Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00013
         (590 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1142.07c |vps32|snf7|vacuolar sorting protein Vps32|Schizosa...    27   2.0  
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro...    27   2.7  
SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    27   2.7  
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    25   6.2  
SPCC330.12c |sdh3||succinate dehydrogenase |Schizosaccharomyces ...    25   6.2  
SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    25   8.3  
SPCC338.11c |rrg1|uvi22|methyltransferase |Schizosaccharomyces p...    25   8.3  

>SPAC1142.07c |vps32|snf7|vacuolar sorting protein
           Vps32|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 222

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +2

Query: 38  PTHTQMVPAVPTQLSAVRSFQTISVTKDID 127
           P HT  VPAVP+Q   V+   +IS  +++D
Sbjct: 182 PVHTPAVPAVPSQ---VKDLPSISKPQELD 208


>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 240

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 189 VLEQSSAPSSSAMPGTPPSSSSVLIRHSG 275
           + +  +A SSS    TPP+S    IRH G
Sbjct: 147 IKQPKNANSSSTCTRTPPTSGRFSIRHDG 175


>SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 343

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = -3

Query: 495 AHCRCNXHQSLHHYEGEVSKHSIPWLSTP 409
           A  R N  Q    Y G    HS PW S+P
Sbjct: 146 AAVRKNTEQEKMGYRGGYQMHSTPWASSP 174


>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +3

Query: 204 SAPSSSAMPGTPPSS 248
           SAPSSS  P +PP+S
Sbjct: 3   SAPSSSTTPASPPTS 17


>SPCC330.12c |sdh3||succinate dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 180

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +3

Query: 24  HLQQYPPIHRWYLLSLHSSLQC 89
           HL  Y P   WYL SLH    C
Sbjct: 63  HLTIYEPQLTWYLSSLHRITGC 84


>SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 822

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +1

Query: 160 DSGSSWFRSWYW 195
           D G SWFR+ YW
Sbjct: 421 DCGMSWFRNEYW 432


>SPCC338.11c |rrg1|uvi22|methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 303

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -3

Query: 465 LHHYEGEVSKHSIPWLSTPD 406
           +  Y G VS H + W++ PD
Sbjct: 184 IQQYAGSVSCHVLDWMNPPD 203


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,397,376
Number of Sequences: 5004
Number of extensions: 47495
Number of successful extensions: 173
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)