Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00018
(772 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit, puta... 170 1e-42
At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a) 170 1e-42
At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1... 124 5e-29
At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit, puta... 122 2e-28
At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2... 120 8e-28
At2g20140.1 68415.m02353 26S protease regulatory complex subunit... 120 8e-28
At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3... 119 2e-27
At1g09100.1 68414.m01016 26S protease regulatory subunit 6A, put... 114 7e-26
At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5... 113 9e-26
At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4... 105 3e-23
At1g45000.1 68414.m05158 26S proteasome regulatory complex subun... 105 3e-23
At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)... 104 7e-23
At5g03340.1 68418.m00286 cell division cycle protein 48, putativ... 103 2e-22
At3g53230.1 68416.m05865 cell division cycle protein 48, putativ... 103 2e-22
At5g15250.1 68418.m01786 FtsH protease, putative similar to FtsH... 86 2e-17
At4g24860.1 68417.m03559 AAA-type ATPase family protein contains... 86 3e-17
At2g30950.1 68415.m03775 FtsH protease (VAR2) identical to zinc ... 85 5e-17
At1g06430.1 68414.m00680 FtsH protease, putative similar to zinc... 85 5e-17
At4g02480.1 68417.m00335 AAA-type ATPase family protein contains... 84 1e-16
At3g56690.1 68416.m06306 calmodulin-binding protein identical to... 84 1e-16
At1g03000.1 68414.m00271 AAA-type ATPase family protein contains... 83 3e-16
At3g01610.1 68416.m00092 AAA-type ATPase family protein contains... 82 5e-16
At2g34560.2 68415.m04246 katanin, putative similar to katanin p6... 81 8e-16
At2g34560.1 68415.m04245 katanin, putative similar to katanin p6... 81 8e-16
At5g53540.1 68418.m06653 MSP1 protein, putative / intramitochond... 81 1e-15
At2g03670.1 68415.m00326 AAA-type ATPase family protein contains... 80 2e-15
At5g58870.1 68418.m07376 FtsH protease, putative contains simila... 79 2e-15
At1g02890.1 68414.m00256 AAA-type ATPase family protein contains... 79 2e-15
At4g23940.1 68417.m03443 FtsH protease, putative contains simila... 79 3e-15
At1g50140.1 68414.m05623 AAA-type ATPase family protein contains... 79 4e-15
At1g64110.2 68414.m07264 AAA-type ATPase family protein contains... 78 6e-15
At1g64110.1 68414.m07263 AAA-type ATPase family protein contains... 78 6e-15
At4g28000.1 68417.m04016 AAA-type ATPase family protein contains... 78 7e-15
At3g47060.1 68416.m05110 FtsH protease, putative contains simila... 78 7e-15
At3g19740.1 68416.m02499 AAA-type ATPase family protein contains... 78 7e-15
At2g27600.1 68415.m03346 AAA-type ATPase family protein / vacuol... 78 7e-15
At5g42270.1 68418.m05145 FtsH protease, putative similar to FtsH... 77 1e-14
At4g27680.1 68417.m03980 MSP1 protein, putative / intramitochond... 77 2e-14
At1g50250.1 68414.m05634 cell division protein ftsH homolog 1, c... 76 3e-14
At2g45500.1 68415.m05659 AAA-type ATPase family protein similar ... 75 5e-14
At1g05910.1 68414.m00620 cell division cycle protein 48-related ... 75 5e-14
At2g29080.1 68415.m03535 FtsH protease, putative similar to AAA-... 75 7e-14
At3g27120.1 68416.m03393 spastin ATPase, putative similar to SWI... 73 3e-13
At2g26140.1 68415.m03137 FtsH protease, putative contains simila... 73 3e-13
At1g80350.1 68414.m09406 katanin 1 (KTN1) identical to katanin 1... 72 4e-13
At1g07510.1 68414.m00804 FtsH protease, putative similar to AAA-... 72 5e-13
At5g53170.1 68418.m06610 FtsH protease, putative similar to ATP-... 71 6e-13
At5g64580.1 68418.m08116 AAA-type ATPase family protein similar ... 71 1e-12
At3g02450.1 68416.m00232 cell division protein ftsH, putative si... 71 1e-12
At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1) id... 69 5e-12
At3g16290.1 68416.m02056 FtsH protease, putative contains simila... 66 2e-11
At3g15120.1 68416.m01913 AAA-type ATPase family protein contains... 65 4e-11
At1g62130.1 68414.m07010 AAA-type ATPase family protein contains... 60 2e-09
At4g04910.1 68417.m00714 AAA-type ATPase family protein similar ... 57 1e-08
At4g04180.1 68417.m00593 AAA-type ATPase family protein contains... 53 2e-07
At3g04340.1 68416.m00459 FtsH protease family protein similar to... 50 2e-06
At3g28580.1 68416.m03568 AAA-type ATPase family protein contains... 48 7e-06
At5g17760.2 68418.m02083 AAA-type ATPase family protein contains... 48 9e-06
At5g17760.1 68418.m02082 AAA-type ATPase family protein contains... 48 9e-06
At3g50930.1 68416.m05576 AAA-type ATPase family protein contains... 47 1e-05
At1g79560.1 68414.m09275 FtsH protease, putative contains simila... 47 2e-05
At3g50940.1 68416.m05577 AAA-type ATPase family protein contains... 46 4e-05
At2g18193.1 68415.m02117 AAA-type ATPase family protein contains... 45 5e-05
At2g18190.1 68415.m02116 AAA-type ATPase family protein contains... 45 6e-05
At1g43910.1 68414.m05066 AAA-type ATPase family protein contains... 44 1e-04
At5g17740.1 68418.m02080 AAA-type ATPase family protein h-bcs1, ... 42 3e-04
At3g28600.1 68416.m03570 AAA-type ATPase family protein contains... 42 3e-04
At5g40010.1 68418.m04852 AAA-type ATPase family protein contains... 42 5e-04
At5g17730.1 68418.m02079 AAA-type ATPase family protein contains... 42 5e-04
At4g30250.1 68417.m04301 AAA-type ATPase family protein contains... 42 6e-04
At3g28570.1 68416.m03567 AAA-type ATPase family protein contains... 42 6e-04
At5g17750.1 68418.m02081 AAA-type ATPase family protein contains... 41 0.001
At3g28540.1 68416.m03564 AAA-type ATPase family protein contains... 41 0.001
At3g28520.1 68416.m03562 AAA-type ATPase family protein contains... 41 0.001
At4g05380.1 68417.m00820 AAA-type ATPase family protein contains... 40 0.001
At3g28510.1 68416.m03561 AAA-type ATPase family protein contains... 40 0.002
At3g28610.1 68416.m03571 AAA-type ATPase family protein contains... 39 0.004
At1g21690.1 68414.m02714 replication factor C 37 kDa, putative S... 39 0.004
At5g57480.1 68418.m07183 AAA-type ATPase family protein contains... 38 0.006
At5g40000.1 68418.m04851 AAA-type ATPase family protein BCS1 nuc... 38 0.006
At5g16930.1 68418.m01984 AAA-type ATPase family protein contains... 38 0.006
At4g36580.1 68417.m05193 AAA-type ATPase family protein contains... 38 0.006
At2g18330.1 68415.m02136 AAA-type ATPase family protein contains... 38 0.006
At1g08270.2 68414.m00912 expressed protein low similarity to SP|... 38 0.006
At4g25835.1 68417.m03716 AAA-type ATPase family protein contains... 38 0.007
At5g53350.1 68418.m06630 ATP-dependent Clp protease ATP-binding ... 38 0.010
At3g03060.1 68416.m00302 AAA-type ATPase family protein contains... 38 0.010
At5g49840.1 68418.m06172 ATP-dependent Clp protease ATP-binding ... 36 0.039
At3g05780.1 68416.m00649 Lon protease, putative similar to Lon p... 36 0.039
At2g46620.1 68415.m05815 AAA-type ATPase family protein contains... 36 0.039
At1g33360.1 68414.m04129 ATP-dependent Clp protease ATP-binding ... 36 0.039
At1g21690.2 68414.m02715 replication factor C 37 kDa, putative S... 36 0.039
At4g24710.1 68417.m03536 AAA-type ATPase family protein similar ... 35 0.052
At5g26860.1 68418.m03204 Lon protease homolog 2, mitochondrial a... 35 0.068
At3g30842.1 68416.m03968 ABC transporter protein, putative simil... 34 0.090
At2g02480.1 68415.m00187 DNA polymerase-related weak similarity ... 34 0.090
At1g67120.1 68414.m07636 midasin-related similar to Midasin (MID... 34 0.090
At4g14670.1 68417.m02255 heat shock protein 101, putative / HSP1... 34 0.12
At5g22330.1 68418.m02605 TATA box-binding protein-interacting pr... 33 0.16
At3g51570.1 68416.m05648 disease resistance protein (TIR-NBS-LRR... 33 0.21
At2g36380.1 68415.m04464 ABC transporter family protein related ... 33 0.28
At3g05790.1 68416.m00650 Lon protease, putative similar to Lon p... 32 0.36
At2g37280.1 68415.m04573 ABC transporter family protein similar ... 32 0.36
At1g08270.1 68414.m00913 expressed protein low similarity to SP|... 32 0.36
At5g67630.1 68418.m08527 DNA helicase, putative similar to RuvB-... 32 0.48
At5g47010.1 68418.m05794 RNA helicase, putative similar to type ... 32 0.48
At1g77470.1 68414.m09021 replication factor C 36 kDA, putative s... 32 0.48
At1g66950.1 68414.m07612 ABC transporter family protein similar ... 32 0.48
At1g15520.1 68414.m01867 ABC transporter family protein similar ... 32 0.48
At2g25140.1 68415.m03007 heat shock protein 100, putative / HSP1... 31 0.64
At5g15450.1 68418.m01808 heat shock protein 100, putative / HSP1... 31 0.84
At1g14460.1 68414.m01715 DNA polymerase-related weak similarity ... 31 0.84
At1g04730.1 68414.m00469 AAA-type ATPase family protein contains... 31 0.84
At2g16870.1 68415.m01941 disease resistance protein (TIR-NBS-LRR... 31 1.1
At1g74310.1 68414.m08605 heat shock protein 101 (HSP101) identic... 31 1.1
At4g15215.1 68417.m02332 ABC transporter family protein similar ... 30 1.5
At3g49830.1 68416.m05448 DNA helicase-related similar to DNA hel... 30 1.5
At1g63750.1 68414.m07214 disease resistance protein (TIR-NBS-LRR... 30 1.5
At5g46470.1 68418.m05723 disease resistance protein (TIR-NBS-LRR... 30 1.9
At4g15236.1 68417.m02335 ABC transporter family protein similar ... 30 1.9
At3g29800.1 68416.m03792 AAA-type ATPase family contains Pfam pr... 30 1.9
At2g29940.1 68415.m03642 ABC transporter family protein similar ... 30 1.9
At2g17060.1 68415.m01970 disease resistance protein (TIR-NBS-LRR... 30 1.9
At1g60700.1 68414.m06833 forkhead-associated domain-containing p... 30 1.9
At1g15210.1 68414.m01818 ABC transporter family protein Similar ... 30 1.9
At5g63200.1 68418.m07935 tetratricopeptide repeat (TPR)-containi... 29 2.6
At5g47040.1 68418.m05797 Lon protease homolog 1, mitochondrial (... 29 2.6
At4g15570.1 68417.m02379 tRNA-splicing endonuclease positive eff... 29 2.6
At4g15230.1 68417.m02333 ABC transporter family protein similar ... 29 2.6
At3g16340.1 68416.m02066 ABC transporter family protein similar ... 29 2.6
At1g63160.1 68414.m07138 replication factor C 40 kDa, putative s... 29 2.6
At1g59870.1 68414.m06745 ABC transporter family protein similar ... 29 2.6
At4g30490.1 68417.m04329 AFG1-like ATPase family protein contain... 29 3.4
At3g53480.1 68416.m05904 ABC transporter family protein PDR5-lik... 29 3.4
At1g73170.1 68414.m08466 expressed protein 29 3.4
At1g24290.1 68414.m03065 AAA-type ATPase family protein similar ... 29 3.4
At5g17890.1 68418.m02098 LIM domain-containing protein / disease... 29 4.5
At5g11710.1 68418.m01368 epsin N-terminal homology (ENTH) domain... 29 4.5
At5g11250.1 68418.m01314 disease resistance protein (TIR-NBS-LRR... 29 4.5
At3g24530.1 68416.m03080 AAA-type ATPase family protein / ankyri... 29 4.5
At5g35970.1 68418.m04332 DNA-binding protein, putative similar t... 28 5.9
At4g26090.1 68417.m03756 disease resistance protein RPS2 (CC-NBS... 28 5.9
At3g04220.1 68416.m00446 disease resistance protein (TIR-NBS-LRR... 28 5.9
At1g63880.1 68414.m07234 disease resistance protein (TIR-NBS-LRR... 28 5.9
At1g06720.1 68414.m00714 expressed protein contains Pfam domain,... 28 5.9
At5g58120.1 68418.m07272 disease resistance protein (TIR-NBS-LRR... 28 7.9
At5g22010.1 68418.m02561 AAA-type ATPase family protein / BRCT d... 28 7.9
At4g38870.1 68417.m05504 F-box family protein contains Pfam prof... 28 7.9
At4g28070.1 68417.m04026 AFG1-like ATPase family protein contain... 28 7.9
At1g79050.1 68414.m09217 DNA repair protein recA identical to DN... 28 7.9
>At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit,
putative almost identical to 26S proteasome AAA-ATPase
subunit RPT6a GI:6652888 from [Arabidopsis thaliana];
almost identical to a member of conserved Sug1 CAD
family AtSUG1 GI:13537115 from [Arabidopsis thaliana]
Length = 419
Score = 170 bits (413), Expect = 1e-42
Identities = 76/84 (90%), Positives = 84/84 (100%)
