Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00013
(590 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58279| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 4e-09
SB_30565| Best HMM Match : Metallothio (HMM E-Value=1.8) 30 1.2
SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_31541| Best HMM Match : EGF (HMM E-Value=0) 29 2.1
SB_20479| Best HMM Match : Collagen (HMM E-Value=1) 29 2.1
SB_52148| Best HMM Match : EGF (HMM E-Value=0) 29 3.8
SB_48688| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-26) 29 3.8
SB_30577| Best HMM Match : Ldl_recept_a (HMM E-Value=2.8e-25) 29 3.8
SB_10819| Best HMM Match : DCX (HMM E-Value=6.3e-19) 28 6.6
SB_5030| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_30175| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_16478| Best HMM Match : C2 (HMM E-Value=2.2e-13) 27 8.7
SB_28756| Best HMM Match : C1_4 (HMM E-Value=0.095) 27 8.7
SB_11973| Best HMM Match : Cupin_1 (HMM E-Value=3.4) 27 8.7
>SB_58279| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 744
Score = 58.4 bits (135), Expect = 4e-09
Identities = 37/82 (45%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Frame = +2
Query: 11 ALVRPLAAVPTHTQMVPAVPTQLS-AVRSFQTISVTKDIDSAAKFXXXXXXXXXXXXXXX 187
A +RP + +VPA P + A R FQT S +D+DSAAKF
Sbjct: 62 AAIRPQSQALVKA-VVPASPLLGALASRGFQTSSAVQDVDSAAKFIGAGAATVGAAGSGA 120
Query: 188 XXXXXFGSLIIGYARNPSLKQQ 253
FGSLIIGYARNPSLKQQ
Sbjct: 121 GIGTVFGSLIIGYARNPSLKQQ 142
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = +1
Query: 229 QEPLPQAAVFSYAILGFALSE 291
+ P + +FSYAILGFALSE
Sbjct: 135 RNPSLKQQLFSYAILGFALSE 155
>SB_30565| Best HMM Match : Metallothio (HMM E-Value=1.8)
Length = 565
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = -2
Query: 142 EFGSRVNVLSDRYGLEGPHCR-ELCRDSRYHLCMGG 38
E R NVLSD GLE CR LC + + C G
Sbjct: 76 EASQRCNVLSDAPGLETESCRCTLCDERGFSACRSG 111
>SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5834
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Frame = -2
Query: 193 NTSSGTSYSHCRCTSTNEFGSRVNVLSDRYGLEGPHCRELCRDSRYHLCMG-GYCCKWSH 17
NT Y + TN ++ Y G C +LC+ +++C G G C +W+
Sbjct: 5364 NTPCVFGYPVVQTNGTNTTSDKICECEQGYW--GEDCGKLCKGGIWNVCNGHGTCNRWTG 5421
Query: 16 QC 11
C
Sbjct: 5422 DC 5423
>SB_31541| Best HMM Match : EGF (HMM E-Value=0)
Length = 268
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +1
Query: 1 CNSGTGATTCSSTHPYTDGTCCPYTALCSAVLPDH 105
CN G TCS +T GT C TA CS ++ D+
Sbjct: 205 CNDGVNKYTCSCIPGFT-GTNCE-TANCSGIIKDY 237
>SB_20479| Best HMM Match : Collagen (HMM E-Value=1)
Length = 1214
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = -3
Query: 372 VVVFLKVNSLESEEQQERHHKTEQTHSLRQGETQNG 265
+V LK ESEE E H EQ H +Q +T NG
Sbjct: 208 LVPSLKKPRCESEEDDEEEHDLEQCHD-QQKDTSNG 242
>SB_52148| Best HMM Match : EGF (HMM E-Value=0)
Length = 1055
Score = 28.7 bits (61), Expect = 3.8
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Frame = +1
Query: 1 CNSGTGATTCSSTHPYTDGTCCPYTALC---SAVLPDHIGH*GH*LCCQIHWCWCSDSGS 171
C + TC YT TC + C S V + +G+ GH C+ CW SG+
