Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00018
(772 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 167 2e-42
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 123 3e-29
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 121 1e-28
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 111 1e-25
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 108 1e-24
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 101 2e-22
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 99 8e-22
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 93 5e-20
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 89 9e-19
SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1 |Schiz... 85 8e-18
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 81 2e-16
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 81 2e-16
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 79 9e-16
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 78 2e-15
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p... 76 5e-15
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 74 2e-14
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 73 3e-14
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 70 3e-13
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 64 2e-11
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc... 62 9e-11
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po... 39 0.001
SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|ch... 35 0.011
SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces pombe... 34 0.020
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 33 0.060
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 32 0.079
SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|c... 32 0.10
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 31 0.14
SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomy... 31 0.14
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 31 0.14
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha... 31 0.18
SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr 3... 31 0.24
SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces pombe... 31 0.24
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 29 0.74
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 28 1.3
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex... 28 1.3
SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces pomb... 27 2.2
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch... 27 2.2
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni... 27 3.0
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 27 3.9
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S... 26 5.2
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 26 5.2
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|... 26 6.9
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 26 6.9
SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr 1|||Ma... 26 6.9
SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr 2... 25 9.1
SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomy... 25 9.1
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 167 bits (406), Expect = 2e-42
Identities = 76/84 (90%), Positives = 82/84 (97%)
Frame = +2
Query: 509 PDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAV 688
PDSTYEMVGGL+KQIKEIKEVIELPVKHPELF++LGI QPKG+LLYGPPGTGKTLLARAV
Sbjct: 140 PDSTYEMVGGLEKQIKEIKEVIELPVKHPELFESLGIPQPKGILLYGPPGTGKTLLARAV 199
Query: 689 AHHTECTFIRVSGSELVQKFIGEG 760
AHHT+C FIRVSGSELVQK+IGEG
Sbjct: 200 AHHTDCKFIRVSGSELVQKYIGEG 223