Frame = +2
Query: 509 PDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAV 688
PDSTY+M+GGLD+QIKEIKEVIELP+KHPELF++LGIAQPKGVLLYGPPGTGKTLLARAV
Sbjct: 156 PDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAV 215
Query: 689 AHHTECTFIRVSGSELVQKFIGEG 760
AHHT+CTFIRVSGSELVQK+IGEG
Sbjct: 216 AHHTDCTFIRVSGSELVQKYIGEG 239
Score = 169 bits (412), Expect = 1e-42
Identities = 81/128 (63%), Positives = 99/128 (77%)
Frame = +3
Query: 126 KGEGFRPYYITKIEELQLIVAEKSQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGE 305
+GEG YY+ ++ELQ + EKS NL RL+AQRNELN++VRMLR GSYVGE
Sbjct: 28 QGEGLNKYYLQHLDELQRLQREKSYNLNRLEAQRNELNSRVRMLREELQLLQEPGSYVGE 87
Query: 306 VVKPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLV 485
VVK M K KVLVKVHPEGK+VVD+DK++DI +T + RVALRN+SY LH +LP+KVDPLV
Sbjct: 88 VVKVMGKNKVLVKVHPEGKYVVDIDKSIDITKLTPSTRVALRNDSYVLHLVLPSKVDPLV 147
Query: 486 SLMMVEKV 509
+LM VEKV
Sbjct: 148 NLMKVEKV 155
>At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a)
Length = 419
Score = 170 bits (413), Expect = 1e-42
Identities = 76/84 (90%), Positives = 84/84 (100%)
Frame = +2
Query: 509 PDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAV 688
PDSTY+M+GGLD+QIKEIKEVIELP+KHPELF++LGIAQPKGVLLYGPPGTGKTLLARAV
Sbjct: 156 PDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAV 215
Query: 689 AHHTECTFIRVSGSELVQKFIGEG 760
AHHT+CTFIRVSGSELVQK+IGEG
Sbjct: 216 AHHTDCTFIRVSGSELVQKYIGEG 239
Score = 168 bits (409), Expect = 3e-42
Identities = 80/128 (62%), Positives = 99/128 (77%)
Frame = +3
Query: 126 KGEGFRPYYITKIEELQLIVAEKSQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGE 305
+GEG + YY+ I ELQ + +K+ NL RL+AQRNELN++VRMLR GSYVGE
Sbjct: 28 QGEGLKQYYLQHIHELQRQLRQKTNNLNRLEAQRNELNSRVRMLREELQLLQEPGSYVGE 87
Query: 306 VVKPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLV 485
VVK M K KVLVKVHPEGK+VVD+DK++DI +T + RVALRN+SY LH +LP+KVDPLV
Sbjct: 88 VVKVMGKNKVLVKVHPEGKYVVDIDKSIDITKITPSTRVALRNDSYVLHLVLPSKVDPLV 147
Query: 486 SLMMVEKV 509
+LM VEKV
Sbjct: 148 NLMKVEKV 155
>At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1a)
similar to 26S proteasome ATPase subunit GI:1395190 from
[Spinacia oleracea]
Length = 426
Score = 124 bits (300), Expect = 5e-29
Identities = 58/86 (67%), Positives = 69/86 (80%)
Frame = +2
Query: 503 ESPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLAR 682
E PD TY VGG +QI++++EV+ELP+ HPE F LGI PKGVL YGPPGTGKTLLAR
Sbjct: 161 EKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLAR 220
Query: 683 AVAHHTECTFIRVSGSELVQKFIGEG 760
AVA+ T+ FIRV GSELVQK++GEG
Sbjct: 221 AVANRTDACFIRVIGSELVQKYVGEG 246
Score = 42.3 bits (95), Expect = 3e-04
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Frame = +3
Query: 303 EVVKP-MDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDP 479
+++ P + K ++ V KFVV L V D+ RV + Y + LP K+DP
Sbjct: 93 KIISPNTEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDP 152
Query: 480 LVSLMMVEK 506
V++M VE+
Sbjct: 153 SVTMMTVEE 161
>At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit,
putative similar to 26S proteasome AAA-ATPase subunit
RPT1 SP:Q41365 from [Spinacia oleracea]
Length = 464
Score = 122 bits (295), Expect = 2e-28
Identities = 57/86 (66%), Positives = 69/86 (80%)
Frame = +2
Query: 503 ESPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLAR 682
E PD+TY +GG +QI++I+EV+ELP+ HPE F LGI PKGVL YGPPG+GKTL+AR
Sbjct: 198 EKPDATYSDIGGCKEQIEKIREVVELPMLHPEKFVRLGIDPPKGVLCYGPPGSGKTLVAR 257
Query: 683 AVAHHTECTFIRVSGSELVQKFIGEG 760
AVA+ T FIRV GSELVQK+IGEG
Sbjct: 258 AVANRTGACFIRVVGSELVQKYIGEG 283
Score = 44.4 bits (100), Expect = 8e-05
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Frame = +3
Query: 303 EVVKP-MDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDP 479
+++ P + K +V + GK+VV L D+ A RV + + Y + LP K+DP
Sbjct: 130 QIISPNTEDAKYVVDIKKIGKYVVGLGDKASPTDIEAGMRVGVDQKKYQIQIPLPPKIDP 189
Query: 480 LVSLMMVEK 506
V++M VE+
Sbjct: 190 SVTMMTVEE 198
>At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2a)
almost identical to 26S proteasome AAA-ATPase subunit
RPT2a (GI:6652880) {Arabidopsis thaliana}; Drosophila
melanogaster 26S proteasome subunit 4 ATPase,
PID:g1066065
Length = 443
Score = 120 bits (290), Expect = 8e-28
Identities = 52/86 (60%), Positives = 71/86 (82%)
Frame = +2
Query: 503 ESPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLAR 682
++P +Y +GGL+ QI+EIKE +ELP+ HPEL++ +GI PKGV+LYG PGTGKTLLA+
Sbjct: 181 KAPLESYADIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAK 240
Query: 683 AVAHHTECTFIRVSGSELVQKFIGEG 760
AVA+ T TF+RV GSEL+QK++G+G
Sbjct: 241 AVANSTSATFLRVVGSELIQKYLGDG 266
Score = 39.5 bits (88), Expect = 0.002
Identities = 35/139 (25%), Positives = 68/139 (48%)
Frame = +3
Query: 90 MTLTTKMEVDTVKGEGFRPYYITKIEELQLIVAEKSQNLRRLQAQRNELNAKVRMLRXXX 269
+T +TK ++ +K E + Y + + E VA + + L+ + + E +KV LR
Sbjct: 55 VTPSTKCKLRLLKLERIKDYLLMEEE----FVANQ-ERLKPQEEKAEEDRSKVDDLRGTP 109
Query: 270 XXXXXXGSYVGEVVKPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTL 449
VG + + +D+ +V ++ V + VD + + C + + N+ ++
Sbjct: 110 MS-------VGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSV 162
Query: 450 HKILPNKVDPLVSLMMVEK 506
IL ++VDP+VS+M VEK
Sbjct: 163 VGILQDEVDPMVSVMKVEK 181
>At2g20140.1 68415.m02353 26S protease regulatory complex subunit 4,
putative similar to Swiss-Prot:P48601 26S protease
regulatory subunit 4 (P26S4) [Drosophila melanogaster]
Length = 443
Score = 120 bits (290), Expect = 8e-28
Identities = 52/86 (60%), Positives = 71/86 (82%)
Frame = +2
Query: 503 ESPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLAR 682
++P +Y +GGL+ QI+EIKE +ELP+ HPEL++ +GI PKGV+LYG PGTGKTLLA+
Sbjct: 181 KAPLESYADIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAK 240
Query: 683 AVAHHTECTFIRVSGSELVQKFIGEG 760
AVA+ T TF+RV GSEL+QK++G+G
Sbjct: 241 AVANSTSATFLRVVGSELIQKYLGDG 266
Score = 39.5 bits (88), Expect = 0.002
Identities = 35/139 (25%), Positives = 68/139 (48%)
Frame = +3
Query: 90 MTLTTKMEVDTVKGEGFRPYYITKIEELQLIVAEKSQNLRRLQAQRNELNAKVRMLRXXX 269
+T +TK ++ +K E + Y + + E VA + + L+ + + E +KV LR
Sbjct: 55 VTPSTKCKLRLLKLERIKDYLLMEEE----FVANQ-ERLKPQEEKAEEDRSKVDDLRGTP 109
Query: 270 XXXXXXGSYVGEVVKPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTL 449
VG + + +D+ +V ++ V + VD + + C + + N+ ++
Sbjct: 110 MS-------VGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSV 162
Query: 450 HKILPNKVDPLVSLMMVEK 506
IL ++VDP+VS+M VEK
Sbjct: 163 VGILQDEVDPMVSVMKVEK 181
>At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3)
identical to 26S proteasome AAA-ATPase subunit RPT3
GI:6652882 from [Arabidopsis thaliana]
Length = 408
Score = 119 bits (287), Expect = 2e-27
Identities = 53/86 (61%), Positives = 67/86 (77%)
Frame = +2
Query: 503 ESPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLAR 682
E PD +Y +GG D Q +EI+E +ELP+ H EL+ +GI P+GVLLYGPPGTGKT+LA+
Sbjct: 148 EKPDVSYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAK 207
Query: 683 AVAHHTECTFIRVSGSELVQKFIGEG 760
AVA+HT FIRV GSE VQK++GEG
Sbjct: 208 AVANHTTAAFIRVVGSEFVQKYLGEG 233
>At1g09100.1 68414.m01016 26S protease regulatory subunit 6A,
putative identical to SP:O04019 from [Arabidopsis
thaliana]
Length = 423
Score = 114 bits (274), Expect = 7e-26
Identities = 57/107 (53%), Positives = 72/107 (67%), Gaps = 1/107 (0%)
Frame = +2
Query: 443 YLTQNTTQQSRSSCV-AHDGRESPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGI 619
YL +T S V A + E P Y +GGL+KQI+E+ E I LP+ H E F+ LGI
Sbjct: 142 YLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKEQFEKLGI 201
Query: 620 AQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEG 760
PKGVLLYGPPGTGKTL+ARA A T TF++++G +LVQ FIG+G
Sbjct: 202 RPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDG 248
>At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5a)
identical to GB:AAF22525 GI:6652886 from [Arabidopsis
thaliana]
Length = 424
Score = 113 bits (273), Expect = 9e-26
Identities = 56/107 (52%), Positives = 72/107 (67%), Gaps = 1/107 (0%)
Frame = +2
Query: 443 YLTQNTTQQSRSSCV-AHDGRESPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGI 619
YL +T S V A + E P Y +GGL+KQI+E+ E I LP+ H E F+ LG+
Sbjct: 143 YLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFEKLGV 202
Query: 620 AQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEG 760
PKGVLLYGPPGTGKTL+ARA A T TF++++G +LVQ FIG+G
Sbjct: 203 RPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDG 249
>At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4a)
gb|AAF22524.1
Length = 399
Score = 105 bits (252), Expect = 3e-23
Identities = 49/86 (56%), Positives = 65/86 (75%), Gaps = 1/86 (1%)
Frame = +2
Query: 503 ESPDS-TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLA 679
E P + +Y VGGL QI+E++E IELP+ +PELF +GI PKGVLLYGPPGTGKTLLA
Sbjct: 131 EDPGNISYSAVGGLGDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLA 190
Query: 680 RAVAHHTECTFIRVSGSELVQKFIGE 757
RA+A + + F++V S ++ K+IGE
Sbjct: 191 RAIASNIDANFLKVVSSAIIDKYIGE 216
Score = 55.6 bits (128), Expect = 3e-08
Identities = 33/113 (29%), Positives = 60/113 (53%)
Frame = +3
Query: 165 EELQLIVAEKSQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVLVK 344
+EL+ V +NLR + + N+ ++ L+ G +GEV++P+D ++++VK
Sbjct: 26 KELESRVRTARENLRGAKKEFNKTEDDLKSLQSV-------GQIIGEVLRPLDNERLIVK 78
Query: 345 VHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVE 503
++VV VD +T+ RV L + T+ + LP +VDP+V M+ E
Sbjct: 79 ASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHE 131
>At1g45000.1 68414.m05158 26S proteasome regulatory complex subunit
p42D, putative similar to 26S proteasome regulatory
complex subunit p42D [Drosophila melanogaster]
gi|6434958|gb|AAF08391
Length = 399
Score = 105 bits (252), Expect = 3e-23
Identities = 49/86 (56%), Positives = 65/86 (75%), Gaps = 1/86 (1%)
Frame = +2
Query: 503 ESPDS-TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLA 679
E P + +Y VGGL QI+E++E IELP+ +PELF +GI PKGVLLYGPPGTGKTLLA
Sbjct: 131 EDPGNISYSAVGGLGDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLA 190
Query: 680 RAVAHHTECTFIRVSGSELVQKFIGE 757
RA+A + + F++V S ++ K+IGE
Sbjct: 191 RAIASNIDANFLKVVSSAIIDKYIGE 216
Score = 56.0 bits (129), Expect = 3e-08
Identities = 33/113 (29%), Positives = 60/113 (53%)
Frame = +3
Query: 165 EELQLIVAEKSQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVLVK 344
+EL+ V +NLR + + N+ ++ L+ G +GEV++P+D ++++VK
Sbjct: 26 KELESRVRTARENLRAAKKEFNKTEDDLKSLQSV-------GQIIGEVLRPLDNERLIVK 78
Query: 345 VHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVE 503
++VV VD +T+ RV L + T+ + LP +VDP+V M+ E
Sbjct: 79 ASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHE 131
>At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)
(CDC48) identical to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}
Length = 809
Score = 104 bits (249), Expect = 7e-23
Identities = 44/88 (50%), Positives = 65/88 (73%)
Frame = +2
Query: 494 DGRESPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTL 673
D D Y+ VGG+ KQ+ +I+E++ELP++HP+LF ++G+ PKG+LLYGPPG+GKTL
Sbjct: 197 DEERLDDVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTL 256
Query: 674 LARAVAHHTECTFIRVSGSELVQKFIGE 757
+ARAVA+ T F ++G E++ K GE
Sbjct: 257 IARAVANETGAFFFCINGPEIMSKLAGE 284
Score = 92.3 bits (219), Expect = 3e-19
Identities = 39/85 (45%), Positives = 59/85 (69%)
Frame = +2
Query: 503 ESPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLAR 682
E P+ ++ +GGL+ +E++E ++ PV+HPE F+ G++ KGVL YGPPG GKTLLA+
Sbjct: 473 EVPNVSWNDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAK 532
Query: 683 AVAHHTECTFIRVSGSELVQKFIGE 757
A+A+ + FI V G EL+ + GE
Sbjct: 533 AIANECQANFISVKGPELLTMWFGE 557
>At5g03340.1 68418.m00286 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain; supporting cDNA
gi|26449351|dbj|AK117125.1|
Length = 810
Score = 103 bits (246), Expect = 2e-22
Identities = 42/79 (53%), Positives = 63/79 (79%)
Frame = +2
Query: 521 YEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT 700
Y+ VGG+ KQ+ +I+E++ELP++HP+LF ++G+ PKG+LLYGPPG+GKTL+ARAVA+ T