Sbjct: 322 CTESNSSFTCECFSGYTGPTCAVVESACKPTSCVNGECVGN-GHNSSCK---CWKGYSGA 377
Query: 172 S 174
S
Sbjct: 378 S 378
>SB_48688| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-26)
Length = 351
Score = 28.7 bits (61), Expect = 3.8
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 25 TCSSTHPYTDGTCCPYTALCSAV 93
+CSS H DGTC ++ C+ V
Sbjct: 111 SCSSRHACADGTCVTWSLTCNGV 133
>SB_30577| Best HMM Match : Ldl_recept_a (HMM E-Value=2.8e-25)
Length = 147
Score = 28.7 bits (61), Expect = 3.8
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 25 TCSSTHPYTDGTCCPYTALCSAV 93
+CSS H DGTC ++ C+ V
Sbjct: 111 SCSSRHACADGTCVTWSLTCNGV 133
>SB_10819| Best HMM Match : DCX (HMM E-Value=6.3e-19)
Length = 1199
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = -2
Query: 280 RNPEWRMRTLLLEGGVPGIADDEGAEDCSNTSSGTSYSHCRCTSTNEFG 134
R+ EW R ++L V G+ E+ TSS S+SH +E G
Sbjct: 787 RDTEWNTRNVVLGYDVAGVWRSTPTEENLVTSSDLSWSHDLLAVGDELG 835
>SB_5030| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 296
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 7/34 (20%)
Frame = +1
Query: 166 GSSWFRSWYWNSLR--LPHH-----RLCQEPLPQ 246
G +WF SW W + LPH+ + C E LP+
Sbjct: 261 GENWFLSWIWPKITSPLPHNGTDYTQACNEELPK 294
>SB_30175| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 617
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -3
Query: 360 LKVNSLESEEQQERHHKTEQTHSLRQGETQN 268
LK E E+QQ +HHK E+ Q E Q+
Sbjct: 426 LKHQKQEEEQQQLQHHKQEEEQLKHQQEQQH 456
>SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2680
Score = 27.5 bits (58), Expect = 8.7
Identities = 17/56 (30%), Positives = 23/56 (41%)
Frame = -2
Query: 169 SHCRCTSTNEFGSRVNVLSDRYGLEGPHCRELCRDSRYHLCMGGYCCKWSHQCQSC 2
S CR + FG+ + D G C+ R HLC GY S C++C
Sbjct: 607 SGCRACECDPFGTLPGSVCDA-GSGQCRCKAGSTGLRCHLCEDGYHSLDSSGCKTC 661
>SB_16478| Best HMM Match : C2 (HMM E-Value=2.2e-13)
Length = 186
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +3
Query: 12 HWCDHLQQYPPIHRWY-LLSLHSSLQCGPSRPYRSLRTL 125
HW + + PI RW+ L H+SL P+RP R+ + +
Sbjct: 129 HWNEAMTAKKPIARWHSLREFHNSLL--PTRPNRTSKPI 165
>SB_28756| Best HMM Match : C1_4 (HMM E-Value=0.095)
Length = 201
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = -2
Query: 82 RELCRDSRYHLCMGGYCCKWSHQ 14
R CR HLC+G C+W Q
Sbjct: 173 RNGCRKCDVHLCVGDCFCEWHQQ 195
>SB_11973| Best HMM Match : Cupin_1 (HMM E-Value=3.4)
Length = 394
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/63 (20%), Positives = 30/63 (47%)
Frame = +3
Query: 72 HSSLQCGPSRPYRSLRTLTLLPNSLVLVQRQWE*LVPELVLEQSSAPSSSAMPGTPPSSS 251
H +Q P+ + +T++ P + + + +VP V QS S + G+P +++
Sbjct: 147 HMQIQAQPAGSAVTAQTVSAQPTMVTVASMASQPIVPSAVTAQSLIHSQRTLAGSPSTTA 206
Query: 252 SVL 260
++
Sbjct: 207 QLV 209
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,634,011
Number of Sequences: 59808
Number of extensions: 401135
Number of successful extensions: 1554
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1548
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1434459094
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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