Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00015
         (612 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42593| Best HMM Match : Rho_GDI (HMM E-Value=3.7e-17)               93   1e-19
SB_5737| Best HMM Match : DED (HMM E-Value=2.9e-18)                    29   2.2  
SB_51056| Best HMM Match : Neur_chan_LBD (HMM E-Value=4.3e-24)         29   3.9  
SB_19615| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_42876| Best HMM Match : PSK (HMM E-Value=5.4)                       28   5.2  
SB_38432| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.2  
SB_15991| Best HMM Match : SCP (HMM E-Value=2.3e-23)                   28   6.9  
SB_58489| Best HMM Match : Ank (HMM E-Value=4.7e-08)                   27   9.1  

>SB_42593| Best HMM Match : Rho_GDI (HMM E-Value=3.7e-17)
          Length = 339

 Score = 93.5 bits (222), Expect = 1e-19
 Identities = 39/63 (61%), Positives = 46/63 (73%)
 Frame = +1

Query: 4   KMTHMVGSYPPKIEIQSYTTPPEDAPSGMMARGSYSVNSLFTDDDKNVHLQWEWSFEIKK 183
           K + MVGSY PK E   Y TP ++AP GMMARG Y + S F DDDKN HL+WEW+ EIKK
Sbjct: 277 KDSFMVGSYGPKFEPHEYLTPIDEAPKGMMARGKYIIRSKFIDDDKNSHLEWEWAIEIKK 336

Query: 184 DWK 192
           DW+
Sbjct: 337 DWQ 339


>SB_5737| Best HMM Match : DED (HMM E-Value=2.9e-18)
          Length = 1719

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 17/35 (48%), Positives = 21/35 (60%)
 Frame = +1

Query: 220 STGLDVAVWLRIGARV*NKLKYFSILFVSPFNRSR 324
           S+GLD+AVW     R  +KLKY + L V   N SR
Sbjct: 291 SSGLDIAVWALNNCRR-SKLKYKATLIVRNTNPSR 324


>SB_51056| Best HMM Match : Neur_chan_LBD (HMM E-Value=4.3e-24)
          Length = 373

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +1

Query: 61  TPPEDAPSGMMARGSYSVNSLFTDDDKNVHLQWEWSFEIK 180
           +PP  +PSG  A+    + + + ++D+   L+ EW F  K
Sbjct: 324 SPPRVSPSGTSAKFEKFILNQYREEDRKELLKEEWKFASK 363


>SB_19615| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1376

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +3

Query: 84  RDDGARLVQRQQPLHRRRQERPPPVGVELRNQEGLERLSL 203
           +++GA  + R+Q L   R   PPP+G    + +  ++LS+
Sbjct: 589 QEEGADTLSREQQLKPTRSAPPPPMGTRSSSPKPKDKLSV 628


>SB_42876| Best HMM Match : PSK (HMM E-Value=5.4)
          Length = 151

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = -3

Query: 283 ILICFKREHRFATKQPRPTQSIFECKAKL 197
           I++CF + +  A  +P P +S+ +C A +
Sbjct: 23  IMLCFSKRNSQAPARPSPNESLRQCSASI 51


>SB_38432| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 601

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +1

Query: 16  MVGSYPPKIEIQSYTTPPEDAPSGMMARGSYSVNSLF 126
           ++ SY   I      TPPE A SGM + G Y+ +  +
Sbjct: 543 VINSYGQYITTAREQTPPEMAASGMASSGQYTSSGTY 579


>SB_15991| Best HMM Match : SCP (HMM E-Value=2.3e-23)
          Length = 1189

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = -1

Query: 501 HLATMN--ERDQLIWIGQNVFFFFKSHPH*SVRSNLRNNVYVS*ANLDF 361
           HLA+++  ERD L   G+N+F+ +  +P  +    +R N Y    N DF
Sbjct: 380 HLASIDQMERDPLTNGGENIFYMYGGNPREACERAVR-NWYQEVKNYDF 427


>SB_58489| Best HMM Match : Ank (HMM E-Value=4.7e-08)
          Length = 1188

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = -1

Query: 273 VLNASTDSQPNSHVQPSRSSNVKPSLVFPVLLD 175
           VL ++ +    S+V+P  +SNV+P LV P LL+
Sbjct: 501 VLVSNVEPVLASNVEPVLASNVEPVLVSPALLN 533


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,572,708
Number of Sequences: 59808
Number of extensions: 359710
Number of successful extensions: 756
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)