Sbjct: 206 YDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET 265
Query: 701 ECTFIRVSGSELVQKFIGE 757
F ++G E++ K GE
Sbjct: 266 GAFFFCINGPEIMSKLAGE 284
Score = 94.3 bits (224), Expect = 8e-20
Identities = 40/85 (47%), Positives = 60/85 (70%)
Frame = +2
Query: 503 ESPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLAR 682
E P+ ++E +GGL+ +E++E ++ PV+HPE F+ G++ KGVL YGPPG GKTLLA+
Sbjct: 473 EVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAK 532
Query: 683 AVAHHTECTFIRVSGSELVQKFIGE 757
A+A+ + FI V G EL+ + GE
Sbjct: 533 AIANECQANFISVKGPELLTMWFGE 557
>At3g53230.1 68416.m05865 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain
Length = 815
Score = 103 bits (246), Expect = 2e-22
Identities = 42/79 (53%), Positives = 63/79 (79%)
Frame = +2
Query: 521 YEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT 700
Y+ VGG+ KQ+ +I+E++ELP++HP+LF ++G+ PKG+LLYGPPG+GKTL+ARAVA+ T
Sbjct: 207 YDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET 266
Query: 701 ECTFIRVSGSELVQKFIGE 757
F ++G E++ K GE
Sbjct: 267 GAFFFCINGPEIMSKLAGE 285
Score = 94.7 bits (225), Expect = 6e-20
Identities = 42/102 (41%), Positives = 64/102 (62%)
Frame = +2
Query: 452 QNTTQQSRSSCVAHDGRESPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPK 631
Q S S + E P+ ++E +GGL+ +E++E ++ PV+HPE F+ G++ K
Sbjct: 457 QTALGNSNPSALRETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSK 516
Query: 632 GVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGE 757
GVL YGPPG GKTLLA+A+A+ + FI + G EL+ + GE
Sbjct: 517 GVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGE 558
>At5g15250.1 68418.m01786 FtsH protease, putative similar to
FtsH-like protein Pftf precursor GI:4325041 from
[Nicotiana tabacum]
Length = 687
Score = 86.2 bits (204), Expect = 2e-17
Identities = 41/81 (50%), Positives = 56/81 (69%)
Frame = +2
Query: 518 TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHH 697
T+E V G+D+ ++ +E++E +K PE F ALG PKGVLL GPPGTGKTLLA+A+A
Sbjct: 221 TFEDVAGVDEAKQDFEEIVEF-LKTPEKFSALGAKIPKGVLLTGPPGTGKTLLAKAIAGE 279
Query: 698 TECTFIRVSGSELVQKFIGEG 760
F +SGSE ++ F+G G
Sbjct: 280 AGVPFFSLSGSEFIEMFVGVG 300
>At4g24860.1 68417.m03559 AAA-type ATPase family protein contains Pfam
profile PF00004: ATPase, AAA family
Length = 1122
Score = 85.8 bits (203), Expect = 3e-17
Identities = 39/87 (44%), Positives = 60/87 (68%), Gaps = 1/87 (1%)
Frame = +2
Query: 512 DSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPPGTGKTLLARAV 688
D T++ +G L+K +KE++ LP++ PELF + +P KG+LL+GPPGTGKT+LA+AV
Sbjct: 816 DVTFDDIGALEKVKDILKELVMLPLQRPELFCKGELTKPCKGILLFGPPGTGKTMLAKAV 875
Query: 689 AHHTECTFIRVSGSELVQKFIGEGREW 769
A + FI +S S + K+ GEG ++
Sbjct: 876 AKEADANFINISMSSITSKWFGEGEKY 902
>At2g30950.1 68415.m03775 FtsH protease (VAR2) identical to zinc
dependent protease VAR2 GI:7650138 from [Arabidopsis
thaliana]
Length = 695
Score = 85.0 bits (201), Expect = 5e-17
Identities = 41/81 (50%), Positives = 55/81 (67%)
Frame = +2
Query: 518 TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHH 697
T++ V G+D+ ++ EV+E +K PE F A+G PKGVLL GPPGTGKTLLA+A+A
Sbjct: 225 TFDDVAGVDEAKQDFMEVVEF-LKKPERFTAVGAKIPKGVLLIGPPGTGKTLLAKAIAGE 283
Query: 698 TECTFIRVSGSELVQKFIGEG 760
F +SGSE V+ F+G G
Sbjct: 284 AGVPFFSISGSEFVEMFVGVG 304
>At1g06430.1 68414.m00680 FtsH protease, putative similar to zinc
dependent protease GI:7650138 from [Arabidopsis
thaliana]
Length = 685
Score = 85.0 bits (201), Expect = 5e-17
Identities = 41/81 (50%), Positives = 55/81 (67%)
Frame = +2
Query: 518 TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHH 697
T++ V G+D+ ++ EV+E +K PE F A+G PKGVLL GPPGTGKTLLA+A+A
Sbjct: 218 TFDDVAGVDEAKQDFMEVVEF-LKKPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGE 276
Query: 698 TECTFIRVSGSELVQKFIGEG 760
F +SGSE V+ F+G G
Sbjct: 277 AGVPFFSISGSEFVEMFVGVG 297
>At4g02480.1 68417.m00335 AAA-type ATPase family protein contains Pfam
domain, PF00004: ATPase, AAA family; similar to Spastin
(Swiss-Prot:Q9UBP0) [Homo sapiens] and Spastin (Fragment)
(Swiss-Prot:Q9QYY8) [Mus musculus]; similar to
mitochondrial sorting protein 1 (MSP1) protein
(TAT-binding homolog 4) (Swiss-Prot:P28737)
[Saccharomyces cerevisiae]
Length = 1265
Score = 83.8 bits (198), Expect = 1e-16
Identities = 37/85 (43%), Positives = 59/85 (69%), Gaps = 1/85 (1%)
Frame = +2
Query: 518 TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPPGTGKTLLARAVAH 694
+++ +G L+ + +KE++ LP++ PELFD + +P KG+LL+GPPGTGKT+LA+AVA
Sbjct: 961 SFDDIGALENVKETLKELVMLPLQRPELFDKGQLTKPTKGILLFGPPGTGKTMLAKAVAT 1020
Query: 695 HTECTFIRVSGSELVQKFIGEGREW 769
FI +S S + K+ GEG ++
Sbjct: 1021 EAGANFINISMSSITSKWFGEGEKY 1045
>At3g56690.1 68416.m06306 calmodulin-binding protein identical to
calmodulin-binding protein GI:6760428 from [Arabidopsis
thaliana]
Length = 1022
Score = 83.8 bits (198), Expect = 1e-16
Identities = 39/105 (37%), Positives = 59/105 (56%)
Frame = +2
Query: 452 QNTTQQSRSSCVAHDGRESPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPK 631
+N + R S + E P +E VGG ++ ++ E +E P KH + F +G P
Sbjct: 700 ENAKTKIRPSAMREVILEVPKVNWEDVGGQNEVKNQLMEAVEWPQKHQDAFKRIGTRPPS 759
Query: 632 GVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGRE 766
G+L++GPPG KTL+ARAVA + F+ V G EL K++GE +
Sbjct: 760 GILMFGPPGCSKTLMARAVASEAKLNFLAVKGPELFSKWVGESEK 804
Score = 68.5 bits (160), Expect = 5e-12
Identities = 33/91 (36%), Positives = 53/91 (58%)
Frame = +2
Query: 494 DGRESPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTL 673
D E+ +GGL K+ ++++I+ L +LG+ KGVL++GPPGTGKT
Sbjct: 375 DEGENVGCEISKLGGLSKEYAILRDIIDSSSIKNSL-SSLGLRPTKGVLIHGPPGTGKTS 433
Query: 674 LARAVAHHTECTFIRVSGSELVQKFIGEGRE 766
LAR A H+ F V+G E++ +++GE +
Sbjct: 434 LARTFARHSGVNFFSVNGPEIISQYLGESEK 464
>At1g03000.1 68414.m00271 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 941
Score = 82.6 bits (195), Expect = 3e-16
Identities = 39/86 (45%), Positives = 56/86 (65%)
Frame = +2
Query: 509 PDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAV 688
P+ ++ VGGL+ I + ++LP+ H +LF + G+ + GVLLYGPPGTGKTLLA+AV
Sbjct: 653 PNVKWDDVGGLEDVKTSILDTVQLPLLHKDLFSS-GLRKRSGVLLYGPPGTGKTLLAKAV 711
Query: 689 AHHTECTFIRVSGSELVQKFIGEGRE 766
A F+ V G EL+ +IGE +
Sbjct: 712 ATECSLNFLSVKGPELINMYIGESEK 737
>At3g01610.1 68416.m00092 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 820
Score = 81.8 bits (193), Expect = 5e-16
Identities = 35/83 (42%), Positives = 52/83 (62%)
Frame = +2
Query: 509 PDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAV 688
PD ++ VGGLD + I P+K P+++ A G+ G LLYGPPG GKTL+A+A
Sbjct: 523 PDVKWDDVGGLDHLRLQFNRYIVRPIKKPDIYKAFGVDLETGFLLYGPPGCGKTLIAKAA 582
Query: 689 AHHTECTFIRVSGSELVQKFIGE 757
A+ F+ + G+EL+ K++GE
Sbjct: 583 ANEAGANFMHIKGAELLNKYVGE 605
Score = 69.7 bits (163), Expect = 2e-12
Identities = 31/91 (34%), Positives = 53/91 (58%)
Frame = +2
Query: 494 DGRESPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTL 673
+G + P T++ GG+ K + E++ + P+ +PE F +G+ P G+L +GPPG GKT
Sbjct: 225 EGTKGP--TFKDFGGIKKILDELEMNVLFPILNPEPFKKIGVKPPSGILFHGPPGCGKTK 282
Query: 674 LARAVAHHTECTFIRVSGSELVQKFIGEGRE 766
LA A+A+ F ++S +E++ G E
Sbjct: 283 LANAIANEAGVPFYKISATEVISGVSGASEE 313
>At2g34560.2 68415.m04246 katanin, putative similar to katanin p60
subunit [Strongylocentrotus purpuratus] GI:3098603;
contains Pfam profile PF00004: ATPase AAA family
Length = 393
Score = 81.0 bits (191), Expect = 8e-16
Identities = 37/89 (41%), Positives = 58/89 (65%)
Frame = +2
Query: 500 RESPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLA 679
R +P+ +E + GL+ K +KE + +P+K+P F+ L + KG+LL+GPPGTGKT+LA
Sbjct: 104 RGNPNIKWESIKGLENAKKLLKEAVVMPIKYPTYFNGL-LTPWKGILLFGPPGTGKTMLA 162
Query: 680 RAVAHHTECTFIRVSGSELVQKFIGEGRE 766
+AVA TF +S S +V K+ G+ +
Sbjct: 163 KAVATECNTTFFNISASSVVSKWRGDSEK 191
>At2g34560.1 68415.m04245 katanin, putative similar to katanin p60
subunit [Strongylocentrotus purpuratus] GI:3098603;
contains Pfam profile PF00004: ATPase AAA family
Length = 384
Score = 81.0 bits (191), Expect = 8e-16
Identities = 37/89 (41%), Positives = 58/89 (65%)
Frame = +2
Query: 500 RESPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLA 679
R +P+ +E + GL+ K +KE + +P+K+P F+ L + KG+LL+GPPGTGKT+LA
Sbjct: 95 RGNPNIKWESIKGLENAKKLLKEAVVMPIKYPTYFNGL-LTPWKGILLFGPPGTGKTMLA 153
Query: 680 RAVAHHTECTFIRVSGSELVQKFIGEGRE 766
+AVA TF +S S +V K+ G+ +
Sbjct: 154 KAVATECNTTFFNISASSVVSKWRGDSEK 182
>At5g53540.1 68418.m06653 MSP1 protein, putative /
intramitochondrial sorting protein, putative similar to
Swiss-Prot:P28737 MSP1 protein (TAT-binding homolog 4)
[Saccharomyces cerevisiae]; contains Pfam domain,
PF00004: ATPase, AAA family
Length = 403
Score = 80.6 bits (190), Expect = 1e-15
Identities = 39/86 (45%), Positives = 57/86 (66%), Gaps = 1/86 (1%)
Frame = +2
Query: 512 DSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPPGTGKTLLARAV 688
D + +GGL+ + + E++ LP+K PELF + P KGVLLYGPPGTGKT+LA+A+
Sbjct: 83 DVEFGSIGGLESIKQALYELVILPLKRPELFAYGKLLGPQKGVLLYGPPGTGKTMLAKAI 142
Query: 689 AHHTECTFIRVSGSELVQKFIGEGRE 766
A +E FI V S L+ K+ G+ ++
Sbjct: 143 ARESEAVFINVKVSNLMSKWFGDAQK 168
>At2g03670.1 68415.m00326 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 603
Score = 79.8 bits (188), Expect = 2e-15
Identities = 35/86 (40%), Positives = 56/86 (65%)
Frame = +2
Query: 503 ESPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLAR 682
E P T++ VGGL K++++ +E P+KH F +GI+ +G+LL+GPPG KT LA+
Sbjct: 279 EIPKVTWDDVGGLKDLKKKLQQAVEWPIKHSAAFVKMGISPMRGILLHGPPGCSKTTLAK 338
Query: 683 AVAHHTECTFIRVSGSELVQKFIGEG 760
A A+ + +F +S +EL ++GEG
Sbjct: 339 AAANAAQASFFSLSCAELFSMYVGEG 364
Score = 63.3 bits (147), Expect = 2e-10
Identities = 29/79 (36%), Positives = 47/79 (59%)
Frame = +2
Query: 530 VGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT 709
+GG ++ ++ ++E+I P ++P LG+ P+G+LLYGPPGTGKT L RAV +
Sbjct: 24 IGGNERALQALRELIIFPFRYPLEARTLGLKWPRGLLLYGPPGTGKTSLVRAVVQECDAH 83
Query: 710 FIRVSGSELVQKFIGEGRE 766
I +S + + GE +
Sbjct: 84 LIVLSPHSVHRAHAGESEK 102
>At5g58870.1 68418.m07376 FtsH protease, putative contains
similarity to cell division protein FtsH homolog 3
SP:P73437 (EC 3.4.24.-) [strain PCC6803] {Synechocystis
sp.}
Length = 806
Score = 79.4 bits (187), Expect = 2e-15
Identities = 46/109 (42%), Positives = 69/109 (63%), Gaps = 5/109 (4%)
Frame = +2
Query: 449 TQNTTQQ--SRSSCVAHDGRESPDS---TYEMVGGLDKQIKEIKEVIELPVKHPELFDAL 613
+Q+TT Q +R S G+ S D T+ V G+D+ +E++E++E +K+P+ + L
Sbjct: 299 SQSTTGQLRTRKSGGPGGGKVSGDGETITFADVAGVDEAKEELEEIVEF-LKNPDRYVRL 357
Query: 614 GIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEG 760
G P+GVLL G PGTGKTLLA+AVA ++ FI S SE V+ ++G G
Sbjct: 358 GARPPRGVLLVGLPGTGKTLLAKAVAGESDVPFISCSASEFVELYVGMG 406
>At1g02890.1 68414.m00256 AAA-type ATPase family protein contains Pfam
domain, PF00004: ATPase, AAA family; similar to
mitochondrial sorting protein 1 (MSP1) (TAT-binding
homolog 4) (Swiss-Prot:P28737) [Saccharomyces cerevisiae]
Length = 1252
Score = 79.4 bits (187), Expect = 2e-15
Identities = 36/85 (42%), Positives = 56/85 (65%), Gaps = 1/85 (1%)
Frame = +2
Query: 518 TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPPGTGKTLLARAVAH 694
++ +G L+ +KE++ LP++ PELF + +P KG+LL+GPPGTGKT+LA+AVA
Sbjct: 948 SFSDIGALENVKDTLKELVMLPLQRPELFGKGQLTKPTKGILLFGPPGTGKTMLAKAVAT 1007
Query: 695 HTECTFIRVSGSELVQKFIGEGREW 769
FI +S S + K+ GEG ++
Sbjct: 1008 EAGANFINISMSSITSKWFGEGEKY 1032
>At4g23940.1 68417.m03443 FtsH protease, putative contains
similarity to zinc dependent protease GI:7650138 from
[Arabidopsis thaliana]
Length = 946
Score = 79.0 bits (186), Expect = 3e-15
Identities = 35/77 (45%), Positives = 55/77 (71%)
Frame = +2
Query: 530 VGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT 709
V G+D+ + E++E+++ +K+P+LFD +GI P GVLL GPPG GKTL+A+A+A
Sbjct: 432 VAGIDEAVDELQELVKY-LKNPDLFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP 490
Query: 710 FIRVSGSELVQKFIGEG 760
F +++GSE V+ +G G
Sbjct: 491 FYQMAGSEFVEVLVGVG 507
>At1g50140.1 68414.m05623 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 640