Score = 163 bits (397), Expect = 2e-41
Identities = 78/126 (61%), Positives = 96/126 (76%)
Frame = +3
Query: 132 EGFRPYYITKIEELQLIVAEKSQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVV 311
E YY KI++ +L + +K+QNLRRL+AQRN LNA+VR+LR GSYVGEV+
Sbjct: 14 ENIVQYYTQKIQDAELAILQKTQNLRRLEAQRNGLNARVRLLREEIQLLQEPGSYVGEVI 73
Query: 312 KPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSL 491
K M K KVLVKVHPEGK+VVD+ ++DI ++ N RVALRN+SY L KILPNKVDPLVSL
Sbjct: 74 KTMGKNKVLVKVHPEGKYVVDISPDIDIKEIKPNIRVALRNDSYQLIKILPNKVDPLVSL 133
Query: 492 MMVEKV 509
MMVEK+
Sbjct: 134 MMVEKI 139
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 123 bits (296), Expect = 3e-29
Identities = 52/86 (60%), Positives = 71/86 (82%)
Frame = +2
Query: 503 ESPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLAR 682
++P +Y +GGL+ QI+EIKE +ELP+ HPEL++ +GI PKGV+LYG PGTGKTLLA+
Sbjct: 184 KAPTESYADIGGLESQIQEIKEAVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAK 243
Query: 683 AVAHHTECTFIRVSGSELVQKFIGEG 760
AVA+ T TF+RV GSEL+QK++G+G
Sbjct: 244 AVANQTSATFLRVVGSELIQKYLGDG 269
Score = 29.9 bits (64), Expect = 0.42
Identities = 25/119 (21%), Positives = 54/119 (45%)
Frame = +3
Query: 159 KIEELQLIVAEKSQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVL 338
+I + L+ E QN RL+ Q + + G+ + E++ D ++
Sbjct: 74 RIHDHLLMEEEYVQNQERLKPQDERTQEERNRVDEIRGTPMSVGT-LEEIID--DDHAIV 130
Query: 339 VKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEKVRT 515
PE + V + VD + + C V L +++ ++ +L + DP++++M ++K T
Sbjct: 131 STAGPE--YYVSIMSFVDKDMLEPGCSVLLHHKAMSIVGLLLDDTDPMINVMKLDKAPT 187
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 121 bits (292), Expect = 1e-28
Identities = 56/86 (65%), Positives = 68/86 (79%)
Frame = +2
Query: 503 ESPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLAR 682
E PD TY VGG +QI+ ++EV+ELP+ PE F LGI PKG++LYGPPGTGKTL AR
Sbjct: 172 EKPDVTYGDVGGCKEQIERLREVVELPLLSPERFVKLGIDPPKGIMLYGPPGTGKTLCAR 231
Query: 683 AVAHHTECTFIRVSGSELVQKFIGEG 760
AVA+ T+ TFIRV GSELVQK++GEG
Sbjct: 232 AVANRTDATFIRVIGSELVQKYVGEG 257
Score = 42.3 bits (95), Expect = 7e-05
Identities = 20/62 (32%), Positives = 31/62 (50%)
Frame = +3
Query: 321 DKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMV 500
+K ++ + KFVV L + V D+ RV Y + LP K+DP V++M V
Sbjct: 111 EKNAYVINLKQIAKFVVSLGERVSPTDIEEGMRVGCDRNKYAIQLPLPPKIDPSVTMMQV 170
Query: 501 EK 506
E+
Sbjct: 171 EE 172
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 111 bits (266), Expect = 1e-25
Identities = 50/86 (58%), Positives = 65/86 (75%)
Frame = +2
Query: 503 ESPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLAR 682
E PD +Y VGGLD Q +E++E +ELP+ +L+ +GI P+GVLLYGPPGTGKT+L +
Sbjct: 127 ERPDVSYADVGGLDVQKQEVREAVELPLTQGDLYRQIGIDPPRGVLLYGPPGTGKTMLVK 186
Query: 683 AVAHHTECTFIRVSGSELVQKFIGEG 760
AVA+ T FIRV GSE VQK++GEG
Sbjct: 187 AVANSTAANFIRVVGSEFVQKYLGEG 212
Score = 29.9 bits (64), Expect = 0.42
Identities = 16/66 (24%), Positives = 33/66 (50%)
Frame = +3
Query: 297 VGEVVKPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVD 476
+G+ ++ +D+ +V +VV + +D + + VAL+ S L ILP + D
Sbjct: 58 IGQFLEAIDQNTAIVGSTTGSNYVVRILSTLDRELLKPSASVALQRHSNALVDILPPEAD 117
Query: 477 PLVSLM 494
+S++
Sbjct: 118 SSISML 123
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 108 bits (259), Expect = 1e-24
Identities = 53/86 (61%), Positives = 67/86 (77%), Gaps = 1/86 (1%)
Frame = +2
Query: 503 ESP-DSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLA 679
E P D ++ VGGL++QI+E++EVIELP+K+PELF +GI PKGVLLYGPPGTGKTLLA
Sbjct: 124 EDPGDISFAGVGGLNEQIRELREVIELPLKNPELFLRVGIKPPKGVLLYGPPGTGKTLLA 183
Query: 680 RAVAHHTECTFIRVSGSELVQKFIGE 757
RAVA F++V S +V K+IGE
Sbjct: 184 RAVAASLGVNFLKVVSSAIVDKYIGE 209
Score = 55.6 bits (128), Expect = 7e-09
Identities = 27/72 (37%), Positives = 43/72 (59%)
Frame = +3
Query: 288 GSYVGEVVKPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPN 467
G +GEV+K +D ++ +VK ++VV NVD + + RV+L + T+ +ILP
Sbjct: 53 GQIIGEVLKQLDSERFIVKASSGPRYVVGCRNNVDQSHLVQGVRVSLDMTTLTIMRILPR 112
Query: 468 KVDPLVSLMMVE 503
+VDPLV M +E
Sbjct: 113 EVDPLVYNMSIE 124
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 101 bits (241), Expect = 2e-22
Identities = 40/79 (50%), Positives = 62/79 (78%)
Frame = +2
Query: 521 YEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT 700
Y+ +GG +Q+ +I+E++ELP++HP+LF ++GI P+G+L+YGPPGTGKTL+ARAVA+ T
Sbjct: 223 YDDIGGCRRQMAQIRELVELPLRHPQLFKSIGIKPPRGILMYGPPGTGKTLMARAVANET 282
Query: 701 ECTFIRVSGSELVQKFIGE 757
F ++G E++ K GE
Sbjct: 283 GAFFFLINGPEIMSKMAGE 301
Score = 87.4 bits (207), Expect = 2e-18
Identities = 38/85 (44%), Positives = 57/85 (67%)
Frame = +2
Query: 503 ESPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLAR 682
E P+ +E +GGL++ +E++E +++PV + E F G+ KGVL +GPPGTGKTLLA+
Sbjct: 490 EVPNVRWEDIGGLEEVKRELRETVQMPVMYAEKFLRFGVTPSKGVLFFGPPGTGKTLLAK 549
Query: 683 AVAHHTECTFIRVSGSELVQKFIGE 757
A+A+ FI V G EL+ + GE
Sbjct: 550 AIANECSANFISVKGPELLSMWFGE 574
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 98.7 bits (235), Expect = 8e-22
Identities = 44/86 (51%), Positives = 60/86 (69%)
Frame = +2
Query: 503 ESPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLAR 682
E P Y +GGL KQI+E+ E I LP++ + F LG+ PKG L++GPPGTGKTLLAR
Sbjct: 178 EKPTERYSDIGGLSKQIEELFEAIVLPMQQADKFRKLGVKPPKGCLMFGPPGTGKTLLAR 237
Query: 683 AVAHHTECTFIRVSGSELVQKFIGEG 760
A A + TF++++ +LVQ FIG+G
Sbjct: 238 ACAAQSNATFLKLAAPQLVQMFIGDG 263
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 92.7 bits (220), Expect = 5e-20
Identities = 44/103 (42%), Positives = 61/103 (59%)
Frame = +2
Query: 449 TQNTTQQSRSSCVAHDGRESPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP 628
TQ+ Q DG S T+ +GGL QI +I++++ELP ++PELF I P
Sbjct: 255 TQSAYNQGSEETQNFDGPPSA-VTFSSIGGLQAQIAQIRDIVELPFQNPELFKFFNIMPP 313
Query: 629 KGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGE 757
+GVLLYGPPGTGKT++ RAVA + G +V K++GE
Sbjct: 314 RGVLLYGPPGTGKTMVMRAVAAEANAQVFTIDGPSVVGKYLGE 356
Score = 91.5 bits (217), Expect = 1e-19
Identities = 43/95 (45%), Positives = 59/95 (62%)
Frame = +2
Query: 473 RSSCVAHDGRESPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGP 652
R S + ESP+ + +GG ++ +++KE +E P+ H E F LG+ PKGVLLYGP
Sbjct: 531 RQSAMREFMMESPNVHWSDIGGQEEVKQKLKESVEWPLTHGETFSRLGVRPPKGVLLYGP 590
Query: 653 PGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGE 757
PG KT+ A+A+A T FI V G EL KF+GE
Sbjct: 591 PGCSKTITAKAIATETGLNFIAVKGPELFDKFVGE 625
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 88.6 bits (210), Expect = 9e-19
Identities = 47/121 (38%), Positives = 67/121 (55%), Gaps = 1/121 (0%)
Frame = +2
Query: 407 GQLSCRSSQRKLYLTQNTTQQSRSSCVAHDGRESP-DSTYEMVGGLDKQIKEIKEVIELP 583
GQ S S ++ T R A+ RE P D + +GGLD I E+ E++ +P
Sbjct: 136 GQESITGSAKRKDRRSKTNGSKRQKAEAN--REPPSDISLSDIGGLDDCINELLELVAMP 193
Query: 584 VKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGR 763
+KHPE++ GI P+GVLL+GPPG GKT+LA A+A+ FI +S +V GE
Sbjct: 194 IKHPEVYQYTGIHPPRGVLLHGPPGCGKTMLANALANELGVPFISISAPSIVSGMSGESE 253
Query: 764 E 766
+
Sbjct: 254 K 254
Score = 86.6 bits (205), Expect = 3e-18
Identities = 38/83 (45%), Positives = 57/83 (68%)
Frame = +2
Query: 509 PDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAV 688
