Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00016
(703 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0302 + 16501020-16501049,16501568-16501659,16502063-165021... 31 0.67
06_03_1510 + 30665857-30666038,30666137-30666236,30666358-306664... 30 1.5
10_06_0060 + 10184165-10185002,10185084-10185167,10185262-10186334 30 2.0
07_03_0635 + 20151861-20152249,20152589-20152709,20154914-201549... 30 2.0
08_02_1033 - 23813410-23813525,23813895-23814343,23815677-238159... 29 2.7
06_01_0102 + 834660-834911,835460-835568,835891-836006,836116-83... 29 2.7
05_06_0237 + 26618195-26618425,26618518-26618640,26619569-266197... 29 3.6
07_01_0183 + 1297445-1297796,1297896-1298424,1298548-1298630,129... 29 4.7
05_01_0214 - 1615519-1616775 29 4.7
04_04_1150 + 31278367-31278885,31280065-31281278,31281759-31283355 29 4.7
04_01_0439 + 5740472-5740836,5743693-5743939 29 4.7
10_08_0553 - 18720436-18720494,18721102-18721106,18721136-187212... 28 6.2
07_03_1772 + 29411874-29413218,29413355-29413421,29413749-294138... 28 6.2
03_05_0845 - 28155065-28155374,28156201-28156342,28156375-281565... 28 6.2
01_06_1367 - 36711738-36711774,36711962-36712686,36713217-367132... 28 6.2
04_04_0020 + 22182649-22182829,22183900-22183999,22184415-221844... 28 8.3
03_05_1080 + 30229828-30230707,30230861-30231110,30231265-30231499 28 8.3
02_05_0512 + 29675835-29675901,29676681-29676813,29677020-296771... 28 8.3
02_03_0074 + 14781763-14784191,14784888-14784978,14785180-147852... 28 8.3
>09_04_0302 +
16501020-16501049,16501568-16501659,16502063-16502198,
16502297-16502727,16502950-16503028
Length = 255
Score = 31.5 bits (68), Expect = 0.67
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = -1
Query: 406 VRDSSNYSVEIHKHHYAQGQFQCHQHQHEDRVG 308
V SS+ S+E H +HY G H HQ D VG
Sbjct: 117 VGSSSSDSLEHHSNHYCNGGHHHHGHQCYDSVG 149
>06_03_1510 +
30665857-30666038,30666137-30666236,30666358-30666438,
30666514-30666618,30666722-30666916,30667440-30667501,
30667870-30667885,30668007-30668068,30668933-30668951
Length = 273
Score = 30.3 bits (65), Expect = 1.5
Identities = 19/54 (35%), Positives = 24/54 (44%)
Frame = +2
Query: 215 AGGLYDCWGHRFHLAFFGCCGAIRESNCMLVTYAIFMLVLMALKLTLGVMVFVN 376
A GL+ C L GC A S C L Y I +V+M L+ L +F N
Sbjct: 68 AAGLFYCL-----LLLAGCVAAEINSPCFLCFYTILAVVMMLLEAALAADLFFN 116
>10_06_0060 + 10184165-10185002,10185084-10185167,10185262-10186334
Length = 664
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +1
Query: 292 QLHACHLRDL-HAGVDGTETDLGRNGVCESRRSSCCYPELD 411
+L+AC L AG + T GR G +S CCYP D
Sbjct: 147 RLYACEDSSLCRAGCEDVAT-CGRGGAAAGAKSGCCYPLSD 186
>07_03_0635 +
20151861-20152249,20152589-20152709,20154914-20154996,
20155819-20155903,20155987-20156277,20156555-20156645,
20157380-20158280,20158401-20158561,20158759-20158862,
20159040-20159205,20159283-20159378,20159694-20159800,
20160443-20160775,20161393-20161599,20161774-20161857,
20162887-20163020,20163166-20163393,20163541-20163712,
20164301-20164555,20164647-20164919
Length = 1426
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +2
Query: 236 WGHRFHLAFFGCCGAIRESNCMLVTYAIFMLVLMAL 343
