Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00013
(590 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D86741-2|BAA21841.1| 92|Caenorhabditis elegans ATP synthase su... 49 2e-06
D86740-2|BAA13165.1| 92|Caenorhabditis elegans ATP synthase su... 49 2e-06
AC090999-18|AAK26152.1| 116|Caenorhabditis elegans Hypothetical... 49 2e-06
Z93785-1|CAB07858.1| 495|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z75531-12|CAA99806.4| 348|Caenorhabditis elegans Hypothetical p... 29 3.3
AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical... 28 4.3
AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical ... 28 4.3
U23139-2|AAL02483.1| 460|Caenorhabditis elegans Hypothetical pr... 27 7.5
Z80223-4|CAB02318.1| 229|Caenorhabditis elegans Hypothetical pr... 27 10.0
U53149-1|AAD31546.1| 328|Caenorhabditis elegans Prion-like-(q/n... 27 10.0
U39648-6|AAM15602.1| 557|Caenorhabditis elegans Abnormal dauer ... 27 10.0
AL023851-1|CAA19554.1| 149|Caenorhabditis elegans Hypothetical ... 27 10.0
AF407572-1|AAL65132.1| 557|Caenorhabditis elegans DAF-9 isoform... 27 10.0
>D86741-2|BAA21841.1| 92|Caenorhabditis elegans ATP synthase
subunit protein.
Length = 92
Score = 49.2 bits (112), Expect = 2e-06
Identities = 26/57 (45%), Positives = 29/57 (50%)
Frame = +2
Query: 83 AVRSFQTISVTKDIDSAAKFXXXXXXXXXXXXXXXXXXXXFGSLIIGYARNPSLKQQ 253
A R T KDIDSAAK+ FG+L+IGYARNPSLKQQ
Sbjct: 6 AARMISTTVARKDIDSAAKYIGAGAATVGVAGSGAGIGNVFGALVIGYARNPSLKQQ 62
Score = 28.7 bits (61), Expect = 3.3
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = +1
Query: 229 QEPLPQAAVFSYAILGFALSE 291
+ P + +FSYAILGFALSE
Sbjct: 55 RNPSLKQQLFSYAILGFALSE 75
>D86740-2|BAA13165.1| 92|Caenorhabditis elegans ATP synthase
subunit protein.
Length = 92
Score = 49.2 bits (112), Expect = 2e-06
Identities = 26/57 (45%), Positives = 29/57 (50%)
Frame = +2
Query: 83 AVRSFQTISVTKDIDSAAKFXXXXXXXXXXXXXXXXXXXXFGSLIIGYARNPSLKQQ 253
A R T KDIDSAAK+ FG+L+IGYARNPSLKQQ
Sbjct: 6 AARMISTTVARKDIDSAAKYIGAGAATVGVAGSGAGIGNVFGALVIGYARNPSLKQQ 62
Score = 28.7 bits (61), Expect = 3.3
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = +1
Query: 229 QEPLPQAAVFSYAILGFALSE 291
+ P + +FSYAILGFALSE
Sbjct: 55 RNPSLKQQLFSYAILGFALSE 75
>AC090999-18|AAK26152.1| 116|Caenorhabditis elegans Hypothetical
protein Y82E9BR.3 protein.
Length = 116
Score = 49.2 bits (112), Expect = 2e-06
Identities = 26/57 (45%), Positives = 29/57 (50%)
Frame = +2
Query: 83 AVRSFQTISVTKDIDSAAKFXXXXXXXXXXXXXXXXXXXXFGSLIIGYARNPSLKQQ 253
A R T KDIDSAAK+ FG+L+IGYARNPSLKQQ
Sbjct: 30 AARMISTTVARKDIDSAAKYIGAGAATVGVAGSGAGIGNVFGALVIGYARNPSLKQQ 86
Score = 28.7 bits (61), Expect = 3.3
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = +1
Query: 229 QEPLPQAAVFSYAILGFALSE 291
+ P + +FSYAILGFALSE
Sbjct: 79 RNPSLKQQLFSYAILGFALSE 99
>Z93785-1|CAB07858.1| 495|Caenorhabditis elegans Hypothetical
protein W09D10.1 protein.
Length = 495
Score = 28.7 bits (61), Expect = 3.3
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -1
Query: 341 KAKSSRNAIIRQNRPIASDKAKPRMAYENTAA 246
K ++AI Q PI+S++A P A NTAA
Sbjct: 434 KTNYGQSAIHHQAAPISSNRASPMPAQSNTAA 465
>Z75531-12|CAA99806.4| 348|Caenorhabditis elegans Hypothetical
protein C54D10.6 protein.
