Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00016
         (703 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g56580.2 68416.m06292 zinc finger (C3HC4-type RING finger) fa...    30   1.3  
At3g56580.1 68416.m06291 zinc finger (C3HC4-type RING finger) fa...    30   1.3  
At5g55020.1 68418.m06853 myb family transcription factor (MYB120...    29   2.3  
At1g32400.2 68414.m03998 senescence-associated family protein co...    29   3.0  
At1g32400.1 68414.m03997 senescence-associated family protein co...    29   3.0  
At4g37590.1 68417.m05320 phototropic-responsive NPH3 family prot...    25   3.5  
At4g35070.1 68417.m04978 expressed protein                             29   3.9  
At1g49330.1 68414.m05529 hydroxyproline-rich glycoprotein family...    29   3.9  
At5g13150.1 68418.m01506 exocyst subunit EXO70 family protein le...    27   9.1  
At1g27740.1 68414.m03390 basic helix-loop-helix (bHLH) family pr...    27   9.1  

>At3g56580.2 68416.m06292 zinc finger (C3HC4-type RING finger)
           family protein contains INTERPRO domain, IPR001841, RING
           finger
          Length = 320

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
 Frame = -1

Query: 403 RDSSNYSV--EIHKHHYAQGQFQCHQHQHEDR 314
           RD++N +   E H HH+ Q Q Q HQHQH+ +
Sbjct: 277 RDTNNTATAEEGHYHHHQQQQQQ-HQHQHQQQ 307


>At3g56580.1 68416.m06291 zinc finger (C3HC4-type RING finger)
           family protein contains INTERPRO domain, IPR001841, RING
           finger
          Length = 320

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
 Frame = -1

Query: 403 RDSSNYSV--EIHKHHYAQGQFQCHQHQHEDR 314
           RD++N +   E H HH+ Q Q Q HQHQH+ +
Sbjct: 277 RDTNNTATAEEGHYHHHQQQQQQ-HQHQHQQQ 307


>At5g55020.1 68418.m06853 myb family transcription factor (MYB120)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain
          Length = 523

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 17/76 (22%), Positives = 30/76 (39%), Gaps = 1/76 (1%)
 Frame = -1

Query: 433 VLLEGL-VHPVRDSSNYSVEIHKHHYAQGQFQCHQHQHEDRVGDKHAVALPDGTAASEEC 257
           +L +GL ++P     N+ +  H HH  Q Q   H H H+ +   +     P  +  +   
Sbjct: 129 LLRQGLPLYPPDIIPNHQLHPHPHHQQQQQHNHHHHHHQQQQQHQQMYFQPQSSQRNTPS 188

Query: 256 KMKAMPPTIIQATGAT 209
                 PT   A  ++
Sbjct: 189 SSPLPSPTPANAKSSS 204


>At1g32400.2 68414.m03998 senescence-associated family protein
           contains Pfam profile PF00335: Tetraspanin family
          Length = 280

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = +2

Query: 248 FHLAFFGCCGAIRESNCMLVTYAIFMLVLMALKLTLGVMVF 370
           F ++  GC G    S C L  Y++ +++L+ ++L     +F
Sbjct: 93  FVISCCGCVGTCSRSVCCLSCYSLLLILLILVELGFAAFIF 133


>At1g32400.1 68414.m03997 senescence-associated family protein
           contains Pfam profile PF00335: Tetraspanin family
          Length = 280

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = +2

Query: 248 FHLAFFGCCGAIRESNCMLVTYAIFMLVLMALKLTLGVMVF 370
           F ++  GC G    S C L  Y++ +++L+ ++L     +F
Sbjct: 93  FVISCCGCVGTCSRSVCCLSCYSLLLILLILVELGFAAFIF 133


>At4g37590.1 68417.m05320 phototropic-responsive NPH3 family protein
           contains NPH3 family domain, Pfam:PF03000
          Length = 580

 Score = 25.0 bits (52), Expect(2) = 3.5
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -1

Query: 343 QCHQHQHEDRVGDKHAVALPDGTAASEEC 257
           Q H H HED +       +P G A+ E C
Sbjct: 70  QIHHHHHEDEI---EIAEIPGGPASFEIC 95



 Score = 22.2 bits (45), Expect(2) = 3.5
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 427 LEGLVHPVRDSSNYSVEIHKHHY 359
           L+ L+     SSN   +IH HH+
Sbjct: 54  LQKLITTSTSSSNEENQIHHHHH 76


>At4g35070.1 68417.m04978 expressed protein 
          Length = 265

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -2

Query: 678 EAQSEDDGHQFNGGDHDGDRADSNAIVIEECLQDFGAAGV 559
           EA+ ED+G  F GG+ DG+   +  + +  C  + G+ GV
Sbjct: 187 EAEVEDEG-SFCGGEGDGNSLPAKKMKMSSCCCNCGSNGV 225


>At1g49330.1 68414.m05529 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 331

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +2

Query: 398 IPNWMNKTFQQDQDTFHVIEHRFSCCGPTGPGSYLSLP 511
           IP WM+  FQQ  +   ++ H F   G   P S L+ P
Sbjct: 104 IPLWMSNYFQQTPNPPQLVTHFFPPSGLAPPSSNLTPP 141


>At5g13150.1 68418.m01506 exocyst subunit EXO70 family protein
           leucine zipper-containing protein - Lycopersicon
           esculentum, EMBL:Z12127 contains Pfam domain PF03081:
           Exo70 exocyst complex subunit;
          Length = 653

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -1

Query: 367 HHYAQGQFQCHQHQHEDRVGDKHAVALPDGTAASE 263
           HH+A    + H H+ ED    +H+  L   T  S+
Sbjct: 7   HHHANESSENHDHKSEDHENKQHSDELHSSTPESQ 41


>At1g27740.1 68414.m03390 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 258

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/21 (57%), Positives = 13/21 (61%), Gaps = 2/21 (9%)
 Frame = -1

Query: 337 HQHQHEDRV--GDKHAVALPD 281
           HQHQH + V   D HA  LPD
Sbjct: 45  HQHQHHNNVLSSDHHAFLLPD 65


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,716,450
Number of Sequences: 28952
Number of extensions: 309012
Number of successful extensions: 922
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 913
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)