Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00015
         (612 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   6.2  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   6.2  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   6.2  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    21   8.2  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    21   8.2  

>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 259 HRFATKQPRPTQSIF 215
           HRFAT  P  T+ ++
Sbjct: 5   HRFATGSPEETEPLY 19


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 259 HRFATKQPRPTQSIF 215
           HRFAT  P  T+ ++
Sbjct: 5   HRFATGSPEETEPLY 19


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +1

Query: 544 NIKVRSDGMRPYVACDLKKKKKK 612
           ++ +R + + P V C +K+K+KK
Sbjct: 250 SVGMRPECVVPEVQCAVKRKEKK 272


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +1

Query: 22  GSYPPKIEIQSYTTPPEDAPSGMMARGSY 108
           G+  P+I+ Q    PP  +P   + + SY
Sbjct: 104 GNLSPQIQTQVARPPPARSPYEWIKKTSY 132


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +1

Query: 22  GSYPPKIEIQSYTTPPEDAPSGMMARGSY 108
           G+  P+I+ Q    PP  +P   + + SY
Sbjct: 104 GNLSPQIQTQVARPPPARSPYEWIKKTSY 132


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,739
Number of Sequences: 336
Number of extensions: 3076
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15561709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)