Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00012X
         (577 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    33   0.040
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz...    28   0.85 
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    27   2.0  
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ...    27   2.6  
SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase |Schiz...    25   6.0  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    25   6.0  

>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 32.7 bits (71), Expect = 0.040
 Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = -3

Query: 410 P*SPFCPGAPGNPGLPCFP*VPGKPFSPFIVK-PGRPVGPIGPVSPFSPIRP 258
           P  P  P AP  P  P     P  P +P +   P RP  P+ P +P  P RP
Sbjct: 512 PSVPQPPAAPVVPEAPSVHQPPAAPVAPEVPSAPQRPAAPVVPEAPSVPQRP 563


>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 873

 Score = 28.3 bits (60), Expect = 0.85
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 288 SYRSYRPTRLNYKRRKRLTRNSWKTW 365
           S+R    T+ NY    RL   SW+TW
Sbjct: 314 SWREITKTKANYDNGIRLENASWRTW 339


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +2

Query: 326  KEKKAYQELMENMGGQDYLVLQDKKAI-KVY 415
            K+KK Y++  EN+G  D L + D + I +VY
Sbjct: 1271 KQKKYYEQYKENLGFFDSLCIGDNECITRVY 1301


>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 932

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 16/42 (38%), Positives = 19/42 (45%)
 Frame = -3

Query: 377 NPGLPCFP*VPGKPFSPFIVKPGRPVGPIGPVSPFSPIRPVN 252
           NP +   P  P     P  +KP  P    G  SP SPI PV+
Sbjct: 403 NPTVNNLPSYPTNLARPKAIKP-MPTSIHGQTSPLSPIPPVH 443


>SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 369

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 78  SFMTSIPYWSYWTF 37
           SF+  +PYW+ W F
Sbjct: 237 SFIVVVPYWALWPF 250


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = -3

Query: 428 PGSPGRP*SPFCPGAPGNPGLP 363
           PG P  P  P  PGA   PG P
Sbjct: 540 PGYPAVPAMPGIPGATAPPGAP 561


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.313    0.144    0.460 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,961,213
Number of Sequences: 5004
Number of extensions: 35005
Number of successful extensions: 80
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)