Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00016
         (703 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    59   5e-11
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   2.8  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   2.8  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   2.8  
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    23   3.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.5  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   6.5  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   8.6  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 58.8 bits (136), Expect = 5e-11
 Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
 Frame = +2

Query: 248 FHLAFFGCCGAIRESNCMLVTYAIFMLVLMALKLTLGVMVFV------NLDGVVAAIPNW 409
           F ++FFGCCGAIRES+CM +T+A F+L ++ +++ + V  F+      N   +       
Sbjct: 63  FVISFFGCCGAIRESHCMTITFASFLLFILLVQIAVAVYAFIVVKNDDNFRNISEKYQEI 122

Query: 410 MNKTF--QQDQDTFHVIEHRFSCCGPTGPGSYLSLP 511
            N  F   + +D    I+    CCG      Y   P
Sbjct: 123 FNGYFLNSESKDFIDFIQKNLQCCGVHSLSDYNDKP 158


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
 Frame = -1

Query: 298 AVALPDGTAAS----EECKMKAMPPTIIQATGA 212
           A+  PDG  A     E C +   PP +I ++GA
Sbjct: 609 ALICPDGGRAEINEWERCNLGLEPPRVILSSGA 641


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
 Frame = -1

Query: 298 AVALPDGTAAS----EECKMKAMPPTIIQATGA 212
           A+  PDG  A     E C +   PP +I ++GA
Sbjct: 609 ALICPDGGRAEINEWERCNLGLEPPRVILSSGA 641


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
 Frame = -1

Query: 298 AVALPDGTAAS----EECKMKAMPPTIIQATGA 212
           A+  PDG  A     E C +   PP +I ++GA
Sbjct: 609 ALICPDGGRAEINEWERCNLGLEPPRVILSSGA 641


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 265 RMLRCHQGEQLHACHL 312
           R LR H GE+ +AC L
Sbjct: 55  RHLRVHTGERPYACEL 70


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -2

Query: 672 QSEDDGHQFNGGDHDGDRAD 613
           +  DDG   N GD    RAD
Sbjct: 194 RDSDDGSDGNDGDESSCRAD 213


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -3

Query: 368 TPLRPRSVSVPSTP 327
           TPL+PR  S+ S+P
Sbjct: 892 TPLQPRFYSISSSP 905


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 530 EQHVLGRARIGTSPDPL 480
           E H  G A++G S DP+
Sbjct: 542 ENHQTGTAKMGPSYDPM 558


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,946
Number of Sequences: 438
Number of extensions: 3452
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)