P ++ +G L E++ I P+K PEL+ ++GI+ P GVLL+GPPG GKTLLA+AV
Sbjct: 487 PGVSWNNIGALKSIRVELQMAIVQPIKRPELYQSVGISAPTGVLLWGPPGCGKTLLAKAV 546
Query: 689 AHHTECTFIRVSGSELVQKFIGE 757
A+ ++ FI + G EL+ K++GE
Sbjct: 547 ANESKANFISIRGPELLNKYVGE 569
>SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 355
Score = 85.4 bits (202), Expect = 8e-18
Identities = 37/87 (42%), Positives = 61/87 (70%), Gaps = 2/87 (2%)
Frame = +2
Query: 512 DSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALG--IAQPKGVLLYGPPGTGKTLLARA 685
D +++ +GG+D+ + ++ + + P+K+PE+FD G ++ PKG+LLYGPPG GKT+LA+A
Sbjct: 85 DVSFDDIGGMDEHVNQLLQDVLFPLKYPEVFDTHGGLLSCPKGLLLYGPPGCGKTMLAKA 144
Query: 686 VAHHTECTFIRVSGSELVQKFIGEGRE 766
+A ++ TFI VS L K+ GE +
Sbjct: 145 LAKQSQATFINVSVGLLTDKWFGESNK 171
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 81.0 bits (191), Expect = 2e-16
Identities = 36/85 (42%), Positives = 58/85 (68%), Gaps = 5/85 (5%)
Frame = +2
Query: 518 TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVA-- 691
++E VGGLD I ++KE++ LP+ +PE+F + P+GVL +GPPGTGKTL+ARA+A
Sbjct: 264 SFESVGGLDNYINQLKEMVMLPLLYPEIFQRFNMQPPRGVLFHGPPGTGKTLMARALAAA 323
Query: 692 ---HHTECTFIRVSGSELVQKFIGE 757
+ + +F G++ + K++GE
Sbjct: 324 CSSENKKVSFYMRKGADCLSKWVGE 348
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 81.0 bits (191), Expect = 2e-16
Identities = 36/83 (43%), Positives = 55/83 (66%)
Frame = +2
Query: 509 PDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAV 688
P ++ +GGL++ +++ ++LP++ PELF G+ GVLLYGPPGTGKTLLA+AV
Sbjct: 650 PKVNWDDIGGLEEAKTVLRDTLQLPLQFPELFSQ-GLKPRSGVLLYGPPGTGKTLLAKAV 708
Query: 689 AHHTECTFIRVSGSELVQKFIGE 757
A F+ + G EL+ ++GE
Sbjct: 709 ATELSLEFVSIKGPELLNMYVGE 731
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 78.6 bits (185), Expect = 9e-16
Identities = 38/85 (44%), Positives = 55/85 (64%)
Frame = +2
Query: 503 ESPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLAR 682
E P+ ++ + GL+ + +KE + LP+K P+LF G G+LLYGPPGTGK+ LA+
Sbjct: 122 EKPNVRWDDIAGLENAKEALKETVLLPIKLPQLFSH-GRKPWSGILLYGPPGTGKSYLAK 180
Query: 683 AVAHHTECTFIRVSGSELVQKFIGE 757
AVA TF +S S+LV K++GE
Sbjct: 181 AVATEAGSTFFSISSSDLVSKWMGE 205
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 77.8 bits (183), Expect = 2e-15
Identities = 42/120 (35%), Positives = 66/120 (55%), Gaps = 2/120 (1%)
Frame = +2
Query: 413 LSCRSSQRKLYLTQNTTQQSRSSCVAHDGRESPDSTY-EMVGGLDKQIKEIKEVIELPVK 589
+S ++Q+ L Q T + ++ + + Y + GLD +KE + P
Sbjct: 341 ISASTTQQTEPLQQTTPSSDFEYAIMNEIISNHEPVYWSDIAGLDDAKNSLKEAVIYPFL 400
Query: 590 HPELFDALGIAQP-KGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGRE 766
PELF G+ +P +G+LL+GPPGTGKT+LARAVA + TF +S S L K++G+ +
Sbjct: 401 RPELFQ--GLREPVQGMLLFGPPGTGKTMLARAVATEAKATFFSISASSLTSKYLGDSEK 458
>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 76.2 bits (179), Expect = 5e-15
Identities = 35/77 (45%), Positives = 52/77 (67%)
Frame = +2
Query: 530 VGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT 709
V G+D+ +EI E ++ +K+P+ ++ LG P+G +L GPPGTGKTLLA+A A
Sbjct: 298 VAGVDEAKEEIMEFVKF-LKNPKFYERLGAKIPRGAILSGPPGTGKTLLAKATAGEANVP 356
Query: 710 FIRVSGSELVQKFIGEG 760
F+ VSGSE ++ F+G G
Sbjct: 357 FLSVSGSEFLEMFVGVG 373
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 74.1 bits (174), Expect = 2e-14
Identities = 38/91 (41%), Positives = 60/91 (65%), Gaps = 5/91 (5%)
Frame = +2
Query: 500 RESPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLA 679
RE+ D + +GGL+ I ++KE++ LP+ +PE+F L I P+GVL +GPPGTGKTL+A
Sbjct: 366 RENLD--FNSIGGLEDIILQLKEMVMLPLLYPEVFLHLHITPPRGVLFHGPPGTGKTLMA 423
Query: 680 RAVA-----HHTECTFIRVSGSELVQKFIGE 757
R +A + + +F GS+ + K++GE
