Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00014
         (781 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5GF28 Cluster: Putative uncharacterized protein; n=1; ...    34   3.5  
UniRef50_Q8THZ0 Cluster: Hydrogenase-3, subunit C; n=2; Methanos...    33   8.0  

>UniRef50_Q5GF28 Cluster: Putative uncharacterized protein; n=1;
           Diachasmimorpha longicaudata entomopoxvirus|Rep:
           Putative uncharacterized protein - Diachasmimorpha
           longicaudata entomopoxvirus
          Length = 302

 Score = 34.3 bits (75), Expect = 3.5
 Identities = 24/70 (34%), Positives = 36/70 (51%)
 Frame = -3

Query: 761 KGDTVTSYSLNTRTITLLIKYIPLMNIYIDASRVPLQILTGIERIKKIFLLYLKKNKFNA 582
           KG+ +T Y+LN   I LL K  P  N Y  A+     + T I R KKI   ++K + F  
Sbjct: 177 KGNVLTKYTLNPEIIHLL-KENPTFNFYTAAT-----LRTLINRCKKILNKHIKTHIFRF 230

Query: 581 FLIRIIRSSK 552
              R++ ++K
Sbjct: 231 TFARLVLNTK 240


>UniRef50_Q8THZ0 Cluster: Hydrogenase-3, subunit C; n=2;
           Methanosarcina|Rep: Hydrogenase-3, subunit C -
           Methanosarcina acetivorans
          Length = 648

 Score = 33.1 bits (72), Expect = 8.0
 Identities = 19/66 (28%), Positives = 35/66 (53%)
 Frame = -3

Query: 740 YSLNTRTITLLIKYIPLMNIYIDASRVPLQILTGIERIKKIFLLYLKKNKFNAFLIRIIR 561
           Y+L    I  L+ Y  + NI I  + + L ++ G+E ++ + LL L    F++F   + +
Sbjct: 289 YALKENDIKRLLAYSSIENIGIIFTGIGLYVIFGVEGLETLALLSLVGACFHSFNHALFK 348

Query: 560 SSKWLC 543
           S  +LC
Sbjct: 349 SLLFLC 354


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 502,318,777
Number of Sequences: 1657284
Number of extensions: 6978241
Number of successful extensions: 19330
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 18900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19329
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 65850543200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)