Score = 78.6 bits (185), Expect = 4e-15
Identities = 36/83 (43%), Positives = 55/83 (66%), Gaps = 1/83 (1%)
Frame = +2
Query: 521 YEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPPGTGKTLLARAVAHH 697
+E +G L+ K + E++ LP++ PELF + +P KG+LL+GPPGTGKTLLA+A+A
Sbjct: 350 FEDIGALEDVKKALNELVILPMRRPELFARGNLLRPCKGILLFGPPGTGKTLLAKALATE 409
Query: 698 TECTFIRVSGSELVQKFIGEGRE 766
FI ++GS L K+ G+ +
Sbjct: 410 AGANFISITGSTLTSKWFGDAEK 432
>At1g64110.2 68414.m07264 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 829
Score = 78.2 bits (184), Expect = 6e-15
Identities = 36/86 (41%), Positives = 60/86 (69%), Gaps = 1/86 (1%)
Frame = +2
Query: 503 ESPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPPGTGKTLLA 679
E + T++ +G LD+ + ++E++ LP++ P+LF G+ +P +G+LL+GPPGTGKT+LA
Sbjct: 514 EEINVTFKDIGALDEIKESLQELVMLPLRRPDLFTG-GLLKPCRGILLFGPPGTGKTMLA 572
Query: 680 RAVAHHTECTFIRVSGSELVQKFIGE 757
+A+A +FI VS S + K+ GE
Sbjct: 573 KAIAKEAGASFINVSMSTITSKWFGE 598
>At1g64110.1 68414.m07263 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 824
Score = 78.2 bits (184), Expect = 6e-15
Identities = 36/86 (41%), Positives = 60/86 (69%), Gaps = 1/86 (1%)
Frame = +2
Query: 503 ESPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPPGTGKTLLA 679
E + T++ +G LD+ + ++E++ LP++ P+LF G+ +P +G+LL+GPPGTGKT+LA
Sbjct: 509 EEINVTFKDIGALDEIKESLQELVMLPLRRPDLFTG-GLLKPCRGILLFGPPGTGKTMLA 567
Query: 680 RAVAHHTECTFIRVSGSELVQKFIGE 757
+A+A +FI VS S + K+ GE
Sbjct: 568 KAIAKEAGASFINVSMSTITSKWFGE 593
>At4g28000.1 68417.m04016 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 726
Score = 77.8 bits (183), Expect = 7e-15
Identities = 34/81 (41%), Positives = 58/81 (71%), Gaps = 1/81 (1%)
Frame = +2
Query: 518 TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPPGTGKTLLARAVAH 694
T+ +G LD+ + ++E++ LP++ P+LF G+ +P +G+LL+GPPGTGKT++A+A+A+
Sbjct: 412 TFADIGSLDETKESLQELVMLPLRRPDLFKG-GLLKPCRGILLFGPPGTGKTMMAKAIAN 470
Query: 695 HTECTFIRVSGSELVQKFIGE 757
+FI VS S + K+ GE
Sbjct: 471 EAGASFINVSMSTITSKWFGE 491
>At3g47060.1 68416.m05110 FtsH protease, putative contains
similarity to FtsH protease GI:13183728 from [Medicago
sativa]
Length = 802
Score = 77.8 bits (183), Expect = 7e-15
Identities = 38/81 (46%), Positives = 55/81 (67%)
Frame = +2
Query: 518 TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHH 697
T+ V G+D+ +E++E++E +++PE + LG P+GVLL G PGTGKTLLA+AVA
Sbjct: 323 TFADVAGVDEAKEELEEIVEF-LRNPEKYVRLGARPPRGVLLVGLPGTGKTLLAKAVAGE 381
Query: 698 TECTFIRVSGSELVQKFIGEG 760
E FI S SE V+ ++G G
Sbjct: 382 AEVPFISCSASEFVELYVGMG 402
>At3g19740.1 68416.m02499 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 439
Score = 77.8 bits (183), Expect = 7e-15
Identities = 35/83 (42%), Positives = 55/83 (66%), Gaps = 1/83 (1%)
Frame = +2
Query: 521 YEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPPGTGKTLLARAVAHH 697
++ +G L+ K + E++ LP++ PELF + +P KG+LL+GPPGTGKTLLA+A+A
Sbjct: 149 FDDIGALEHVKKTLNELVILPMRRPELFTRGNLLRPCKGILLFGPPGTGKTLLAKALATE 208
Query: 698 TECTFIRVSGSELVQKFIGEGRE 766
FI ++GS L K+ G+ +
Sbjct: 209 AGANFISITGSTLTSKWFGDAEK 231
>At2g27600.1 68415.m03346 AAA-type ATPase family protein / vacuolar
sorting protein-related similar to SP|P46467 SKD1
protein (Vacuolar sorting protein 4b) {Mus musculus};
contains Pfam profiles PF00004: ATPase AAA family,
PF04212: MIT domain
Length = 435
Score = 77.8 bits (183), Expect = 7e-15
Identities = 40/90 (44%), Positives = 57/90 (63%), Gaps = 1/90 (1%)
Frame = +2
Query: 500 RESPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPPGTGKTLL 676
RE P+ + V GL+ + ++E + LPVK P+ F G +P + LLYGPPGTGK+ L
Sbjct: 124 REKPNIKWSDVAGLESAKQALQEAVILPVKFPQFFT--GKRRPWRAFLLYGPPGTGKSYL 181
Query: 677 ARAVAHHTECTFIRVSGSELVQKFIGEGRE 766
A+AVA + TF VS S+LV K++GE +
Sbjct: 182 AKAVATEADSTFFSVSSSDLVSKWMGESEK 211
>At5g42270.1 68418.m05145 FtsH protease, putative similar to FtsH
protease GI:13183728 from [Medicago sativa]
Length = 704
Score = 77.0 bits (181), Expect = 1e-14
Identities = 41/89 (46%), Positives = 57/89 (64%), Gaps = 2/89 (2%)
Frame = +2
Query: 500 RESPDS--TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTL 673
+E P++ T+ V G D+ E++EV++ +K+P+ + ALG PKG LL GPPGTGKTL
Sbjct: 240 QEVPETGVTFGDVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTL 298
Query: 674 LARAVAHHTECTFIRVSGSELVQKFIGEG 760
LARAVA F + SE V+ F+G G
Sbjct: 299 LARAVAGEAGVPFFSCAASEFVELFVGVG 327
>At4g27680.1 68417.m03980 MSP1 protein, putative /
intramitochondrial sorting protein, putative similar to
Swiss-Prot:P28737 MSP1 protein (TAT-binding homolog 4)
[Saccharomyces cerevisiae]; contains Pfam domain,
PF00004: ATPase, AAA family
Length = 398
Score = 76.6 bits (180), Expect = 2e-14
Identities = 38/86 (44%), Positives = 56/86 (65%), Gaps = 1/86 (1%)
Frame = +2
Query: 512 DSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPPGTGKTLLARAV 688
D + +GGL+ + + E++ LP+K PELF + P KGVLLYGPPGTGKT+LA+A+
Sbjct: 80 DVEFGSIGGLETIKQALYELVILPLKRPELFAYGKLLGPQKGVLLYGPPGTGKTMLAKAI 139
Query: 689 AHHTECTFIRVSGSELVQKFIGEGRE 766
A + FI V S L+ K+ G+ ++
Sbjct: 140 AKESGAVFINVRVSNLMSKWFGDAQK 165
>At1g50250.1 68414.m05634 cell division protein ftsH homolog 1,
chloroplast (FTSH1) (FTSH) identical to SP:Q39102 Cell
division protein ftsH homolog 1, chloroplast
precursor (EC 3.4.24.-) [Arabidopsis thaliana]
Length = 716
Score = 75.8 bits (178), Expect = 3e-14
Identities = 40/89 (44%), Positives = 57/89 (64%), Gaps = 2/89 (2%)
Frame = +2
Query: 500 RESPDS--TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTL 673
+E P++ ++ V G D+ E++EV++ +K+P+ + ALG PKG LL GPPGTGKTL
Sbjct: 252 QEVPETGVSFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKTL 310
Query: 674 LARAVAHHTECTFIRVSGSELVQKFIGEG 760
LARAVA F + SE V+ F+G G
Sbjct: 311 LARAVAGEAGVPFFSCAASEFVELFVGVG 339
>At2g45500.1 68415.m05659 AAA-type ATPase family protein similar to
SP|Q9QYY8 Spastin (Fragment) {Mus musculus}; contains
Pfam profiles PF00004: ATPase AAA family, PF04212: MIT
domain
Length = 487
Score = 74.9 bits (176), Expect = 5e-14
Identities = 37/88 (42%), Positives = 57/88 (64%), Gaps = 1/88 (1%)
Frame = +2
Query: 506 SPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPPGTGKTLLAR 682
SP ++ V GL+ + + E++ LP K +LF G+ +P +G+LL+GPPG GKT+LA+
Sbjct: 210 SPSVKWDDVAGLNGAKQALLEMVILPAKRRDLFT--GLRRPARGLLLFGPPGNGKTMLAK 267
Query: 683 AVAHHTECTFIRVSGSELVQKFIGEGRE 766
AVA ++ TF VS S L K++GE +
Sbjct: 268 AVASESQATFFNVSASSLTSKWVGEAEK 295
>At1g05910.1 68414.m00620 cell division cycle protein 48-related /
CDC48-related similar to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}; contains Pfam
profiles PF00004: ATPase AAA family, PF00439:
Bromodomain
Length = 1210
Score = 74.9 bits (176), Expect = 5e-14
Identities = 35/87 (40%), Positives = 57/87 (65%), Gaps = 5/87 (5%)
Frame = +2
Query: 512 DSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVA 691
D ++ +GGL + I ++KE++ P+ +PE F + I P+GVLL GPPGTGKTL+ARA+A
Sbjct: 377 DINFDDIGGLSEYINDLKEMVFFPLLYPEFFASYSITPPRGVLLCGPPGTGKTLIARALA 436
Query: 692 -----HHTECTFIRVSGSELVQKFIGE 757
+ +F G++++ K++GE
Sbjct: 437 CAASKAGQKVSFYMRKGADVLSKWVGE 463
>At2g29080.1 68415.m03535 FtsH protease, putative similar to
AAA-metalloprotease FtsH [Pisum sativum] GI:15021761;
contains Pfam profiles PF01434: Peptidase family M41,
PF00004: ATPase AAA family
Length = 809
Score = 74.5 bits (175), Expect = 7e-14
Identities = 35/80 (43%), Positives = 53/80 (66%)
Frame = +2
Query: 521 YEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT 700
++ V G D+ +EI E + +K+P+ ++ LG PKG LL GPPGTGKTLLA+A A +
Sbjct: 321 FKDVAGCDEAKQEIMEFVHF-LKNPKKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES 379
Query: 701 ECTFIRVSGSELVQKFIGEG 760
F+ +SGS+ ++ F+G G
Sbjct: 380 GVPFLSISGSDFMEMFVGVG 399
>At3g27120.1 68416.m03393 spastin ATPase, putative similar to
SWISS-PROT:Q9QYY8 spastin (Fragment) [Mus musculus];
contains Pfam domain, PF00004: ATPase, AAA family
Length = 287
Score = 72.5 bits (170), Expect = 3e-13
Identities = 34/87 (39%), Positives = 55/87 (63%), Gaps = 1/87 (1%)
Frame = +2
Query: 509 PDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPPGTGKTLLARA 685
P+ ++ + GL+ K + E++ P+ P++F G P KG+LL+GPPGTGKT++ +A
Sbjct: 5 PNVRWDDIAGLEHAKKCVTEMVIWPLLRPDIFK--GCRSPGKGLLLFGPPGTGKTMIGKA 62
Query: 686 VAHHTECTFIRVSGSELVQKFIGEGRE 766
+A + TF +S S L K+IGEG +
Sbjct: 63 IAGEAKATFFYISASSLTSKWIGEGEK 89
>At2g26140.1 68415.m03137 FtsH protease, putative contains
similarity to YME1 GI:295582, a member of the
ftsH-SEC18-PAS1-CDC48 family of putative ATPase-encoding
genes from [Saccharomyces cerevisiae]
Length = 717
Score = 72.5 bits (170), Expect = 3e-13
Identities = 36/77 (46%), Positives = 49/77 (63%)
Frame = +2
Query: 530 VGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECT 709
V G+D+ E++E++ ++ P+ F LG PKGVLL GPPGTGKT+LARA+A
Sbjct: 229 VKGVDEAKAELEEIVHY-LRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVP 287
Query: 710 FIRVSGSELVQKFIGEG 760
F SGSE + F+G G
Sbjct: 288 FFSCSGSEFEEMFVGVG 304
>At1g80350.1 68414.m09406 katanin 1 (KTN1) identical to katanin 1
(KTN1) [Arabidopsis thaliana] GI:14133602
Length = 523
Score = 72.1 bits (169), Expect = 4e-13
Identities = 39/85 (45%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Frame = +2
Query: 506 SPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPPGTGKTLLAR 682
+P ++ V GL + + ++E + LP+ PE F GI +P KGVL++GPPGTGKTLLA+
Sbjct: 233 TPGVRWDDVAGLSEAKRLLEEAVVLPLWMPEYFQ--GIRRPWKGVLMFGPPGTGKTLLAK 290
Query: 683 AVAHHTECTFIRVSGSELVQKFIGE 757
AVA TF VS + L K+ GE
Sbjct: 291 AVATECGTTFFNVSSATLASKWRGE 315
>At1g07510.1 68414.m00804 FtsH protease, putative similar to
AAA-metalloprotease FtsH [Pisum sativum] GI:15021761;
contains Pfam profiles PF01434: Peptidase family M41,
PF00004: ATPase AAA family
Length = 813
Score = 71.7 bits (168), Expect = 5e-13
Identities = 33/80 (41%), Positives = 53/80 (66%)
Frame = +2
Query: 521 YEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT 700
++ V G ++ +EI E + +++P+ ++ LG PKG LL GPPGTGKTLLA+A A +
Sbjct: 326 FKDVAGCEEAKQEIMEFVHF-LQNPKKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES 384
Query: 701 ECTFIRVSGSELVQKFIGEG 760
F+ +SGS+ ++ F+G G
Sbjct: 385 AVPFLSISGSDFMEMFVGVG 404
>At5g53170.1 68418.m06610 FtsH protease, putative similar to
ATP-dependent metalloprotease FtsH1 GI:3600100 from [Mus
musculus]
Length = 806
Score = 71.3 bits (167), Expect = 6e-13
Identities = 37/81 (45%), Positives = 51/81 (62%)
Frame = +2
Query: 518 TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHH 697
T++ V G D +E++EV+E +K+P F LG PKG+LL G PGTGKTLLA+A+A
Sbjct: 360 TFKDVKGCDDAKQELEEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGE 418
Query: 698 TECTFIRVSGSELVQKFIGEG 760
F +GSE + F+G G
Sbjct: 419 AGVPFFYRAGSEFEEMFVGVG 439
>At5g64580.1 68418.m08116 AAA-type ATPase family protein similar to
zinc dependent protease [Arabidopsis thaliana]
GI:7650138; contains Pfam profile PF00004: ATPase AAA
family
Length = 855
Score = 70.5 bits (165), Expect = 1e-12
Identities = 34/84 (40%), Positives = 53/84 (63%)
Frame = +2
Query: 503 ESPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLAR 682
E T++ G + +E++E++ + +K+ E F GI PKGVLL+GPPGTGKTLLA+
Sbjct: 309 EKTGVTFDDFAGQEYIKRELQEIVRI-LKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAK 367
Query: 683 AVAHHTECTFIRVSGSELVQKFIG 754
A+A F +G++ V+ F+G
Sbjct: 368 AIAGEAGLPFFAANGTDFVEMFVG 391
>At3g02450.1 68416.m00232 cell division protein ftsH, putative
similar to SWISS-PROT:P46469 cell division protein ftsH
homolog [Lactococcus lactis]; contains Pfam domain,
PF00004: ATPase, AAA family ('A'TPases 'A'ssociated with
diverse cellular 'A'ctivities)
Length = 622
Score = 70.5 bits (165), Expect = 1e-12
Identities = 42/100 (42%), Positives = 57/100 (57%), Gaps = 1/100 (1%)
Frame = +2
Query: 464 QQSRSSCVAHDGR-ESPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVL 640
Q S S+ A R ++P ++ V G+D E+ E++ ++ + LG P+GVL
Sbjct: 313 QLSASNSPAKKRRSKNPTVGFDDVEGVDSAKDELVEIVSC-LQGSINYKKLGARLPRGVL 371
Query: 641 LYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEG 760
L GPPGTGKTLLARAVA F VS SE V+ F+G G
Sbjct: 372 LVGPPGTGKTLLARAVAGEAGVPFFSVSASEFVELFVGRG 411
>At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1)
identical to peroxisome biogenesis protein PEX1
[Arabidopsis thaliana] gi|12006272|gb|AAG44817; contains
Pfam profile PF00004: ATPase, AAA family; identical to
cDNA peroxisome biogenesis protein PEX1 (PEX1) mRNA,
partial cds GI:12006271
Length = 1130
Score = 68.5 bits (160), Expect = 5e-12
Identities = 36/82 (43%), Positives = 46/82 (56%)
Frame = +2
Query: 521 YEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT 700
+E VGG+ IKE+IELP K P++F + VLLYGPPG GKT + A A
Sbjct: 843 WEDVGGVTDIKNAIKEMIELPSKFPKIFAKSPLRLRSNVLLYGPPGCGKTHIVGAAAAAC 902
Query: 701 ECTFIRVSGSELVQKFIGEGRE 766
FI V G EL+ K+IG +
Sbjct: 903 SLRFISVKGPELLNKYIGASEQ 924
Score = 42.3 bits (95), Expect = 3e-04
Identities = 18/34 (52%), Positives = 23/34 (67%)
Frame = +2
Query: 602 FDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTE 703
F I P +L+YGPPG+GKT+LARA A + E
Sbjct: 585 FSKFKIPSPGHILIYGPPGSGKTILARAAAKYFE 618
>At3g16290.1 68416.m02056 FtsH protease, putative contains
similarity to cell division protein FtsH GI:1652085 from
[Synechocystis sp. PCC 6803]
Length = 876
Score = 66.5 bits (155), Expect = 2e-11
Identities = 33/83 (39%), Positives = 49/83 (59%)
Frame = +2
Query: 512 DSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVA 691
D + V GL K E++E+++ H E++ G+ P G+LL GPPG GKTLLA+AVA
Sbjct: 406 DVKFTDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVKIPGGILLCGPPGVGKTLLAKAVA 464
Query: 692 HHTECTFIRVSGSELVQKFIGEG 760
F +S S+ V+ ++G G
Sbjct: 465 GEAGVNFFSISASQFVEIYVGVG 487
>At3g15120.1 68416.m01913 AAA-type ATPase family protein contains
PROSITE domains, PS00674: AAA-protein family signature
and PS00017: ATP/GTP-binding site motif A (P-loop)
Length = 1954
Score = 65.3 bits (152), Expect = 4e-11
Identities = 30/84 (35%), Positives = 53/84 (63%), Gaps = 5/84 (5%)
Frame = +2
Query: 521 YEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAV---- 688
++ V GL+ + +KEV+ +P+ +PE FD LG+ P+G+LL+G PGTGKTL+ RA+
Sbjct: 718 WDSVAGLEGVTQCMKEVVLIPLLYPEFFDNLGLTPPRGILLHGHPGTGKTLVVRALIGSL 777
Query: 689 -AHHTECTFIRVSGSELVQKFIGE 757
+ + G++ + K++G+
Sbjct: 778 ARGNRRIAYFARKGADCLGKYVGD 801
>At1g62130.1 68414.m07010 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 1025
Score = 59.7 bits (138), Expect = 2e-09
Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Frame = +2
Query: 518 TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPPGTGKTLLARAVAH 694
T++ +G L+ +KE++ LP + PELF + +P G+LL+GP GTGKT+LA+AVA
Sbjct: 733 TFDDIGALENVKDTLKELVMLPFQWPELFCKGQLTKPCNGILLFGPSGTGKTMLAKAVAT 792
Query: 695 HTECTFIRVSGS 730
I +S S
Sbjct: 793 EAGANLINMSMS 804
>At4g04910.1 68417.m00714 AAA-type ATPase family protein similar to
SP|P18708 Vesicular-fusion protein NSF
(N-ethylmaleimide-sensitive fusion protein)
(NEM-sensitive fusion protein) {Cricetulus griseus};
contains Pfam profiles PF00004: ATPase AAA family,
PF02359: Cell division protein 48 (CDC48) N-terminal
domain; contains non-consensus AT-AC splice sites at
intron 2
Length = 742
Score = 56.8 bits (131), Expect = 1e-08
Identities = 31/78 (39%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Frame = +2
Query: 530 VGGLDKQIKEI-KEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTEC 706
+GGL + +I + V P + LGI KG+LL+GPPGTGKTL+AR +
Sbjct: 217 IGGLGAEFADIFRRAFASRVFPPHVTSRLGIKHVKGMLLFGPPGTGKTLMARQIGKMLNG 276
Query: 707 TFIR-VSGSELVQKFIGE 757
+ V+G E++ KF+GE
Sbjct: 277 KDPKIVNGPEVLSKFVGE 294
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +2
Query: 638 LLYGPPGTGKTLLARAVAHHTECTFIRVSGSE 733
LL GP G+GKT LA + ++ ++++ +E
Sbjct: 534 LLEGPSGSGKTALAATIGIDSDFPYVKIVSAE 565
>At4g04180.1 68417.m00593 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 609
Score = 52.8 bits (121), Expect = 2e-07
Identities = 31/96 (32%), Positives = 53/96 (55%), Gaps = 9/96 (9%)
Frame = +2
Query: 497 GRESPDS-TYEMVGGLDKQIKEIKEVIELPVKHPELFDAL--GIA------QPKGVLLYG 649
G +S D +++ + G D+Q +EI++ I + + PE++D + G +P+ VL G
Sbjct: 309 GDDSMDEISWDNIAGYDQQKREIEDTILMALHSPEVYDDIVRGTRSKFESNRPRAVLFEG 368
Query: 650 PPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGE 757
PPGTGKT AR +A+ + V ++ K+ GE
Sbjct: 369 PPGTGKTSCARVIANQAGIPLLYVPLEAVMSKYYGE 404
>At3g04340.1 68416.m00459 FtsH protease family protein similar to
chloroplast FtsH protease [Arabidopsis thaliana]
GI:1483215; contains Pfam profiles PF01434: Peptidase
family M41, PF00004: ATPase AAA family
Length = 960
Score = 49.6 bits (113), Expect = 2e-06
Identities = 25/78 (32%), Positives = 41/78 (52%)
Frame = +2
Query: 503 ESPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLAR 682
++P + ++ +EI EV+ +++P+ F +G P+GVL+ G GTGKT LA
Sbjct: 417 KNPPIPLKNFASIESMREEINEVVAF-LQNPKAFQEMGARAPRGVLIVGERGTGKTSLAL 475
Query: 683 AVAHHTECTFIRVSGSEL 736
A+A + V EL
Sbjct: 476 AIAAEARVPVVNVEAQEL 493
>At3g28580.1 68416.m03568 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 500
Score = 48.0 bits (109), Expect = 7e-06
Identities = 28/94 (29%), Positives = 50/94 (53%)
Frame = +2
Query: 422 RSSQRKLYLTQNTTQQSRSSCVAHDGRESPDSTYEMVGGLDKQIKEIKEVIELPVKHPEL 601
++ +RKLY +S +H E P +T++ + + + +EIK + K +
Sbjct: 173 KNRERKLYSNTPGQSHGNNSKWSHVTFEHP-ATFDTLAMEENKKEEIKSDLIKFSKSKDY 231
Query: 602 FDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTE 703
+ +G A +G LL+GPPGTGK+ + A+A+ E
Sbjct: 232 YKKIGKAWKRGYLLFGPPGTGKSTMIAAMANFLE 265
>At5g17760.2 68418.m02083 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 341
Score = 47.6 bits (108), Expect = 9e-06
Identities = 22/61 (36%), Positives = 38/61 (62%)
Frame = +2
Query: 515 STYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAH 694
ST+E + D +++ E ++ ++ E + +G A +G LLYGPPGTGK+ L A+A+
Sbjct: 216 STFETMAMEDDLKRDVIEDLDRFIRRKEFYKRVGKAWKRGYLLYGPPGTGKSSLVAAMAN 275
Query: 695 H 697
+
Sbjct: 276 Y 276
>At5g17760.1 68418.m02082 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 505
Score = 47.6 bits (108), Expect = 9e-06
Identities = 22/61 (36%), Positives = 38/61 (62%)
Frame = +2
Query: 515 STYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAH 694
ST+E + D +++ E ++ ++ E + +G A +G LLYGPPGTGK+ L A+A+
Sbjct: 216 STFETMAMEDDLKRDVIEDLDRFIRRKEFYKRVGKAWKRGYLLYGPPGTGKSSLVAAMAN 275
Query: 695 H 697
+
Sbjct: 276 Y 276
>At3g50930.1 68416.m05576 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 576
Score = 47.2 bits (107), Expect = 1e-05
Identities = 24/62 (38%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Frame = +2
Query: 515 STYEMVGGLDKQIK-EIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVA 691
ST++ + +D +K + E ++ VK + + +G A +G LLYGPPGTGK+ L A+A
Sbjct: 262 STFKTLA-MDSDVKTSVMEDLDKFVKRRDFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMA 320
Query: 692 HH 697
+H
Sbjct: 321 NH 322
>At1g79560.1 68414.m09275 FtsH protease, putative contains
similarity to chloroplast FtsH protease GI:5804782 from
[Nicotiana tabacum]
Length = 1008
Score = 46.8 bits (106), Expect = 2e-05
Identities = 28/80 (35%), Positives = 45/80 (56%)
Frame = +2
Query: 494 DGRESPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTL 673
D E+ E+V G D + ++ + + + + +P + +A +GVLL GPPGTGKTL
Sbjct: 484 DVSETKSMYKEVVLGGD--VWDLLDELMIYMGNPMQYYEKDVAFVRGVLLSGPPGTGKTL 541
Query: 674 LARAVAHHTECTFIRVSGSE 733
AR +A + F+ SG+E
Sbjct: 542 FARTLAKESGLPFVFASGAE 561
>At3g50940.1 68416.m05577 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 451
Score = 45.6 bits (103), Expect = 4e-05
Identities = 24/62 (38%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Frame = +2
Query: 515 STYEMVGGLDKQIKE-IKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVA 691
ST+ + LD ++K+ + E ++ V+ + +G A +G LLYGPPGTGK+ L A+A
Sbjct: 210 STFRTLA-LDPEVKKNLVEDLDRFVQRKGFYGRVGKAWKRGYLLYGPPGTGKSSLIAAIA 268
Query: 692 HH 697
+H
Sbjct: 269 NH 270
>At2g18193.1 68415.m02117 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 495
Score = 45.2 bits (102), Expect = 5e-05
Identities = 23/61 (37%), Positives = 37/61 (60%)
Frame = +2
Query: 515 STYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAH 694
ST++ + K+I + +E +K E + +G A +G LLYGPPGTGK+ L A+A+
Sbjct: 206 STFDTLAMDPNAKKKIIDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMAN 265
Query: 695 H 697
+
Sbjct: 266 Y 266
>At2g18190.1 68415.m02116 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 494
Score = 44.8 bits (101), Expect = 6e-05
Identities = 24/61 (39%), Positives = 37/61 (60%)
Frame = +2
Query: 515 STYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAH 694
ST+E + K+I + +E +K E + +G A +G LLYGPPGTGK+ L A+A+
Sbjct: 207 STFETLAMDPGAKKKIIDDMERFLKRREFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMAN 266
Query: 695 H 697
+
Sbjct: 267 Y 267
>At1g43910.1 68414.m05066 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 475
Score = 44.0 bits (99), Expect = 1e-04
Identities = 18/37 (48%), Positives = 26/37 (70%)
Frame = +2
Query: 587 KHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHH 697
K + F ++G A +G LLYGPPGTGK+ + A+A+H
Sbjct: 226 KGKDFFKSVGRAWKRGYLLYGPPGTGKSSMVAAIANH 262
>At5g17740.1 68418.m02080 AAA-type ATPase family protein h-bcs1,
Homo sapiens, EMBL:AF026849 h-bcs1, Homo sapiens,
EMBL:AF026849 h-bcs1, Homo sapiens, EMBL:AF026849
contains Pfam profile: ATPase family PF00004
gene_id:K17E7.100 contains Pfam profile: ATPase family
PF00004
Length = 533
Score = 42.3 bits (95), Expect = 3e-04
Identities = 21/61 (34%), Positives = 36/61 (59%)
Frame = +2
Query: 515 STYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAH 694
ST++ + D + + E ++ V + + +G A +G LLYGPPGTGK+ L A+A+
Sbjct: 208 STFDTMAMNDDLKRSMIEDLDRFVGRKDFYKRVGKAWKRGYLLYGPPGTGKSSLVAAMAN 267
Query: 695 H 697
+
Sbjct: 268 Y 268
>At3g28600.1 68416.m03570 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 475
Score = 42.3 bits (95), Expect = 3e-04
Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
Frame = +2
Query: 413 LSCRSSQRKLYLTQNTTQ--QSRSSCVAHDGRESPDSTYEMVGGLDKQIKEIKEVIELPV 586
+ +S Q KL+ ++ S+ S + E P S + + K+ +EI +
Sbjct: 164 IQAKSKQMKLFTNNPSSHWGTSKKSFWRYIDFEHPASFHTLAMDTKKK-EEILNDLAAFS 222
Query: 587 KHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHH 697
E + +G A +G LL+GPPGTGK+ + A+A+H
Sbjct: 223 NGKEYYKKIGKAWKRGYLLHGPPGTGKSTMIAAMANH 259
>At5g40010.1 68418.m04852 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 514
Score = 41.9 bits (94), Expect = 5e-04
Identities = 28/99 (28%), Positives = 52/99 (52%), Gaps = 2/99 (2%)
Frame = +2
Query: 413 LSCRSSQRKLYLTQNTTQQS--RSSCVAHDGRESPDSTYEMVGGLDKQIKEIKEVIELPV 586
+ ++ +RKLY + S + + +H E P +T++ + K+ +EIK +
Sbjct: 171 IEVKNRERKLYSNNPSQNWSGYKQTKWSHVTFEHP-ATFDTLAMEYKKKEEIKNDLIKFS 229
Query: 587 KHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTE 703
+ + +G A +G LL+GPPGTGK+ + A+A+ E
Sbjct: 230 NSKDYYKKIGKAWKRGYLLFGPPGTGKSTMIAAMANLLE 268
>At5g17730.1 68418.m02079 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 470
Score = 41.9 bits (94), Expect = 5e-04
Identities = 18/61 (29%), Positives = 36/61 (59%)
Frame = +2
Query: 515 STYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAH 694
ST++ + ++ + + ++ ++ + + +G +G LLYGPPGTGKT L A+A+
Sbjct: 208 STFDTMAMNEELKRSVMGDLDRFIRRKDFYKRVGKPWKRGYLLYGPPGTGKTSLVAAIAN 267
Query: 695 H 697
+
Sbjct: 268 Y 268
>At4g30250.1 68417.m04301 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 512
Score = 41.5 bits (93), Expect = 6e-04
Identities = 27/92 (29%), Positives = 41/92 (44%)
Frame = +2
Query: 422 RSSQRKLYLTQNTTQQSRSSCVAHDGRESPDSTYEMVGGLDKQIKEIKEVIELPVKHPEL 601
R+ +R LY S R ST++ + ++ K I E +
Sbjct: 170 RNEERLLYTNSRGVSLDARSHPWDSVRFKHPSTFDTLAMDPEKKKRIMEDLREFANGQGF 229
Query: 602 FDALGIAQPKGVLLYGPPGTGKTLLARAVAHH 697
+ G A +G LLYGPPGTGK+ L A+A++
Sbjct: 230 YQKTGRAWKRGYLLYGPPGTGKSSLIAAMANY 261
>At3g28570.1 68416.m03567 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 451
Score = 41.5 bits (93), Expect = 6e-04
Identities = 21/64 (32%), Positives = 37/64 (57%)
Frame = +2
Query: 503 ESPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLAR 682
E P + + +DK+ + ++++ E +D +G A +G LLYGPPGTGK+ +
Sbjct: 196 EHPATFDTLAMDIDKKDEIFRDLVAFR-DGKEYYDRIGKAWKRGYLLYGPPGTGKSTMIA 254
Query: 683 AVAH 694
A+A+
Sbjct: 255 AMAN 258
>At5g17750.1 68418.m02081 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 392
Score = 40.7 bits (91), Expect = 0.001
Identities = 19/61 (31%), Positives = 33/61 (54%)
Frame = +2
Query: 515 STYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAH 694
ST+ + K + E ++ +K + + +G A + LYGPPGTGK+ L A+A+
Sbjct: 183 STFHTMAMTPKLKSSVMEDLDRFIKRKDYYKRVGKAWKRSYFLYGPPGTGKSSLVAAMAN 242
Query: 695 H 697
+
Sbjct: 243 Y 243
>At3g28540.1 68416.m03564 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 510
Score = 40.7 bits (91), Expect = 0.001
Identities = 26/100 (26%), Positives = 52/100 (52%), Gaps = 2/100 (2%)
Frame = +2
Query: 410 QLSCRSSQRKLYLTQNTTQQS--RSSCVAHDGRESPDSTYEMVGGLDKQIKEIKEVIELP 583
++ ++ +RKLY ++ S R ++ + P + + L+K+ K++I+
Sbjct: 166 EIGLKNRERKLYTNNSSQDYSAWREGRWSNVPFDHPATFETLAMDLEKKEGMKKDLIKF- 224
Query: 584 VKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTE 703
K + + +G +G LL+GPPGTGK+ + A+A+ E
Sbjct: 225 TKGKDYYRKVGKPWKRGYLLFGPPGTGKSTMISAMANFLE 264
>At3g28520.1 68416.m03562 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 478
Score = 40.7 bits (91), Expect = 0.001
Identities = 27/100 (27%), Positives = 56/100 (56%), Gaps = 2/100 (2%)
Frame = +2
Query: 410 QLSCRSSQRKLYLTQNTTQQSRS-SCVAHDGRESPDSTYEMVG-GLDKQIKEIKEVIELP 583
+++ ++ +RKLY +++ S + + + +++E +G LDK+ +EIK+ +
Sbjct: 155 EIALKNRERKLYTNNDSSSYSSWWEGLWSNVPFNHHASFETLGMDLDKK-EEIKKDLIKF 213
Query: 584 VKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTE 703
K + + + +G LL+GPPGTGK+ + A+A+ E
Sbjct: 214 TKGKDYYRKVAKPWKRGYLLFGPPGTGKSTMISAIANFLE 253
>At4g05380.1 68417.m00820 AAA-type ATPase family protein contains
similarity to mitochondrial ATPase (AAA family) Bcs1p,
Saccharomyces cerevisiae, Swiss Prot:P32839
Length = 248
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/33 (51%), Positives = 23/33 (69%)
Frame = +2
Query: 596 ELFDALGIAQPKGVLLYGPPGTGKTLLARAVAH 694
+ F +G A +G LLYGPPGTGK+ L A+A+
Sbjct: 21 DFFKTVGRAWKRGYLLYGPPGTGKSSLVAAIAN 53
>At3g28510.1 68416.m03561 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family
Length = 530
Score = 39.5 bits (88), Expect = 0.002
Identities = 31/92 (33%), Positives = 53/92 (57%), Gaps = 4/92 (4%)
Frame = +2
Query: 431 QRKLYLTQNTTQQS---RSSCVAHDGRESPDSTYEMVGGLDKQIKE-IKEVIELPVKHPE 598
+RKLY T N++Q+ RS ++ P +T+E + +D + KE IK+ + K +
Sbjct: 177 ERKLY-TNNSSQEWYPWRSGKWSNVPFHHP-ATFETLA-MDPEKKEGIKKDLIKFSKGKD 233
Query: 599 LFDALGIAQPKGVLLYGPPGTGKTLLARAVAH 694
+ +G +G LL+GPPGTGK+ + A+A+
Sbjct: 234 YYKKVGKPWKRGYLLFGPPGTGKSTMIAAIAN 265
>At3g28610.1 68416.m03571 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 473
Score = 38.7 bits (86), Expect = 0.004
Identities = 25/96 (26%), Positives = 50/96 (52%), Gaps = 2/96 (2%)
Frame = +2
Query: 413 LSCRSSQRKLYLTQNTTQ--QSRSSCVAHDGRESPDSTYEMVGGLDKQIKEIKEVIELPV 586
+ ++ + KL+ ++ S++S + E P +T+E + K+ ++I +
Sbjct: 164 IDAKNKKMKLFTNNPSSHWGSSKTSFWRYIDFEHP-ATFETLAMDPKKKEQILNDLAAFN 222
Query: 587 KHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAH 694
+ + +G A +G LLYGPPGTGK+ + A+A+
Sbjct: 223 NGKDYYKKIGKAWKRGYLLYGPPGTGKSTMIAAMAN 258
>At1g21690.1 68414.m02714 replication factor C 37 kDa, putative
Similar to SWISS-PROT:P35249 activator 1 37 kDa subunit
(Replication factor C 37 kDa subunit, A1 37 kDa subunit,
RF-C 37 kDa subunit, RFC37) [Homo sapiens]; contains
Pfam domain, PF00004: ATPase, AAA family
Length = 339
Score = 38.7 bits (86), Expect = 0.004
Identities = 20/47 (42%), Positives = 26/47 (55%)
Frame = +2
Query: 554 KEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAH 694
K++K+V L + L A +L YGPPGTGKT A A+AH
Sbjct: 18 KQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTALAIAH 64
>At5g57480.1 68418.m07183 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family
Length = 520
Score = 38.3 bits (85), Expect = 0.006
Identities = 19/61 (31%), Positives = 36/61 (59%)
Frame = +2
Query: 515 STYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAH 694
ST+E + ++ ++I + ++ + + G A +G LLYGPPGTGK+ + A+A+
Sbjct: 200 STFETLAMDPRKKQQIMDDLKDFAEGQVFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMAN 259
Query: 695 H 697
+
Sbjct: 260 Y 260
>At5g40000.1 68418.m04851 AAA-type ATPase family protein BCS1
nuclear gene encoding mitochondrial protein - Homo
sapiens, EMBL:AF026849 contains Pfam profile: ATPase
family PF00004
Length = 470
Score = 38.3 bits (85), Expect = 0.006
Identities = 16/33 (48%), Positives = 23/33 (69%)
Frame = +2
Query: 596 ELFDALGIAQPKGVLLYGPPGTGKTLLARAVAH 694
E + +G A +G LLYGPPGTGK+ + A+A+
Sbjct: 231 EYYKKIGKAWKRGYLLYGPPGTGKSTMISAMAN 263
>At5g16930.1 68418.m01984 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 644
Score = 38.3 bits (85), Expect = 0.006
Identities = 14/36 (38%), Positives = 24/36 (66%)
Frame = +2
Query: 629 KGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSEL 736
+ +L YGPPGTGKT+ AR +A + + ++G ++
Sbjct: 399 RNILFYGPPGTGKTMAARELARRSGLDYALMTGGDV 434
>At4g36580.1 68417.m05193 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 620
Score = 38.3 bits (85), Expect = 0.006
Identities = 13/36 (36%), Positives = 25/36 (69%)
Frame = +2
Query: 629 KGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSEL 736
+ ++ YGPPGTGKT++AR +A + + ++G ++
Sbjct: 371 RNMMFYGPPGTGKTMVAREIARKSGLDYAMMTGGDV 406
>At2g18330.1 68415.m02136 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family associated with
various cellular activities (AAA)
Length = 636
Score = 38.3 bits (85), Expect = 0.006
Identities = 13/36 (36%), Positives = 25/36 (69%)
Frame = +2
Query: 629 KGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSEL 736
+ ++ YGPPGTGKT++AR +A + + ++G ++
Sbjct: 386 RNMMFYGPPGTGKTMVAREIARKSGLDYAMMTGGDV 421
>At1g08270.2 68414.m00912 expressed protein low similarity to
SP|P46467 SKD1 protein (Vacuolar sorting protein 4b)
{Mus musculus}
Length = 132
Score = 38.3 bits (85), Expect = 0.006
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +2
Query: 500 RESPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGV 637
RE P+ + +V GL+ + +KE + LPV P+ F A I P+ V
Sbjct: 85 REKPNVKWTVVAGLESAKQALKEAVILPVNFPQFFTARAIYDPRDV 130
>At4g25835.1 68417.m03716 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family
Length = 506
Score = 37.9 bits (84), Expect = 0.007
Identities = 19/61 (31%), Positives = 36/61 (59%)
Frame = +2
Query: 515 STYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAH 694
ST++ + + ++I E ++ + ++ G A +G LLYGPPGTGK+ + A+A+
Sbjct: 200 STFDTLAMDPVKKQQIMEDLKDFAECQSFYERTGRAWKRGYLLYGPPGTGKSSMIAAMAN 259
Query: 695 H 697
+
Sbjct: 260 Y 260
>At5g53350.1 68418.m06630 ATP-dependent Clp protease ATP-binding
subunit ClpX1 (CLPX) identical to CLP protease
regulatory subunit CLPX GI:2674203 from [Arabidopsis
thaliana]
Length = 579
Score = 37.5 bits (83), Expect = 0.010
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +2
Query: 623 QPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQK-FIGEGRE 766
+ +LL GP G+GKTLLA+ +A F+ + L Q ++GE E
Sbjct: 222 EKSNILLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVE 270
>At3g03060.1 68416.m00302 AAA-type ATPase family protein contains a
ATP/GTP-binding site motif A (P-loop), PROSITE:PS00017
Length = 639
Score = 37.5 bits (83), Expect = 0.010
Identities = 14/36 (38%), Positives = 25/36 (69%)
Frame = +2
Query: 629 KGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSEL 736
+ +LL+GPPGTGKT+ AR +A + + ++G ++
Sbjct: 398 RNILLHGPPGTGKTMAARELARKSGLDYALMTGGDV 433
>At5g49840.1 68418.m06172 ATP-dependent Clp protease ATP-binding
subunit ClpX, putative similar to CLP protease
regulatory subunit CLPX GI:2674203 from [Arabidopsis
thaliana]; non-consensus splice donor GC at exon 4;
non-consensus splice donor AA at exon 7
Length = 606
Score = 35.5 bits (78), Expect = 0.039
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2
Query: 635 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQK-FIGEGRE 766
VLL GP G+GKTLLA+ +A F + L Q ++GE E
Sbjct: 265 VLLLGPTGSGKTLLAKTLARIVNVPFAIADATSLTQAGYVGEDVE 309
>At3g05780.1 68416.m00649 Lon protease, putative similar to Lon
protease homolog 2 SP:P93655
Length = 924
Score = 35.5 bits (78), Expect = 0.039
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +2
Query: 614 GIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVS 724
G +Q K + L GPPG GKT + R++A + F R S
Sbjct: 436 GTSQGKIICLSGPPGVGKTSIGRSIARALDRKFFRFS 472
>At2g46620.1 68415.m05815 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 491
Score = 35.5 bits (78), Expect = 0.039
Identities = 18/61 (29%), Positives = 33/61 (54%)
Frame = +2
Query: 557 EIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSEL 736
++K +E +K + ++ LG + LLYGP GTGK+ A+A+ + + S++
Sbjct: 208 KVKSDLESFLKGKQYYNRLGRVWKRSYLLYGPSGTGKSSFVAAMANFLDYDVYDIDLSKV 267
Query: 737 V 739
V
Sbjct: 268 V 268
>At1g33360.1 68414.m04129 ATP-dependent Clp protease ATP-binding
subunit ClpX, putative similar to CLP protease
regulatory subunit CLPX GI:2674203 from [Arabidopsis
thaliana]
Length = 656
Score = 35.5 bits (78), Expect = 0.039
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +2
Query: 635 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQK-FIGEGRE 766
VLL GP G+GKTLLA+ +A F+ + L Q ++G+ E
Sbjct: 311 VLLMGPTGSGKTLLAKTLARLVNVPFVIADATTLTQAGYVGDDVE 355
>At1g21690.2 68414.m02715 replication factor C 37 kDa, putative
Similar to SWISS-PROT:P35249 activator 1 37 kDa subunit
(Replication factor C 37 kDa subunit, A1 37 kDa subunit,
RF-C 37 kDa subunit, RFC37) [Homo sapiens]; contains
Pfam domain, PF00004: ATPase, AAA family
Length = 327
Score = 35.5 bits (78), Expect = 0.039
Identities = 14/20 (70%), Positives = 16/20 (80%)
Frame = +2
Query: 635 VLLYGPPGTGKTLLARAVAH 694
+L YGPPGTGKT A A+AH
Sbjct: 33 MLFYGPPGTGKTTTALAIAH 52
>At4g24710.1 68417.m03536 AAA-type ATPase family protein similar to
HPV16 E1 protein binding protein [Homo sapiens]
gi|2232019|gb|AAB64095; contains Pfam domain, PF00004:
ATPase, AAA family ('A'TPases 'A'ssociated with diverse
cellular 'A'ctivities)
Length = 467
Score = 35.1 bits (77), Expect = 0.052
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 9/50 (18%)
Frame = +2
Query: 635 VLLYGPPGTGKTLLARAVA---------HHTECTFIRVSGSELVQKFIGE 757
+LL+GPPGTGKT L +A+A + C I V+ L K+ E
Sbjct: 205 ILLHGPPGTGKTSLCKALAQKLSIRCNSRYPHCQLIEVNAHSLFSKWFSE 254
>At5g26860.1 68418.m03204 Lon protease homolog 2, mitochondrial
almost identical to Lon protease homolog 2
mitochondrial precursor SP:P93655, GI:1848290 from
[Arabidopsis thaliana]
Length = 940
Score = 34.7 bits (76), Expect = 0.068
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +2
Query: 614 GIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVS 724
G +Q K + L GPPG GKT + R++A F R S
Sbjct: 453 GTSQGKIICLSGPPGVGKTSIGRSIARALNRKFFRFS 489
>At3g30842.1 68416.m03968 ABC transporter protein, putative similar
to pleiotropic drug resistance like protein [Nicotiana
tabacum] GI:20522008, ABC1 protein [Nicotiana
plumbaginifolia] GI:14331118; contains Pfam profile
PF00005: ABC transporter
Length = 1406
Score = 34.3 bits (75), Expect = 0.090
Identities = 20/44 (45%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Frame = +2
Query: 599 LFDALGIAQP-KGVLLYGPPGTGKTLLARAVAHHTECTFIRVSG 727
L D GI +P + LL GPPG+GK+ L +A++ TE T +R +G
Sbjct: 162 LNDVSGIIKPGRLTLLLGPPGSGKSTLLKALSGKTE-TGLRSTG 204
>At2g02480.1 68415.m00187 DNA polymerase-related weak similarity to
DNA polymerase III holoenzyme tau subunit [Thermus
thermophilus] GI:2583049
Length = 1218
Score = 34.3 bits (75), Expect = 0.090
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 5/106 (4%)
Frame = +2
Query: 404 HGQLSCRSSQRKLYLTQNTTQQSRSS--CVAHDGRESPDSTYEMVGGLDKQIKEI--KEV 571
+G+L + R +T+ +S+ VA DG E ST E + ++ + + +E+
Sbjct: 404 YGELDLEAQSRLDGRRWSTSYRSQDGLEAVALDGEEEEGSTPETIRSFSQKYRPMFFEEL 463
