.m01760 expressed protein predicted proteins,
Arabidopsis thaliana
Length = 283
Score = 26.6 bits (56), Expect = 6.3
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +1
Query: 187 GKKTKLRAIWGKVTRPHGNSGSVEPSSSLTSLPRLW 294
G K KL + GK+ G + PS S T L ++W
Sbjct: 149 GVKVKLVEVTGKILEAVGYGIVIVPSKSRTCLLKIW 184
>At5g45160.1 68418.m05544 root hair defective 3 GTP-binding (RHD3)
family protein contains Pfam profile: PF05879 root hair
defective 3 GTP-binding protein (RHD3) family
Length = 834
Score = 26.2 bits (55), Expect = 8.3
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = +1
Query: 136 VYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGS 252
++V R K +TPI R + ++ IW V +P + +
Sbjct: 167 LFVIRDKTKTPIELLERALREDIQKIWDSVRKPEAHKNT 205
>At5g04560.1 68418.m00456 DEMETER protein (DME) identical to DEMETER
protein [Arabidopsis thaliana] GI:21743571; contains
Pfam profile PF00730: HhH-GPD superfamily base excision
DNA repair protein
Length = 1729
Score = 26.2 bits (55), Expect = 8.3
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +1
Query: 61 ENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIP 174
+N L E +++N V Y G + Y +KKR P P
Sbjct: 659 QNLYLGDKEREQEQNAMVLYKGDGALVPYESKKRKPRP 696
>At3g47920.1 68416.m05225 hypothetical protein similar to zinc
finger protein [Arabidopsis thaliana] GI:976277
Length = 300
Score = 26.2 bits (55), Expect = 8.3
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = -3
Query: 193 FCHGDLRELVSSS*LCTHRRNACQHK-RLHHYG 98
F + LR + SS TH RN C ++ RL +YG
Sbjct: 125 FQYERLRRICSSCFRVTHHRNYCPYRPRLPNYG 157
>At3g28010.1 68416.m03497 hypothetical protein contains Pfam profile
PF03778: Protein of unknown function (DUF321)
Length = 261
Score = 26.2 bits (55), Expect = 8.3
Identities = 33/105 (31%), Positives = 41/105 (39%), Gaps = 3/105 (2%)
Frame = +1
Query: 43 GLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTKLRAIWGK 222
GLR EN + G F AGK VYV K R + G GK T LR W +
Sbjct: 89 GLRFWRENHGFTFLAGKSQVYRFKFLAGKLRVYVSAGKSRVNVFG---GKITGLR-FWRE 144
Query: 223 ---VTRPHGNSGSVEPSSSLTSLPRLWDTEYE*CCILPGSKNLLL 348
T G S + +TSL R W + L G +L+
Sbjct: 145 NHGFTFLVGKSQVLVFGGKITSL-RFWQENHR-FMFLAGKSQVLV 187
>At1g21660.1 68414.m02711 expressed protein low similarity to
SP|O14976 Cyclin G-associated kinase (EC 2.7.1.-) {Homo
sapiens}; supporting cDNA gi|20466222|gb|AY099577.1|
Length = 523
Score = 26.2 bits (55), Expect = 8.3
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -1
Query: 207 TQLGFFATGTSGNWCPLLSSVHI 139
T++ +ATG GN LLSS+HI
Sbjct: 430 TEIRRWATGKEGNMRALLSSLHI 452
>At1g19715.1 68414.m02461 jacalin lectin family protein similar to
agglutinin [Castanea crenata] GI:25528883; contains Pfam
profile PF01419: Jacalin-like lectin domain
Length = 595
Score = 26.2 bits (55), Expect = 8.3
Identities = 13/42 (30%), Positives = 18/42 (42%)
Frame = +1
Query: 58 HENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGP 183
H N+ ++E + N V A H V R + P P GP
Sbjct: 394 HNNSGTAQIENSPWANKLVLAANGHGEEVDRGVVKEPTPSGP 435
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,878,895
Number of Sequences: 28952
Number of extensions: 191102
Number of successful extensions: 566
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 595686720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -