Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00015
         (612 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.06 |||Rho GDP dissociation inhibitor Rdi1 |Schizosaccha...    76   4e-15
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom...    27   2.1  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    26   4.9  
SPCC1795.10c |||Sed5 Vesicle Protein Svp26 |Schizosaccharomyces ...    26   4.9  

>SPAC6F12.06 |||Rho GDP dissociation inhibitor Rdi1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 205

 Score = 76.2 bits (179), Expect = 4e-15
 Identities = 30/64 (46%), Positives = 43/64 (67%)
 Frame = +1

Query: 1   DKMTHMVGSYPPKIEIQSYTTPPEDAPSGMMARGSYSVNSLFTDDDKNVHLQWEWSFEIK 180
           DK + M+GSY P      +T+ P++AP+GM+ARG Y  N  F DDDK VH ++ W+F++ 
Sbjct: 142 DKTSTMIGSYGPSETPYDFTSEPDEAPTGMLARGHYEANGKFVDDDKVVHHEFVWAFDVA 201

Query: 181 KDWK 192
           K WK
Sbjct: 202 KSWK 205


>SPBC354.13 |rga6||GTPase activating protein
           Rga6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 733

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -1

Query: 273 VLNASTDSQPNSHVQPSRSSNVKP 202
           V++A+TDS+P++   P   +N KP
Sbjct: 663 VISAATDSKPSTRTSPPFVNNTKP 686


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1888

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 99   RLVQRQQPLHRRRQERPPPVGVE 167
            R+V R QPLH R+  R  P  ++
Sbjct: 1068 RIVSRLQPLHSRQYTRESPFSIK 1090


>SPCC1795.10c |||Sed5 Vesicle Protein Svp26 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 227

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 230 WTWLFGCESVLAFKTN*NTFPFYSF 304
           W   F   S   +K N +TFPF+SF
Sbjct: 68  WLSAFSIFSHYIYKINFDTFPFFSF 92


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,518,731
Number of Sequences: 5004
Number of extensions: 49799
Number of successful extensions: 145
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)