Query: 572 IELPVKHPELFDALGIAQPKGVLLY-GPPGTGKTLLARAVAHHTEC 706
I + L +A+ ++ V L+ GP GTGKT AR + C
Sbjct: 464 IGQSIVVQSLMNAVKRSRIAPVYLFQGPRGTGKTSTARIFSAALNC 509
>At1g67120.1 68414.m07636 midasin-related similar to Midasin
(MIDAS-containing protein) (Swiss-Prot:Q12019)
[Saccharomyces cerevisiae]; similar to Midasin
(MIDAS-containing protein) (Swiss-Prot:Q9NU22) [Homo
sapiens]; contains Prosite PS00017: ATP/GTP-binding site
motif A (P-loop)
Length = 5336
Score = 34.3 bits (75), Expect = 0.090
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Frame = +2
Query: 551 IKEIKEVIELPVKHPELFD--ALGIAQPKGVLLYGPPGTGKTLLARAVA 691
+ E E+ + + F+ +L ++Q + VLLYGP G+GK+ L R +A
Sbjct: 326 VNSFSEPFEIHSRVKKSFEMVSLAVSQKRPVLLYGPSGSGKSALIRKLA 374
Score = 33.1 bits (72), Expect = 0.21
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Frame = +2
Query: 473 RSSCVAHDGRESPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQ-PKGVLLYG 649
+S V H+G D + G + +I + + P H + L Q K +LL G
Sbjct: 1695 KSKSVRHEGMFGIDPFFISKGDENPEIGGFEFLA--PTTHRNVLRVLRAMQLSKPILLEG 1752
Query: 650 PPGTGKTLLARAVAHHTECTFIRVSGSE 733
PG GKT L A+ ++ +R++ SE
Sbjct: 1753 SPGVGKTSLILALGKYSGHKVVRINLSE 1780
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Frame = +2
Query: 635 VLLYGPPGTGKTLLARAVAHHTECTFIRVSGSEL--VQKFIG 754
VLL GP +GKT L + +A + F+R++ E +Q+++G
Sbjct: 1075 VLLQGPTSSGKTSLVKYLAAISGNKFVRINNHEQTDIQEYLG 1116
>At4g14670.1 68417.m02255 heat shock protein 101, putative / HSP101,
putative similar to heat shock protein 101 GI:6715468
GB:AAF26423 from [Arabidopsis thaliana]
Length = 623
Score = 33.9 bits (74), Expect = 0.12
Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 7/86 (8%)
Frame = +2
Query: 512 DSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIA---QPKGVLLY-GPPGTGKTLLA 679
D +E V G D+ +K + I L +G+ QP G L+ GP G GKT LA
Sbjct: 530 DKLHERVVGQDEAVKAVAAAI--------LRSRVGLGRPQQPSGSFLFLGPTGVGKTELA 581
Query: 680 RAVAHH---TECTFIRVSGSELVQKF 748
+A+A +E +R+ SE KF
Sbjct: 582 KALAEQLFDSENLLVRLDMSEYNDKF 607
>At5g22330.1 68418.m02605 TATA box-binding protein-interacting
protein-related similar to TATA box-binding
protein-interacting protein SP:O35753 from [ Mus
musculus]
Length = 458
Score = 33.5 bits (73), Expect = 0.16
Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Frame = +2
Query: 629 KGVLLYGPPGTGKTLLARAVAHH--TECTFIRVSGSEL 736
K +LL GPPGTGKT LA ++ ++ F + GSE+
Sbjct: 67 KALLLAGPPGTGKTALALGISQELGSKVPFCPMVGSEV 104
>At3g51570.1 68416.m05648 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1226
Score = 33.1 bits (72), Expect = 0.21
Identities = 20/61 (32%), Positives = 32/61 (52%)
Frame = +2
Query: 536 GLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFI 715
GL ++++E+KE ++L + + LG+ G PG GKT LAR + C F+
Sbjct: 211 GLKQRLEELKEKLDLDCEETRI---LGVV--------GMPGIGKTTLAREIYETLRCKFL 259
Query: 716 R 718
R
Sbjct: 260 R 260
>At2g36380.1 68415.m04464 ABC transporter family protein related to
multi drug resistance proteins and P-glycoproteins
Length = 1453
Score = 32.7 bits (71), Expect = 0.28
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Frame = +2
Query: 515 STYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGV-LLYGPPGTGKTLLARAVA 691
+T E + GL + K IE+ L D GI +P + LL GPP +GKT L +A+A
Sbjct: 167 NTIESILGLFHLLPSKKRKIEI------LKDISGIIKPSRMTLLLGPPSSGKTTLLQALA 220
Query: 692 HHTECTFIRVSG 727
+ T +++SG
Sbjct: 221 GKLDDT-LQMSG 231
>At3g05790.1 68416.m00650 Lon protease, putative similar to Lon
protease homolog 2 SP:P93655
Length = 942
Score = 32.3 bits (70), Expect = 0.36
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +2
Query: 614 GIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVS 724
G +Q K + L GP G GKT + R++A + F R S
Sbjct: 445 GTSQGKIICLSGPTGVGKTSIGRSIARALDRKFFRFS 481
>At2g37280.1 68415.m04573 ABC transporter family protein similar to
PDR5-like ABC transporter GI:1514643 from [Spirodela
polyrhiza]
Length = 1413
Score = 32.3 bits (70), Expect = 0.36
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 599 LFDALGIAQP-KGVLLYGPPGTGKTLLARAVAHHTE 703
L D GI P + LL GPPG GKT L +A++ + E
Sbjct: 155 LTDVSGIISPGRLTLLLGPPGCGKTTLLKALSGNLE 190
>At1g08270.1 68414.m00913 expressed protein low similarity to
SP|P46467 SKD1 protein (Vacuolar sorting protein 4b)
{Mus musculus}
Length = 126
Score = 32.3 bits (70), Expect = 0.36
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +2
Query: 500 RESPDSTYEMVGGLDKQIKEIKEVIELPVKHPELF 604
RE P+ + +V GL+ + +KE + LPV P+ F
Sbjct: 85 REKPNVKWTVVAGLESAKQALKEAVILPVNFPQFF 119
>At5g67630.1 68418.m08527 DNA helicase, putative similar to
RuvB-like DNA helicase reptin [Danio rerio] GI:27733814,
reptin [Drosophila melanogaster] GI:7243682
Length = 469
Score = 31.9 bits (69), Expect = 0.48
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = +2
Query: 629 KGVLLYGPPGTGKTLLARAVAHH--TECTFIRVSGSEL 736
+ +L+ G PGTGKT +A +A E F ++GSE+
Sbjct: 67 RAILIAGQPGTGKTAIAMGMAKSLGLETPFAMIAGSEI 104
>At5g47010.1 68418.m05794 RNA helicase, putative similar to type 1
RNA helicase pNORF1 [Homo sapiens] GI:1885356
Length = 1254
Score = 31.9 bits (69), Expect = 0.48
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +2
Query: 638 LLYGPPGTGKTLLARAVAHH 697
L+ GPPGTGKT+ + A+ +H
Sbjct: 507 LIQGPPGTGKTVTSAAIVYH 526
>At1g77470.1 68414.m09021 replication factor C 36 kDA, putative
similar to SWISS-PROT:P40937 activator 1 36 kDa subunit
(Replication factor C 36 kDa subunit, A1 36 kDa subunit,
RF-C 36 kDa subunit, RFC36) [Homo sapiens]
Length = 369
Score = 31.9 bits (69), Expect = 0.48
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = +2
Query: 635 VLLYGPPGTGKTLLARAVA 691
+LLYGPPGTGKT AVA
Sbjct: 75 LLLYGPPGTGKTSTILAVA 93
>At1g66950.1 68414.m07612 ABC transporter family protein similar to
PDR5-like ABC transporter GI:1514643 from [Spirodela
polyrhiza]
Length = 1454
Score = 31.9 bits (69), Expect = 0.48
Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Frame = +2
Query: 599 LFDALGIAQPKGV-LLYGPPGTGKTLLARAVAHHTECTFIRVSG 727
L D GI +P + LL GPP +GKT L +A+A + T +++SG
Sbjct: 191 LKDISGIVKPSRMTLLLGPPSSGKTTLLQALAGKLDDT-LQMSG 233
>At1g15520.1 68414.m01867 ABC transporter family protein similar to
ABC1 protein GI:14331118 from [Nicotiana
plumbaginifolia]
Length = 1423
Score = 31.9 bits (69), Expect = 0.48
Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = +2
Query: 497 GRESPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPPGTGKTL 673
GR P + DK + + V K L D GI +P + LL GPP +GKT
Sbjct: 136 GRALPTFVNFISNFADKFLNTLHLVPNRKKKFTILNDVSGIVKPGRMALLLGPPSSGKTT 195
Query: 674 LARAVA 691
L A+A
Sbjct: 196 LLLALA 201
>At2g25140.1 68415.m03007 heat shock protein 100, putative / HSP100,
putative / heat shock protein clpB, putative /
HSP100/ClpB, putative similar to HSP100/ClpB GI:9651530
[Phaseolus lunatus]
Length = 964
Score = 31.5 bits (68), Expect = 0.64
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Frame = +2
Query: 638 LLYGPPGTGKTLLARAVA---HHTECTFIRVSGSELVQK 745
+ GP G GKT LA+A+A +TE +RV SE ++K
Sbjct: 687 MFMGPTGVGKTELAKALAGYLFNTENAIVRVDMSEYMEK 725
>At5g15450.1 68418.m01808 heat shock protein 100, putative / HSP100,
putative / heat shock protein clpB, putative /
HSP100/ClpB, putative similar to HSP100/ClpB GI:9651530
[Phaseolus lunatus]
Length = 968
Score = 31.1 bits (67), Expect = 0.84
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Frame = +2
Query: 638 LLYGPPGTGKTLLARAVAHH---TECTFIRVSGSELVQK 745
+ GP G GKT LA+A+A + TE +R+ SE ++K
Sbjct: 682 MFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEK 720
>At1g14460.1 68414.m01715 DNA polymerase-related weak similarity to
DNA polymerase III holoenzyme tau subunit [Thermus
thermophilus] GI:2583049
Length = 1116
Score = 31.1 bits (67), Expect = 0.84
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 7/87 (8%)
Frame = +2
Query: 476 SSCVAHDGR----ESPDSTYEMVGGLDKQIKEI--KEVIELPVKHPELFDALGIAQPKGV 637
S C + DG E ST E + L ++ K + E+I + L +A+ + V
Sbjct: 399 SCCKSQDGEREEEEEGGSTPESIQSLSQKYKPMFFDELIGQSIVVQSLMNAVKKGRVAHV 458
Query: 638 LLY-GPPGTGKTLLARAVAHHTECTFI 715
L+ GP GTGKT AR ++ C +
Sbjct: 459 YLFQGPRGTGKTSTARILSAALNCDVV 485
>At1g04730.1 68414.m00469 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 954
Score = 31.1 bits (67), Expect = 0.84
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +2
Query: 614 GIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSE 733
G + K +LL G PG GKT LA A H + ++ S+
Sbjct: 341 GPPEQKILLLCGAPGLGKTTLAHIAAKHCGYRVVEINASD 380
>At2g16870.1 68415.m01941 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1109
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/61 (31%), Positives = 36/61 (59%)
Frame = +2
Query: 506 SPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARA 685
+P S ++ + G++ +KE++ +++ FD G+ K V ++GP G GKT +ARA
Sbjct: 177 TPSSDFDGMVGIEAHLKEMEVLLD--------FDYDGV---KIVGIFGPAGIGKTTIARA 225
Query: 686 V 688
+
Sbjct: 226 L 226
>At1g74310.1 68414.m08605 heat shock protein 101 (HSP101) identical
to heat shock protein 101 GI:6715468 GB:AAF26423 from
[Arabidopsis thaliana]
Length = 911
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Frame = +2
Query: 623 QPKGVLLY-GPPGTGKTLLARAVAHH---TECTFIRVSGSELVQK 745
QP G L+ GP G GKT LA+A+A E +R+ SE +++
Sbjct: 597 QPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQ 641
>At4g15215.1 68417.m02332 ABC transporter family protein similar to
PDR5-like ABC transporter [Spirodela polyrhiza]
GI:1514643; contains Pfam profile PF00005: ABC
transporter
Length = 1390
Score = 30.3 bits (65), Expect = 1.5
Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Frame = +2
Query: 476 SSCVAHDGRESPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGP 652
+ C G+ P + G L K + KE K L GI +P + LL GP
Sbjct: 118 AECQVVHGKPIPTLWNTIKGSLSKFVCSKKET-----KIGILKGVSGIVRPGRMTLLLGP 172
Query: 653 PGTGKTLLARAVA 691
PG GKT L +A++
Sbjct: 173 PGCGKTTLLQALS 185
>At3g49830.1 68416.m05448 DNA helicase-related similar to DNA
helicase GI:4521249 from [Mus musculus]
Length = 473
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +2
Query: 629 KGVLLYGPPGTGKTLLARAVAHH--TECTFIRVSGSEL 736
+ +L+ G PGTGK +A +A E F ++GSE+
Sbjct: 67 RAILIAGQPGTGKIAIAMGIAKSLGQETPFTMIAGSEI 104
>At1g63750.1 68414.m07214 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1131
Score = 30.3 bits (65), Expect = 1.5
Identities = 20/68 (29%), Positives = 36/68 (52%)
Frame = +2
Query: 485 VAHDGRESPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTG 664
V++ +P +E + GL+ +K+I+ ++ L K L +GI+ GP G G
Sbjct: 176 VSYKLNATPSKDFEDMMGLEAHLKKIQSLLRLDYKDEALI--IGIS--------GPAGIG 225
Query: 665 KTLLARAV 688
K+ +ARA+
Sbjct: 226 KSTIARAL 233
>At5g46470.1 68418.m05723 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1127
Score = 29.9 bits (64), Expect = 1.9
Identities = 18/69 (26%), Positives = 33/69 (47%)
Frame = +2
Query: 506 SPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARA 685
SP + +E + G++ I ++ ++ L + + V ++GP G GKT +ARA
Sbjct: 179 SPSNDFEDLVGIEDHITKMSSLLHLESEEVRM-----------VGIWGPSGIGKTTIARA 227
Query: 686 VAHHTECTF 712
+ C F
Sbjct: 228 LFSRLSCQF 236
>At4g15236.1 68417.m02335 ABC transporter family protein similar to
pleiotropic drug resistance like protein [Nicotiana
tabacum] GI:20522008, ABC1 protein [Nicotiana
plumbaginifolia] GI:14331118; contains Pfam profile
PF00005: ABC transporter
Length = 1388
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/27 (55%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = +2
Query: 614 GIAQPKGV-LLYGPPGTGKTLLARAVA 691
GI +PK + LL GPPG GKT L A++
Sbjct: 157 GIIRPKRMTLLLGPPGCGKTTLLLALS 183
>At3g29800.1 68416.m03792 AAA-type ATPase family contains Pfam
profile: ATPase family PF00004
Length = 440
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/61 (26%), Positives = 32/61 (52%)
Frame = +2
Query: 515 STYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAH 694
S++E + + + + + I+L + + + +G + LL+G PG GKT L A+A
Sbjct: 162 SSFETIVMKEDLKRRLIDDIDLFISKEDFYKRVGRHWMRYYLLHGLPGAGKTSLVAAIAK 221
Query: 695 H 697
+
Sbjct: 222 Y 222
>At2g29940.1 68415.m03642 ABC transporter family protein similar to
