Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00015
(612 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0132 - 12166009-12166089,12166197-12166321,12166489-121667... 73 2e-13
02_05_0539 + 29846439-29846711,29846819-29846885,29847832-298480... 68 5e-12
01_06_1776 - 39815634-39815714,39815761-39815927,39816278-398164... 46 2e-05
07_01_0817 + 6533316-6533849,6533996-6534064,6534528-6534767,653... 29 2.2
04_01_0229 - 2897484-2900402 29 2.2
02_01_0321 - 2162015-2162134,2162763-2162846,2162931-2163011,216... 28 5.1
11_01_0315 - 2347254-2347345,2347485-2347895,2348182-2349633,234... 27 8.9
10_06_0029 + 9822216-9823124,9825210-9825329,9826188-9826304,982... 27 8.9
03_05_1124 + 30559633-30559674,30559781-30559890,30559973-305600... 27 8.9
>06_02_0132 -
12166009-12166089,12166197-12166321,12166489-12166710,
12168194-12168260,12168424-12168741
Length = 270
Score = 72.9 bits (171), Expect = 2e-13
Identities = 28/63 (44%), Positives = 44/63 (69%)
Frame = +1
Query: 1 DKMTHMVGSYPPKIEIQSYTTPPEDAPSGMMARGSYSVNSLFTDDDKNVHLQWEWSFEIK 180
DK M+G++ P++E +Y TP E PSG+ ARGSYS + F DDD+ +L+ ++F+I+
Sbjct: 204 DKTKEMLGTFSPQLEPYTYVTPEETTPSGVFARGSYSAKTKFVDDDRKCYLEINYTFDIR 263
Query: 181 KDW 189
+DW
Sbjct: 264 RDW 266
>02_05_0539 +
29846439-29846711,29846819-29846885,29847832-29848050,
29848200-29848324,29848423-29848503
Length = 254
Score = 68.1 bits (159), Expect = 5e-12
Identities = 27/63 (42%), Positives = 42/63 (66%)
Frame = +1
Query: 1 DKMTHMVGSYPPKIEIQSYTTPPEDAPSGMMARGSYSVNSLFTDDDKNVHLQWEWSFEIK 180
D M+G++ P+ E +Y TP E PSGM ARGSYS + F DDD+ +L+ ++F+I+
Sbjct: 188 DSHKEMLGTFSPQPEPYTYVTPEETTPSGMFARGSYSARTKFLDDDRKCYLEINYTFDIR 247
Query: 181 KDW 189
++W
Sbjct: 248 REW 250
>01_06_1776 -
39815634-39815714,39815761-39815927,39816278-39816496,
39816614-39816680,39816771-39816932
Length = 231
Score = 46.0 bits (104), Expect = 2e-05
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 14/72 (19%)
Frame = +1
Query: 16 MVGSYPPKIEIQSYTTPPEDAPSGMMARGSYS--------------VNSLFTDDDKNVHL 153
M+G++ P++E +Y E P+GM ARGSYS V F DDD +L
Sbjct: 156 MLGTFSPQLEPYTYEGEEETTPAGMFARGSYSAKLKVFKLIKFSSDVLIEFVDDDGKCYL 215
Query: 154 QWEWSFEIKKDW 189
+ + FEI+K+W
Sbjct: 216 EMSYYFEIRKEW 227
>07_01_0817 +
6533316-6533849,6533996-6534064,6534528-6534767,
6537747-6537965,6538041-6538133,6538231-6538332,
6538415-6538858
Length = 566
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +3
Query: 123 LHRRRQERPPPVGVELRNQEGLERLSLALHSKIDWVG 233
L + RQ+ P GV L EGL+ +L L +ID +G
Sbjct: 250 LTQSRQQHPAAEGVSLGTTEGLQAKTLRLLLEIDQIG 286
>04_01_0229 - 2897484-2900402
Length = 972
Score = 29.5 bits (63), Expect = 2.2
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = +3
Query: 135 RQERPPPVGVELRNQEGLERLSLALHSKIDWVGRGCLVANRCSRLKQIKIL 287
+QE PP V V +R + E L L HS+ + V + LV + ++ K I L
Sbjct: 192 KQEEPPEVPVIIRYRRAPEDLLLYAHSQFE-VCKSALVDSSSAKAKNISYL 241
>02_01_0321 -
2162015-2162134,2162763-2162846,2162931-2163011,
2163690-2163867,2163946-2164089,2164194-2164240,
2164520-2164576,2165286-2165408,2165496-2165618,
2165959-2166072,2166169-2166176,2166272-2166458,
2174597-2174763,2174924-2175008,2176632-2176820,
2177727-2177918,2178434-2178634
Length = 699
Score = 28.3 bits (60), Expect = 5.1
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +3
Query: 84 RDDGARLVQRQQPLHRRRQERPPPVGVEL-RNQEGLERLSLA 206
R+ L++ QQ H+RR+ R PPV +L +E E +++A
Sbjct: 57 RESADLLMRMQQNKHQRRRYRIPPVNNKLGEKEEVTEEIAMA 98
>11_01_0315 -
2347254-2347345,2347485-2347895,2348182-2349633,
2349688-2350045,2350818-2351177,2351321-2351419,
2351856-2351948,2352078-2352215,2352389-2352476,
2352682-2352770,2353113-2353178,2353370-2353481,
2354702-2354901
Length = 1185
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Frame = +3
Query: 60 NAPRGCA-VRDDGARLVQRQQPLHRRRQERPPPVGVELRNQEGLERLSLALH 212
++PRG + G R+ + P HR + PPP GV + + LH
Sbjct: 448 SSPRGRRRIEGSGRRIEPPRPPSHRGFRPSPPPPGVAYNSPPLARHIGRRLH 499
>10_06_0029 +
9822216-9823124,9825210-9825329,9826188-9826304,
9826387-9826476,9826706-9826756
Length = 428
Score = 27.5 bits (58), Expect = 8.9
Identities = 19/62 (30%), Positives = 24/62 (38%), Gaps = 4/62 (6%)
Frame = +3
Query: 45 DSVLHNAPRGCAVRDDGARLVQRQQPLHRRR----QERPPPVGVELRNQEGLERLSLALH 212
+S ++ PR A R A R +P RRR ERP P L +LH
Sbjct: 95 ESFVYETPRAAAPRRAPAAAAARPRPTTRRRGEAENERPSPPPASKATDALARSLDCSLH 154
Query: 213 SK 218
K
Sbjct: 155 RK 156
>03_05_1124 + 30559633-30559674,30559781-30559890,30559973-30560030,
30560455-30560718,30560803-30560940,30561264-30561315,
30561525-30561604,30561929-30561988,30562084-30562164,
30562299-30562376,30563548-30563676,30563896-30564039,
30564145-30564290,30564402-30564558,30564657-30564715,
30564800-30564959,30565054-30565203,30565309-30565445,
30565531-30565677,30565995-30566052,30566417-30566518,
30566590-30566627,30566846-30566972,30567053-30567223,
30567313-30567444,30567575-30567681,30567815-30567875,
30567970-30568147,30568245-30568450,30568781-30568879,
30569021-30569236,30569333-30569472,30569559-30569660,
30569747-30569861,30570129-30570194,30570323-30570480,
30570594-30570690,30570931-30571137,30571435-30571505,
30571648-30571747,30571836-30571892,30571969-30572025,
30572108-30572188,30572319-30572401,30572504-30572651
Length = 1722
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -3
Query: 604 FFFLNHKPHKAACHLTEPLCFNLSIVYIY 518
F L+ K HK +T+ LC LSI IY
Sbjct: 1599 FLVLHQKTHKTLEEITDELCPVLSITQIY 1627
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,297,975
Number of Sequences: 37544
Number of extensions: 314746
Number of successful extensions: 838
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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