Sbjct: 424 RVLAANCSTKNQKISFFLRKGSDCLSKWVGE 454
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 73.3 bits (172), Expect = 3e-14
Identities = 35/83 (42%), Positives = 52/83 (62%), Gaps = 1/83 (1%)
Frame = +2
Query: 521 YEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPPGTGKTLLARAVAHH 697
++ + GL+ +KE + P P+LF G+ +P +G+LL+GPPGTGKT+LARAVA
Sbjct: 458 WDDISGLEFAKHSLKEAVVYPFLRPDLFQ--GLREPARGMLLFGPPGTGKTMLARAVATE 515
Query: 698 TECTFIRVSGSELVQKFIGEGRE 766
+ F +S S L KF+GE +
Sbjct: 516 SRSVFFSISASSLTSKFLGESEK 538
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 70.1 bits (164), Expect = 3e-13
Identities = 34/77 (44%), Positives = 51/77 (66%)
Frame = +2
Query: 530 VGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT 709
V G+D+ +E++E+++ ++ P F LG P+GVLL GPPGTGKT+LARAVA
Sbjct: 269 VQGVDEAKEELEEIVDF-LRDPTHFTRLGGKLPRGVLLTGPPGTGKTMLARAVAGEANVP 327
Query: 710 FIRVSGSELVQKFIGEG 760
F +SGS+ + ++G G
Sbjct: 328 FFFMSGSQFDEMYVGVG 344
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 64.1 bits (149), Expect = 2e-11
Identities = 27/79 (34%), Positives = 48/79 (60%)
Frame = +2
Query: 530 VGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT 709
+ G+ + + ++++IE PVK+ ++ + P G+LL+G PG GKT LA A++
Sbjct: 608 IAGMQEAKEAVRDIIESPVKYSLIYKQCRLRLPTGILLFGYPGCGKTYLASAISSTFPVQ 667
Query: 710 FIRVSGSELVQKFIGEGRE 766
FI + G EL+ K+IG+ +
Sbjct: 668 FISIKGPELLDKYIGKSEQ 686
>SPAC1834.11c |sec18||secretory pathway protein Sec18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 792
Score = 62.1 bits (144), Expect = 9e-11
Identities = 31/81 (38%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Frame = +2
Query: 530 VGGLDKQIKEI-KEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTEC 706
+GGLD + I + + P + + LGI KG+LLYGPPGTGKTL+AR +
Sbjct: 271 IGGLDSEFSAIFRRAFASRLFPPGMVEKLGINHVKGILLYGPPGTGKTLIARQIGKMLNA 330
Query: 707 TFIR-VSGSELVQKFIGEGRE 766
+ V+G E++ K++G+ E
Sbjct: 331 REPKIVNGPEILNKYVGQSEE 351
Score = 29.9 bits (64), Expect = 0.42
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +2
Query: 635 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSE 733
VLL GP +GKT LA +A +E F+++ +E
Sbjct: 588 VLLSGPIASGKTALAATIALGSEFPFVKLVSAE 620
>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 449
Score = 38.7 bits (86), Expect = 0.001
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Frame = +2
Query: 539 LDKQIKE-IKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVA 691
L+ +K+ I + + +++ + +D GI +G LLYGPPG+GKT A+A
Sbjct: 212 LESNVKKMITDDVHDFLRNSQWYDTRGIPYRRGYLLYGPPGSGKTSFLYALA 263
>SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 474
Score = 35.1 bits (77), Expect = 0.011
Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = +2
Query: 533 GGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPP-GTGKTLLARAVAHHTECT 709
G L QI+E+ I P+K + DA + YG P G L V +HTE
Sbjct: 266 GSLRTQIEELAASINFPLKKLYVIDASRRSTHSNAFFYGLPWNKGIVLFDTLVKNHTEPE 325
Query: 710 FIRVSGSEL 736
I + G EL
Sbjct: 326 LIAILGHEL 334
>SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 504
Score = 34.3 bits (75), Expect = 0.020
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +2
Query: 635 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGS 730
++L+G GTGKT LAR +A T+ FI +S +
Sbjct: 123 MILWGSAGTGKTTLARLIAVTTKSRFIEISAT 154
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 32.7 bits (71), Expect = 0.060
Identities = 19/62 (30%), Positives = 31/62 (50%)
Frame = +2
Query: 539 LDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIR 718
LD+ +K+V + ++ + G Q K + L GPPG GKT + +++A F R
Sbjct: 542 LDRDHYGLKDVKDRVLELVAVGKLRGTMQGKIMCLVGPPGVGKTSVGKSIASALNREFFR 601
Query: 719 VS 724
S
Sbjct: 602 FS 603
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 32.3 bits (70), Expect = 0.079
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Frame = +2
Query: 623 QPKGVLLY-GPPGTGKTLLARAVA---HHTECTFIRVSGSELVQK 745
QP L+ GP GTGKTLL +A+A E IR+ SE ++K
Sbjct: 612 QPIASFLFCGPSGTGKTLLTKALASFMFDDENAMIRIDMSEYMEK 656
>SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 465
Score = 31.9 bits (69), Expect = 0.10
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Frame = +2
Query: 629 KGVLLYGPPGTGKTLLARAVAHH--TECTFIRVSGSEL 736
+ +L+ GPP TGKT +A +A ++ F+ +S SE+
Sbjct: 66 RAILMAGPPSTGKTAIAMGMAQSLGSDTPFVTLSASEV 103
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 31.5 bits (68), Expect = 0.14
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +2
Query: 629 KGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSE 733
K +LL G PG GKT L A+A T +R++ S+
Sbjct: 1560 KPILLEGSPGVGKTSLITALARETGHQLVRINLSD 1594
Score = 30.3 bits (65), Expect = 0.32
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = +2
Query: 635 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSEL--VQKFIG 754
+L+ GP +GKT + VA T F+R++ E +Q++IG
Sbjct: 897 ILIQGPTSSGKTSMIEYVAKKTGHKFVRINNHEHTDLQEYIG 938
Score = 25.4 bits (53), Expect = 9.1
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +2
Query: 617 IAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSE 733
+ Q + +LL GP G GK L +A IR+ S+
Sbjct: 149 LVQKRPILLAGPEGIGKKFLITQIAAKLGQQIIRIHLSD 187
>SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 454
Score = 31.5 bits (68), Expect = 0.14
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +2
Query: 512 DSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGI-AQPKGVLLYGPPGTGKTLLARAV 688
DS G + I +K++ K P L +L + PKG+ LYG G GKT L
Sbjct: 80 DSMPAEKGSILSWISPLKKMFSRK-KSPTLTSSLPVPGMPKGIYLYGDVGCGKTALMDLF 138
Query: 689 AHH 697
H+
Sbjct: 139 YHN 141
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 31.5 bits (68), Expect = 0.14
Identities = 15/26 (57%), Positives = 16/26 (61%)
Frame = +2
Query: 614 GIAQPKGVLLYGPPGTGKTLLARAVA 691
G+ K VLL GPPG GKT A VA
Sbjct: 405 GLGLYKAVLLSGPPGIGKTTAAHLVA 430
>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
Upf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 31.1 bits (67), Expect = 0.18
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +2
Query: 638 LLYGPPGTGKTLLARAVAHH 697
L+ GPPGTGKT+ + +V +H
Sbjct: 411 LIQGPPGTGKTVTSASVVYH 430
>SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 175
Score = 30.7 bits (66), Expect = 0.24
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +2
Query: 635 VLLYGPPGTGKTLLARAVAHHTE 703
+++ G PGTGKT LA VA TE
Sbjct: 11 IIICGTPGTGKTTLAEQVAETTE 33
>SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 456
Score = 30.7 bits (66), Expect = 0.24
Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +2
Query: 629 KGVLLYGPPGTGKTLLARAVAHH--TECTFIRVSGSEL 736
KGVL G GTGKT LA A+A + F + GSE+
Sbjct: 65 KGVLFAGGAGTGKTALALAIAQELGPKVPFCPMVGSEV 102
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 29.1 bits (62), Expect = 0.74
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +2
Query: 626 PKGVLLYGPPGTGK-TLLARAVAHHTECTFIRVSG 727
P V + GPPGTGK TL+ V +++ T +++G
Sbjct: 74 PVIVAVMGPPGTGKSTLIKSLVRRYSKYTISQITG 108
>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 28.3 bits (60), Expect = 1.3
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +2
Query: 506 SPDSTYEMVGGLDKQIKEIKEV 571
SP +YE++ GLDKQ + K+V
Sbjct: 17 SPKESYELLHGLDKQYQSTKDV 38
>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 28.3 bits (60), Expect = 1.3
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +2
Query: 635 VLLYGPPGTGKTLLARAVA 691
+L YGPPGTGKT A A
Sbjct: 59 MLFYGPPGTGKTSTILACA 77
>SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 394
Score = 27.5 bits (58), Expect = 2.2
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = +2
Query: 419 CRSSQRKLYLTQ-NTTQQSRSSCVAHDGRESPDSTYEMVGGLDKQIKEIKEVIEL 580
CR +R+ +++ N+T+ + HD + P S YE +G +K++KE +E+
Sbjct: 331 CRQRKRRTTISRDNSTRSTWGIGSEHDMQCLPPS-YETMGPCEKEMKEETNEVEI 384
>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 803
Score = 27.5 bits (58), Expect = 2.2
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = +2
Query: 638 LLYGPPGTGKTLLARAVAH---HTECTFIRVSGSELVQK 745
L GP G GKT L +A+A T+ IR SE +K
Sbjct: 536 LFLGPTGVGKTALTKALAEFLFDTDKAMIRFDMSEFQEK 574
>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 960
Score = 27.1 bits (57), Expect = 3.0
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +2
Query: 635 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSE 733
++L G G GKT LA +AH + ++ S+
Sbjct: 419 MMLTGLAGAGKTTLAHVIAHQAGYKVLEINASD 451
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 26.6 bits (56), Expect = 3.9
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -1
Query: 403 TSLISTFLSKSTTNLPSG*TFTRTFFLSIGLTT 305
TS+IS+ S S T++PS + +FF + G T+
Sbjct: 822 TSIISSIASSSYTSIPSISSIASSFFDASGFTS 854
>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 660
Score = 26.2 bits (55), Expect = 5.2
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = +2
Query: 638 LLYGPPGTGKT 670
L++GPPGTGKT
Sbjct: 229 LIHGPPGTGKT 239
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 26.2 bits (55), Expect = 5.2
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -2
Query: 768 HSLPSPINFCTNSDPETRMKVHSVW*ATARANNVFP 661
H PSPI ++D +TR S W + A A N FP
Sbjct: 242 HQSPSPIPNSNDNDSQTR---RSSWSSIASAFNDFP 274
>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
2|||Manual
Length = 577
Score = 25.8 bits (54), Expect = 6.9
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 647 GPPGTGKTLLARAVAHHTECTFIRVS 724
G PGTGKT+L V H + +V+
Sbjct: 199 GAPGTGKTVLLHNVLDHVVSDYPKVN 224
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 25.8 bits (54), Expect = 6.9
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +3
Query: 165 EELQLIVAEKSQNLRRLQAQ 224
EEL+LI K ++ RRLQAQ
Sbjct: 275 EELELIAERKRESGRRLQAQ 294
>SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 193
Score = 25.8 bits (54), Expect = 6.9
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +2
Query: 638 LLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQK 745
++ GP G+GKT +A+AV+ + F + G +L K
Sbjct: 18 VVIGPAGSGKTTMAKAVSE--KLGFEYIEGDDLHPK 51
>SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 202
Score = 25.4 bits (53), Expect = 9.1
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = +2
Query: 629 KGVLLYGPPGTGK-TLLARAVAHH 697
K V+++GP G GK TLL R + H
Sbjct: 19 KPVVVFGPSGVGKSTLLKRLLKDH 42
>SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 537
Score = 25.4 bits (53), Expect = 9.1
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = +3
Query: 429 RNESYTLHKILPNKVDPLVSLMMVEKVRTLLTKW 530
++E YT PNK +S + E++ L K+
Sbjct: 254 KDEKYTFELTFPNKPAETISTLQAEEIVALTAKY 287
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,020,854
Number of Sequences: 5004
Number of extensions: 59558
Number of successful extensions: 251
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 246
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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