Length = 348
Score = 28.7 bits (61), Expect = 3.3
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 379 PTYEVSVYTIWSGQPWNRMFGNLTLIVMQ 465
P + VSVY I PWN +F ++V Q
Sbjct: 29 PLFLVSVYCILKKSPWNMVFYKWLILVFQ 57
>AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 28.3 bits (60), Expect = 4.3
Identities = 22/74 (29%), Positives = 28/74 (37%), Gaps = 1/74 (1%)
Frame = -2
Query: 229 GIADDEGAEDCSNTSSGTSYSH-CRCTSTNEFGSRVNVLSDRYGLEGPHCRELCRDSRYH 53
G D+ + CS S G + S C C + + G GP C E CR RY
Sbjct: 1534 GFQGDKCEQKCSEGSFGPACSQQCNCGKYKCDATDGKCICP-VGRHGPLCEEECRPGRY- 1591
Query: 52 LCMGGYCCKWSHQC 11
G C+ QC
Sbjct: 1592 ----GQSCQNKCQC 1601
>AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 28.3 bits (60), Expect = 4.3
Identities = 22/74 (29%), Positives = 28/74 (37%), Gaps = 1/74 (1%)
Frame = -2
Query: 229 GIADDEGAEDCSNTSSGTSYSH-CRCTSTNEFGSRVNVLSDRYGLEGPHCRELCRDSRYH 53
G D+ + CS S G + S C C + + G GP C E CR RY
Sbjct: 1534 GFQGDKCEQKCSEGSFGPACSQQCNCGKYKCDATDGKCICP-VGRHGPLCEEECRPGRY- 1591
Query: 52 LCMGGYCCKWSHQC 11
G C+ QC
Sbjct: 1592 ----GQSCQNKCQC 1601
>U23139-2|AAL02483.1| 460|Caenorhabditis elegans Hypothetical
protein F13H8.11 protein.
Length = 460
Score = 27.5 bits (58), Expect = 7.5
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 39 PPIHRWYLLSLHSSLQCGPSRPYRSLRTLTLLPNS 143
PP+ YL ++ +S C PSR R LR + +S
Sbjct: 368 PPVECPYLRTIQNSENCEPSREMRFLRVPSAFASS 402
>Z80223-4|CAB02318.1| 229|Caenorhabditis elegans Hypothetical
protein F26D10.11 protein.
Length = 229
Score = 27.1 bits (57), Expect = 10.0
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = -2
Query: 106 YGLEGPHCRELCRDSRYHLCMGGYC-CKWSH 17
YG E P RE+C +Y L G C +W +
Sbjct: 133 YGWENPRVREICESKKYQL---GLCQIRWPY 160
>U53149-1|AAD31546.1| 328|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 16
protein.
Length = 328
Score = 27.1 bits (57), Expect = 10.0
Identities = 13/43 (30%), Positives = 18/43 (41%)
Frame = -2
Query: 199 CSNTSSGTSYSHCRCTSTNEFGSRVNVLSDRYGLEGPHCRELC 71
C NT TS S+C C + S + L P C++ C
Sbjct: 51 CHNTQQSTSASNCNCVLKSNSKSVPVTIKVSTKLCAPACQQSC 93
>U39648-6|AAM15602.1| 557|Caenorhabditis elegans Abnormal dauer
formation protein9, isoform b protein.
Length = 557
Score = 27.1 bits (57), Expect = 10.0
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +1
Query: 145 WCWCSDSGSSWFRSWYWNSLRLPHH 219
WC + S SSW + W + L HH
Sbjct: 19 WCNMNISQSSWIKCRDWMAFALSHH 43
>AL023851-1|CAA19554.1| 149|Caenorhabditis elegans Hypothetical
protein Y68A4B.1 protein.
Length = 149
Score = 27.1 bits (57), Expect = 10.0
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = -2
Query: 61 RYHLCMGGYCCKWSHQCQSC 2
+Y + G YCC SH C C
Sbjct: 6 KYEMNSGVYCCWRSHSCGQC 25
>AF407572-1|AAL65132.1| 557|Caenorhabditis elegans DAF-9 isoform A
protein.
Length = 557
Score = 27.1 bits (57), Expect = 10.0
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +1
Query: 145 WCWCSDSGSSWFRSWYWNSLRLPHH 219
WC + S SSW + W + L HH
Sbjct: 19 WCNMNISQSSWIKCRDWMAFALSHH 43
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,508,339
Number of Sequences: 27780
Number of extensions: 280054
Number of successful extensions: 1143
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1057
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1138
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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