Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00015
         (612 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g07880.1 68416.m00963 Rho GDP-dissociation inhibitor family p...    69   3e-12
At1g62450.1 68414.m07046 Rho GDP-dissociation inhibitor family p...    63   1e-10
At1g12070.1 68414.m01393 Rho GDP-dissociation inhibitor family p...    61   5e-10
At5g61190.1 68418.m07676 zinc finger protein-related contains Pf...    27   7.4  
At4g24580.1 68417.m03522 pleckstrin homology (PH) domain-contain...    27   9.8  

>At3g07880.1 68416.m00963 Rho GDP-dissociation inhibitor family
           protein similar to SP|P52565 Rho GDP-dissociation
           inhibitor 1 (Rho GDI 1) (Rho-GDI alpha) {Homo sapiens};
           contains Pfam profile PF02115: RHO protein GDP
           dissociation inhibitor
          Length = 240

 Score = 68.5 bits (160), Expect = 3e-12
 Identities = 27/63 (42%), Positives = 42/63 (66%)
 Frame = +1

Query: 1   DKMTHMVGSYPPKIEIQSYTTPPEDAPSGMMARGSYSVNSLFTDDDKNVHLQWEWSFEIK 180
           D+   M+G++ P++E  ++  P E  PSGM ARGSYS  + F DDD   +L+  +SF+I+
Sbjct: 175 DRAKEMLGTFSPQLEPYNHVMPEETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIR 234

Query: 181 KDW 189
           K+W
Sbjct: 235 KEW 237


>At1g62450.1 68414.m07046 Rho GDP-dissociation inhibitor family
           protein similar to SP|P52565 Rho GDP-dissociation
           inhibitor 1 (Rho GDI 1) (Rho-GDI alpha) {Homo sapiens};
           contains Pfam profile PF02115: RHO protein GDP
           dissociation inhibitor
          Length = 223

 Score = 63.3 bits (147), Expect = 1e-10
 Identities = 26/64 (40%), Positives = 39/64 (60%)
 Frame = +1

Query: 1   DKMTHMVGSYPPKIEIQSYTTPPEDAPSGMMARGSYSVNSLFTDDDKNVHLQWEWSFEIK 180
           D    M+G++ P+ E   +  P E  PSGM ARGSYS  + F DDD   +L+  ++F+I+
Sbjct: 160 DSTKAMLGTFSPQAESYQHVMPEEMTPSGMFARGSYSARTKFIDDDNKCYLEINYTFDIR 219

Query: 181 KDWK 192
           K W+
Sbjct: 220 KSWQ 223


>At1g12070.1 68414.m01393 Rho GDP-dissociation inhibitor family
           protein similar to SP|P52565 Rho GDP-dissociation
           inhibitor 1 (Rho GDI 1) (Rho-GDI alpha) {Homo sapiens};
           contains Pfam profile PF02115: RHO protein GDP
           dissociation inhibitor
          Length = 223

 Score = 61.3 bits (142), Expect = 5e-10
 Identities = 25/58 (43%), Positives = 40/58 (68%)
 Frame = +1

Query: 16  MVGSYPPKIEIQSYTTPPEDAPSGMMARGSYSVNSLFTDDDKNVHLQWEWSFEIKKDW 189
           M+G++ P+ E  ++    E APSG++ RGSYSV S F DDD   +L+  ++F+I+K+W
Sbjct: 165 MLGTFSPQAEPYTHVMFEETAPSGLLVRGSYSVKSKFVDDDNQCYLENNYTFDIRKNW 222


>At5g61190.1 68418.m07676 zinc finger protein-related contains Pfam
            profile PF04396: Protein of unknown function DUF537, weak
            hit to PF00096: Zinc finger C2H2 type
          Length = 977

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
 Frame = +3

Query: 21   RLLSPQN*DSVLHNAPRGCA-VRDDGARL---VQRQQPLHRRRQERPPPVGVELRNQEG 185
            R+ + QN +S + N PRGC  V  +  +L   V   + L   ++ +P P   E  N+ G
Sbjct: 888  RVFTEQNRESRIPNEPRGCLDVIPERVKLPPNVNVAKNLEDEQKHKPEPKAQEAENKSG 946


>At4g24580.1 68417.m03522 pleckstrin homology (PH) domain-containing
           protein-related / RhoGAP domain-containing protein
           contains Pfam domain, PF00620: RhoGAP domain
          Length = 902

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 267 NASTDSQPNSHVQPSRSSNVKPSL 196
           NA + SQP  HVQP++    +P +
Sbjct: 5   NAESSSQPPPHVQPNQQQQQQPPI 28


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,158,322
Number of Sequences: 28952
Number of extensions: 256306
Number of successful extensions: 632
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 632
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1226538000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)