Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00014
         (781 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    23   3.2  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    23   3.2  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    23   3.2  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    22   7.4  
DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse tr...    21   9.7  

>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -3

Query: 644 TGIERIKKIFLLYLKKNKFNAFLIRIIRSSKW 549
           T  E IKK    Y+KK  +N   +  +  S W
Sbjct: 92  TRFEEIKKEVSSYIKKIGYNPAAVAFVPISGW 123


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -3

Query: 644 TGIERIKKIFLLYLKKNKFNAFLIRIIRSSKW 549
           T  E IKK    Y+KK  +N   +  +  S W
Sbjct: 108 TRFEEIKKEVSSYIKKIGYNPAAVAFVPISGW 139


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -3

Query: 644 TGIERIKKIFLLYLKKNKFNAFLIRIIRSSKW 549
           T  E IKK    Y+KK  +N   +  +  S W
Sbjct: 165 TRFEEIKKEVSSYIKKIGYNPAAVAFVPISGW 196


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -3

Query: 635 ERIKKIFLLYLKKNKFNAFLIRIIRSSKW 549
           E IKK    Y+KK  +N   +  +  S W
Sbjct: 168 EEIKKEVSSYIKKIGYNTASVAFVPISGW 196


>DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 42

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -3

Query: 611 LYLKKNKFNAFLI 573
           + +KKNK NAF++
Sbjct: 27  ILIKKNKCNAFIV 39


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,109
Number of Sequences: 438
Number of extensions: 1909
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)