ABC1 protein GI:14331118 from [Nicotiana
plumbaginifolia]
Length = 1426
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = +2
Query: 599 LFDALGIAQP-KGVLLYGPPGTGKTLLARAVA 691
L D GI +P + LL GPPG+GK+ L A+A
Sbjct: 176 LKDISGIIKPGRMTLLLGPPGSGKSTLLLALA 207
>At2g17060.1 68415.m01970 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1195
Score = 29.9 bits (64), Expect = 1.9
Identities = 21/70 (30%), Positives = 35/70 (50%)
Frame = +2
Query: 509 PDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAV 688
P++ E+VG L +++KE+KE ++L K + LG+ PG GKT L + +
Sbjct: 214 PENQIELVG-LSQRLKELKEKLDLSRKETRIVGVLGM-----------PGIGKTTLVKRL 261
Query: 689 AHHTECTFIR 718
+ F R
Sbjct: 262 YDEWKHNFQR 271
>At1g60700.1 68414.m06833 forkhead-associated domain-containing
protein / FHA domain-containing protein contains
similarity to nucleolar protein GI:2384719 from [Mus
musculus]
Length = 525
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +3
Query: 372 DLDKNVDINDVTANCRVALRNES-YTLHKILPNKVDPL 482
DLD N DI D + R LR ES + ++ N DPL
Sbjct: 64 DLDNNADIGDGDEDIRNCLRPESDFWFKNLMDNPYDPL 101
>At1g15210.1 68414.m01818 ABC transporter family protein Similar to
gb|Z70524 GI:1514643 PDR5-like ABC transporter from
Spirodela polyrrhiza and is a member of the PF|00005 ABC
transporter family. ESTs gb|N97039 and gb|T43169 come
from this gene
Length = 1442
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +2
Query: 599 LFDALGIAQPKGV-LLYGPPGTGKTLLARAVA 691
L D GI +P + LL GPP +GKT L A+A
Sbjct: 185 LKDVSGIVKPSRMTLLLGPPSSGKTTLLLALA 216
>At5g63200.1 68418.m07935 tetratricopeptide repeat (TPR)-containing
protein low similarity to SP|P28290 Sperm-specific
antigen 2 (Cleavage signal-1 protein) (CS-1) Homo
sapiens; contains Pfam profile PF00515: TPR Domain
Length = 649
Score = 29.5 bits (63), Expect = 2.6
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = +2
Query: 464 QQSRSSCVAHDGRESPDSTYEMVGG-LDKQIKEIKEVIELPVKHPELFDALGIAQPKGVL 640
Q C+ DG DS E+ G L++ + ++K+ I+L V+ +++ LG+ K
Sbjct: 187 QIHHGQCLLLDGFGDTDSVKELEGEELEEILSKLKDSIKLDVRQAAVWNTLGLMLLKAGC 246
Query: 641 LYGPPGTGKTLLA 679
L +LLA
Sbjct: 247 LMSAISVLSSLLA 259
>At5g47040.1 68418.m05797 Lon protease homolog 1, mitochondrial
(LON) identical to Lon protease homolog 1 mitochondrial
precursor SP:O64948 from [Arabidopsis thaliana]
Length = 888
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +2
Query: 647 GPPGTGKTLLARAVAHHTECTFIRVS 724
GPPG GKT LA ++A F+R+S
Sbjct: 408 GPPGVGKTSLASSIAAALGRKFVRLS 433
>At4g15570.1 68417.m02379 tRNA-splicing endonuclease positive
effector-related contains similarity to SEN1, a positive
effector of tRNA-splicing endonuclease [Saccharomyces
cerevisiae] gi|172574|gb|AAB63976
Length = 818
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +2
Query: 611 LGIAQPKGVLLYGPPGTGKT 670
+G+++ VL+ GPPGTGKT
Sbjct: 268 VGLSRKSFVLIQGPPGTGKT 287
>At4g15230.1 68417.m02333 ABC transporter family protein similar to
pleiotropic drug resistance like protein [Nicotiana
tabacum] GI:20522008, PDR5-like ABC transporter
[Spirodela polyrhiza] GI:1514643; contains Pfam profile
PF00005: ABC transporter
Length = 1326
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = +2
Query: 614 GIAQP-KGVLLYGPPGTGKTLLARAVA 691
GI +P + LL GPPG GKT L +A++
Sbjct: 162 GIVRPGRMTLLLGPPGCGKTTLLQALS 188
>At3g16340.1 68416.m02066 ABC transporter family protein similar to
PDR5-like ABC transporter GI:1514643 from [Spirodela
polyrhiza]; contains Pfam profile: PF00005 ABC
transporter
Length = 1416
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +2
Query: 599 LFDALGIAQPKGV-LLYGPPGTGKTLLARAVA 691
L D GI +P + LL GPP +GKT L A+A
Sbjct: 163 LRDVSGIIKPSRMTLLLGPPSSGKTTLLLALA 194
>At1g63160.1 68414.m07138 replication factor C 40 kDa, putative
similar to SWISS-PROT:Q9WUK4 activator 1 40 kDa subunit
(Replication factor C 40 kDa subunit, A1 40 kDa subunit,
RF-C 40 kDa subunit, RFC40) [Mus musculus]
Length = 333
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +2
Query: 635 VLLYGPPGTGKTLLARAVAH 694
++L GPPGTGKT A+AH
Sbjct: 51 LILSGPPGTGKTTSILALAH 70
>At1g59870.1 68414.m06745 ABC transporter family protein similar to
PDR5-like ABC transporter GI:1514643 from [Spirodela
polyrhiza]
Length = 1469
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +2
Query: 599 LFDALGIAQP-KGVLLYGPPGTGKTLLARAVAHHTECTFIRVSG 727
L D G+ +P + LL GPP +GKT L A+A + + ++VSG
Sbjct: 187 LKDISGVIKPGRMTLLLGPPSSGKTTLLLALAGKLDKS-LQVSG 229
>At4g30490.1 68417.m04329 AFG1-like ATPase family protein contains
Pfam profile: PF03969 AFG1-like ATPase
Length = 497
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +2
Query: 629 KGVLLYGPPGTGKTLLARAVAHHTECTF 712
KG+ LYG GTGKT+L CT+
Sbjct: 162 KGLYLYGGVGTGKTMLMDLFFDQLPCTW 189
>At3g53480.1 68416.m05904 ABC transporter family protein PDR5-like
ABC transporter, Spirodela polyrrhiza, EMBL:Z70524
Length = 1450
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +2
Query: 605 DALGIAQP-KGVLLYGPPGTGKTLLARAVAHHTE 703
D GI +P + LL GPP GKT L +A++ + E
Sbjct: 192 DVNGIIKPGRLTLLLGPPSCGKTTLLKALSGNLE 225
>At1g73170.1 68414.m08466 expressed protein
Length = 666
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +2
Query: 635 VLLYGPPGTGKTLLARAVA 691
+LL GPPG GKT + R VA
Sbjct: 200 LLLIGPPGVGKTTMIREVA 218
>At1g24290.1 68414.m03065 AAA-type ATPase family protein similar to
Werner helicase interacting protein [Homo sapiens]
GI:14349166; contains Pfam profiles PF00004: ATPase
family associated with various cellular activities
(AAA), PF00627: UBA/TS-N domain; contains
ATP/GTP-binding site motif A (P-loop)
Length = 525
Score = 29.1 bits (62), Expect = 3.4
Identities = 9/23 (39%), Positives = 19/23 (82%)
Frame = +2
Query: 635 VLLYGPPGTGKTLLARAVAHHTE 703
++ +GPPGTGKT +A+++ + ++
Sbjct: 140 IVFWGPPGTGKTSIAKSLINSSK 162
>At5g17890.1 68418.m02098 LIM domain-containing protein / disease
resistance protein-related low similarity to disease
resistance protein RPP4 [Arabidopsis thaliana]
GI:20270890; contains Pfam profiles PF00412: LIM domain,
PF00931: NB-ARC domain, PF00560: Leucine Rich Repeat
Length = 1613
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +2
Query: 629 KGVLLYGPPGTGKTLLARAVAHH 697
+ + ++G PG GKT LA+AV +H
Sbjct: 190 RSIGIWGMPGIGKTTLAKAVFNH 212
>At5g11710.1 68418.m01368 epsin N-terminal homology (ENTH)
domain-containing protein / clathrin assembly
protein-related contains Pfam PF01417: ENTH domain. ENTH
(Epsin N-terminal homology) domain; similar to
Af10-protein (GI:1724114) [Avena fatua]; similar to
clathrin assembly protein AP180 (GI:6492344) [Xenopus
laevis]; Af10-protein, Avena fatua, EMBL:U80041
Length = 560
Score = 28.7 bits (61), Expect = 4.5
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Frame = +2
Query: 542 DKQIKEIKEVIELPV-KHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIR 718
D+ ++EIK + L V K PE+ + A +GP GT +A+A +EC +
Sbjct: 8 DQTVREIKREVNLKVLKVPEMEQKVLDATDNEP--WGPHGTALAEIAQATKKFSECQMVM 65
Query: 719 VSGSELVQKFIGEGREW 769
S L + G++W
Sbjct: 66 ---SVLWTRLSETGKDW 79
>At5g11250.1 68418.m01314 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1189
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2
Query: 641 LYGPPGTGKTLLARAVAHHTECTF 712
++GPPG GKT +AR V + +F
Sbjct: 262 IWGPPGIGKTTIARVVYNQLSHSF 285
>At3g24530.1 68416.m03080 AAA-type ATPase family protein / ankyrin
repeat family protein contains Pfam profiles: PF00023
ankyrin repeat, PF00004 ATPase family associated with
various cellular activities (AAA)
Length = 481
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 611 LGIAQPKGVLLYGPPGTGKTLLARAV 688
+G +P + G PGTGKT++AR +
Sbjct: 240 IGTRRPPHMAFLGNPGTGKTMVARVL 265
>At5g35970.1 68418.m04332 DNA-binding protein, putative similar to
SWISS-PROT:Q60560 DNA-binding protein SMUBP-2
(Immunoglobulin MU binding protein 2, SMUBP-2)
[Mesocricetus auratus]
Length = 961
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/28 (46%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = +2
Query: 608 ALGIAQPKGVLLY-GPPGTGKTLLARAV 688
ALG+ + + V++ GPPGTGKT + + V
Sbjct: 496 ALGVNKKRPVMIVQGPPGTGKTGMLKEV 523
>At4g26090.1 68417.m03756 disease resistance protein RPS2
(CC-NBS-LRR class), putative domain signature CC-NBS-LRR
exists, suggestive of a disease resistance protein.
identical to RPS2 (gi:13661831)
Length = 909
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +2
Query: 560 IKEVIELPVKHPELFDALGIAQPKGVL-LYGPPGTGKTLLARAV 688
IK V+ ++ + L + +G++ +YGP G GKT L +++
Sbjct: 152 IKSVVGNTTMMEQVLEFLSEEEERGIIGVYGPGGVGKTTLMQSI 195
>At3g04220.1 68416.m00446 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 896
Score = 28.3 bits (60), Expect = 5.9
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +2
Query: 629 KGVLLYGPPGTGKTLLARAV 688
K + ++GPPG GKT +AR++
Sbjct: 259 KTIGIWGPPGVGKTTIARSL 278
>At1g63880.1 68414.m07234 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1017
Score = 28.3 bits (60), Expect = 5.9
Identities = 18/61 (29%), Positives = 34/61 (55%)
Frame = +2
Query: 506 SPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARA 685
+P ++ + G++ ++EIK +++L D + + K V + GP G GKT +ARA
Sbjct: 179 TPSRDFDGMVGIEAHLREIKSLLDL--------DNVEV---KIVAIAGPAGIGKTTIARA 227
Query: 686 V 688
+
Sbjct: 228 L 228
>At1g06720.1 68414.m00714 expressed protein contains Pfam domain,
PF04950: Protein of unknown function (DUF663)
Length = 1147
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +2
Query: 593 PELFDALGIAQPKGVLLYGPPGTGKTLLARAV 688
P++ G A P V++ GPPG GK+L+ +++
Sbjct: 72 PKIDRNYGEAPPFVVVVQGPPGVGKSLVIKSL 103
>At5g58120.1 68418.m07272 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1046
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 641 LYGPPGTGKTLLARAVAHHTECTF 712
+YGP G GKT +ARA+ +F
Sbjct: 215 IYGPAGIGKTTIARALHSRLSSSF 238
>At5g22010.1 68418.m02561 AAA-type ATPase family protein / BRCT
domain-containing protein contains Pfam profiles:
PF00533 BRCA1 C Terminus (BRCT) domain, PF00004 ATPase
family associated with various cellular activities (AAA)
Length = 956
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 629 KGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSE 733
K VLL G PG GKT A+ V+ + V+ S+
Sbjct: 394 KAVLLSGTPGIGKTTSAKLVSQMLGFQAVEVNASD 428
>At4g38870.1 68417.m05504 F-box family protein contains Pfam
profile: PF00646 F-box domain
Length = 426
Score = 27.9 bits (59), Expect = 7.9
Identities = 24/98 (24%), Positives = 46/98 (46%)
Frame = +1
Query: 175 SSLSPKNLKIFVVFKPSVMNSTLKFVCYARSFSSCKNRDRTSEKWLNQWIKRRSS*KFIL 354
S L P +L I + K + ++F+C ++ ++S + +LN+ +KR S F+
Sbjct: 50 SELLPVDL-IMEILKKLSLKPLIRFLCVSKLWASIIRDPYFMKLFLNESLKRPKSLVFVF 108
Query: 355 KVNSSSI*TRTLILTMSRPIVVSLFATKAIPYTKYYPT 468
+ S ++ L +R I S ++ A T Y+ T
Sbjct: 109 RAQSLGSIFSSVHLKSTREISSSSSSSSASSIT-YHVT 145
>At4g28070.1 68417.m04026 AFG1-like ATPase family protein contains
Pfam profile: PF03969 AFG1-like ATPase
Length = 464
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 617 IAQPKGVLLYGPPGTGKTLLARAVAH 694
++ KG+ LYG GTGKT+L H
Sbjct: 130 VSPVKGLYLYGGVGTGKTMLMDLFFH 155
>At1g79050.1 68414.m09217 DNA repair protein recA identical to DNA
repair protein recA, chloroplast [Precursor] SP:Q39199
from [Arabidopsis thaliana] ;contains Pfam profile:
PF00154 recA bacterial DNA recombination protein
Length = 439
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/26 (57%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Frame = +2
Query: 608 ALGIAQPKG--VLLYGPPGTGKTLLA 679
ALG PKG V +YGP +GKT LA
Sbjct: 127 ALGGGLPKGRVVEIYGPESSGKTTLA 152
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,722,262
Number of Sequences: 28952
Number of extensions: 314044
Number of successful extensions: 1306
Number of sequences better than 10.0: 150
Number of HSP's better than 10.0 without gapping: 1216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1291
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1716774400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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