W H+ LA F GAI S + T+ +F+L+L+ L
Sbjct: 664 WTHQMALALFRLLGAILRSMVVANTFGMFVLLLIFL 699
>08_02_1033 -
23813410-23813525,23813895-23814343,23815677-23815990,
23817021-23817809
Length = 555
Score = 29.5 bits (63), Expect = 2.7
Identities = 18/48 (37%), Positives = 25/48 (52%)
Frame = -1
Query: 304 KHAVALPDGTAASEECKMKAMPPTIIQATGATLKLVSDSTVSMSANCK 161
+ + L G A SE C AMP T +A G L +V ++S+SA K
Sbjct: 199 RSTLGLSYGLAISEACIAPAMPSTTARAGGVFLPIV--KSLSLSAGSK 244
>06_01_0102 +
834660-834911,835460-835568,835891-836006,836116-836235,
836398-836436,836678-836811,837035-837299,837615-837698,
837943-838003,838748-838810,839174-839216,839632-839711,
839831-840267
Length = 600
Score = 29.5 bits (63), Expect = 2.7
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Frame = -2
Query: 360 TPKVSFSAINTSMKIA*VTSMQ----LLSLMAPQHPKNAR*KRCP 238
TP+VS S++ +SMKI ++S Q LL L P + N + CP
Sbjct: 292 TPQVSDSSVPSSMKIEDLSSNQQDIYLLPLRTPDNSTNFEYRTCP 336
>05_06_0237 +
26618195-26618425,26618518-26618640,26619569-26619736,
26619824-26621497
Length = 731
Score = 29.1 bits (62), Expect = 3.6
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +3
Query: 201 SFRVAPVA-CMIVGGIAFILHSSDAAVPSGRATACLSPTRSSCW 329
SF VA A +VGG+ F L S +P RA CL P W
Sbjct: 17 SFLVAAAAGAALVGGVYFWLVVSSFRLPDSRAVGCL-PDGEGSW 59
>07_01_0183 +
1297445-1297796,1297896-1298424,1298548-1298630,
1298901-1298989,1299091-1299164,1300196-1300246,
1300439-1300515,1302199-1302863
Length = 639
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/48 (33%), Positives = 21/48 (43%)
Frame = -1
Query: 409 PVRDSSNYSVEIHKHHYAQGQFQCHQHQHEDRVGDKHAVALPDGTAAS 266
P SS H HH+ Q Q Q Q QH + +H + P T A+
Sbjct: 25 PHMASSTMDEHHHVHHHQQQQQQQQQQQHHQQ--QQHGLFFPSVTTAA 70
>05_01_0214 - 1615519-1616775
Length = 418
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -1
Query: 373 HKHHYAQGQFQCHQHQHEDRVGDKHAVAL 287
H HH+ + Q H H HED G+ V L
Sbjct: 207 HDHHHHEDQEHGHVHHHEDGHGNSITVNL 235
>04_04_1150 + 31278367-31278885,31280065-31281278,31281759-31283355
Length = 1109
Score = 28.7 bits (61), Expect = 4.7
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -1
Query: 373 HKHHYAQGQFQCHQHQHEDRVGDK 302
H+HH+ Q Q H HQ + R G +
Sbjct: 139 HRHHHHQRQRHHHHHQRQQRRGSR 162
>04_01_0439 + 5740472-5740836,5743693-5743939
Length = 203
Score = 28.7 bits (61), Expect = 4.7
Identities = 26/76 (34%), Positives = 29/76 (38%), Gaps = 12/76 (15%)
Frame = -2
Query: 669 SEDDGHQFNGGDHD--GD-----RADSNAIVIEECLQDFGA-----AGVRVDYRTGGRRA 526
+ D GH NGGD D GD R S A Q A G VD GG RA
Sbjct: 39 ANDGGHATNGGDRDEGGDGRGKRRRASRATAAVRRTQQMAATEPNDGGHAVDVADGGDRA 98
Query: 525 ARIGQGKDRYEPGPVG 478
R+ + R P G
Sbjct: 99 GRLAVWRTRLRRRPRG 114
>10_08_0553 -
18720436-18720494,18721102-18721106,18721136-18721257,
18721390-18721478,18722136-18722316,18722403-18722654,
18722755-18722993,18723680-18723914,18724072-18724132,
18724632-18724987
Length = 532
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/68 (25%), Positives = 28/68 (41%)
Frame = -1
Query: 373 HKHHYAQGQFQCHQHQHEDRVGDKHAVALPDGTAASEECKMKAMPPTIIQATGATLKLVS 194
