Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00013
         (590 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   1.3  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   2.2  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   3.9  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   3.9  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   5.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   6.8  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   9.0  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   9.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.0  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +3

Query: 186 LVLEQSSAPSSSAMPGTPPSSS 251
           +VL  S  P   A P  PPSSS
Sbjct: 330 IVLGDSDTPPKPAPPPPPPSSS 351


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 9/28 (32%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = -3

Query: 363 FLKVNSLESEEQQERHHK-TEQTHSLRQ 283
           F++ +SL  ++QQ++HH+ +   H+  Q
Sbjct: 91  FMQQHSLYLQQQQQQHHQDSSSEHASNQ 118


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = +3

Query: 60  LLSLHSSLQCGPSRPYRSLRTLTLLPNS 143
           +L ++  L C   +  +S+R +T LP++
Sbjct: 208 MLGIYCRLYCYAQKHVKSIRAVTKLPDT 235


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +3

Query: 174 LVPELVLEQSSAPSSSAMPGTPPSSSS 254
           ++ E V+E +S+PS +    + PSSS+
Sbjct: 499 VIHEPVVETNSSPSPNPRIASAPSSST 525


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 9/27 (33%), Positives = 12/27 (44%)
 Frame = +3

Query: 195 EQSSAPSSSAMPGTPPSSSSVLIRHSG 275
           +QS A S  + PG  P       +H G
Sbjct: 208 QQSQAASQQSQPGMHPRQQQQAQQHQG 234


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 7/11 (63%), Positives = 9/11 (81%), Gaps = 1/11 (9%)
 Frame = +3

Query: 30  QQYP-PIHRWY 59
           Q +P P+HRWY
Sbjct: 237 QGFPVPVHRWY 247


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +2

Query: 263 TPFWVSPCLRLW 298
           TPF V P L++W
Sbjct: 183 TPFTVLPLLKVW 194


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +2

Query: 263 TPFWVSPCLRLW 298
           TPF V P L++W
Sbjct: 183 TPFTVLPLLKVW 194


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 6/22 (27%), Positives = 14/22 (63%)
 Frame = -3

Query: 342  ESEEQQERHHKTEQTHSLRQGE 277
            + ++QQ++  + +Q H  R+ E
Sbjct: 1219 QQQQQQQQQQQQQQQHQARERE 1240


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,853
Number of Sequences: 438
Number of extensions: 3097
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)