H HH AQ Q HQHQ + + +++ + ++ A + T A L+ V
Sbjct: 61 HYHHQAQ---QLHQHQQQQQHAQRNSSSQQQQWLRRDQATAAAASGEVAARTAAQLEAVD 117
Query: 193 DSTVSMSA 170
S+ A
Sbjct: 118 SSSEDWKA 125
>07_03_1772 + 29411874-29413218,29413355-29413421,29413749-29413896,
29415293-29415416,29416340-29416590,29416923-29418449,
29418786-29418896,29419576-29419734,29419827-29421734
Length = 1879
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = +1
Query: 433 PRYVPCHRA*IQLLWSNGSGLVPILALPNTCCSTTPCTV 549
P+ +P R + LW N +G + + + N+ ST C +
Sbjct: 1296 PKLLPHQRKALDFLWKNLAGSIQVEGMDNSNVSTGGCVI 1334
>03_05_0845 -
28155065-28155374,28156201-28156342,28156375-28156505,
28156591-28156784,28156859-28156969,28157234-28157399,
28157501-28157668,28157766-28158787
Length = 747
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = -2
Query: 642 GGDHDGDRADSNAIVIEECLQDFGAAGVRVDYRTGGRRAARIGQGK 505
GG +DG+ AD+ A V+E+ L + YR G A G+GK
Sbjct: 16 GGGYDGEEADAGAAVVEKALPNGDV------YRGGFAGGAPHGKGK 55
>01_06_1367 -
36711738-36711774,36711962-36712686,36713217-36713284,
36714043-36714157
Length = 314
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/39 (38%), Positives = 17/39 (43%)
Frame = +2
Query: 122 GRSRSAGPRIGGSFTIR*HRDCAVRDQLQSSAGGLYDCW 238
GR S GSF R H A RDQL+ G + W
Sbjct: 165 GRMESCNCSYPGSFFCRQHHTDAARDQLRCELGRAFTEW 203
>04_04_0020 +
22182649-22182829,22183900-22183999,22184415-22184491,
22184718-22184809,22188655-22189767
Length = 520
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = -1
Query: 373 HKHHYAQGQFQCHQHQHEDRVGDKHAVALPDGTAASEE 260
H+HH + H HE+ + A A DG +S+E
Sbjct: 474 HRHHPQPPPSRPHYQYHENNIAVAAAAAASDGEQSSDE 511
>03_05_1080 + 30229828-30230707,30230861-30231110,30231265-30231499
Length = 454
Score = 27.9 bits (59), Expect = 8.3
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = -2
Query: 645 NGGDHDGDRADSNAIVIEECLQDFGAAG-VRVDYRTGGRRAARIGQGKDRYEPGPVGPQQ 469
NGG D AD N + + LQ+ G G VR R G +G G R + P G ++
Sbjct: 267 NGGAADDQNADENLVDVLIALQEKGGFGHVR---RRDGDVGVGVGVGDVRADAEPGGDEE 323
Query: 468 L 466
+
Sbjct: 324 V 324
>02_05_0512 +
29675835-29675901,29676681-29676813,29677020-29677164,
29677586-29678407
Length = 388
Score = 27.9 bits (59), Expect = 8.3
Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = -2
Query: 663 DDGHQFNGGDHDGDRA-DSNAIVIEECLQDFGAAGVRVDYRTGGRRAARIGQGKDRYEPG 487
D GH+ +GGD +G+ D A V + L+D A VD R A +G G DR G
Sbjct: 242 DGGHRDDGGDGEGEGVDDGGAAVADVVLEDKELATGVVD----AARVA-VGHGGDR---G 293
Query: 486 PVG 478
P G
Sbjct: 294 PGG 296
>02_03_0074 +
14781763-14784191,14784888-14784978,14785180-14785230,
14785882-14785947,14786509-14786610
Length = 912
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/37 (29%), Positives = 17/37 (45%)
Frame = -1
Query: 373 HKHHYAQGQFQCHQHQHEDRVGDKHAVALPDGTAASE 263
H HH++Q Q H H G + ++P A+E
Sbjct: 156 HPHHHSQPQQPQSHHHHHHHSGSRKRHSMPPAYTAAE 192
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,320,222
Number of Sequences: 37544
Number of extensions: 431148
Number of successful extensions: 1373
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1369
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -