Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00012X
(577 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0187 + 32209924-32210634 38 0.006
06_01_0145 + 1092764-1093351 37 0.013
03_06_0188 + 32212297-32212746 35 0.040
04_01_0162 + 1845295-1846317,1846430-1846565,1848436-1848626,184... 32 0.28
07_01_0479 + 3606663-3607448 31 0.50
04_04_0397 - 24921892-24922947,24923486-24923734,24923807-249241... 31 0.50
02_02_0369 - 9505330-9505652,9507262-9507532,9507649-9507690,950... 31 0.50
07_03_0350 + 17077481-17078225,17078585-17078647,17078773-17078786 31 0.87
07_01_0247 + 1813979-1814207,1815293-1815351,1815725-1815802,181... 29 2.7
06_01_0745 + 5570821-5571496,5572205-5572322,5572410-5572571,557... 29 2.7
06_03_0287 - 19168685-19168735,19168847-19168884,19169517-191697... 29 3.5
03_01_0336 - 2659349-2659486,2659607-2659758,2660257-2660365,266... 29 3.5
03_05_0663 + 26546810-26547304 28 4.6
09_04_0506 - 18188785-18190599 28 6.1
07_01_0674 + 5047503-5047646,5047808-5047901,5048743-5048828,504... 28 6.1
06_01_1057 + 8441881-8442278,8442464-8442548,8442637-8442867 28 6.1
01_06_0565 + 30287253-30287502,30287522-30289010,30289133-302892... 28 6.1
10_06_0141 - 11151344-11151531,11151926-11152275,11153119-111532... 27 8.1
08_02_1291 + 25930056-25930067,25930289-25930334,25930434-259305... 27 8.1
07_03_1160 - 24430240-24431268 27 8.1
01_03_0176 - 13461331-13461573,13464880-13465106,13465214-13465535 27 8.1
>03_06_0187 + 32209924-32210634
Length = 236
Score = 37.9 bits (84), Expect = 0.006
Identities = 22/52 (42%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = -3
Query: 428 PGSPGRP*-SPFCPGAPGNPGLPCFP*VPGKPFSPFIVKPGRPVGPIGPVSP 276
P PG P P P PG P +P P VP P +P V P P P+ PV+P
Sbjct: 127 PTIPGVPAVGPTIPTIPGVPTIPTVPGVPELPVNPGGVVPTIPKVPLPPVNP 178
>06_01_0145 + 1092764-1093351
Length = 195
Score = 36.7 bits (81), Expect = 0.013
Identities = 20/38 (52%), Positives = 24/38 (63%)
Frame = +2
Query: 149 PGEPGQKGDRGLPGLQGLQGEKGDRGSLGEKGDQGLLG 262
PGEPGQ G+ G PG +G +G +G RG G G G LG
Sbjct: 15 PGEPGQPGEPGQPGGRG-RGGRGGRGGRGGAG--GRLG 49
Score = 36.7 bits (81), Expect = 0.013
Identities = 21/44 (47%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +2
Query: 134 GPSGIPGEPGQKGDRGLPGLQGLQGEKGDRGSLGEK-GDQGLLG 262
G G PGEPGQ G RG G G G G G LG + G +G G
Sbjct: 16 GEPGQPGEPGQPGGRGRGGRGGRGGRGGAGGRLGVRHGRRGRRG 59
>03_06_0188 + 32212297-32212746
Length = 149
Score = 35.1 bits (77), Expect = 0.040
Identities = 23/53 (43%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Frame = -3
Query: 401 PFCPGAPG----NPGLPCFP*VPGKPFSPFIVKPGRPVGPIGPVSP-FSPIRP 258
P PG PG PG+P P VPG P +V PG P P+ P P PI P
Sbjct: 46 PAIPGVPGVPAVGPGIPVIPGVPGVP----VVGPGIPFVPVIPGVPVIVPIIP 94
>04_01_0162 +
1845295-1846317,1846430-1846565,1848436-1848626,
1848780-1848887,1849001-1849204,1849294-1849525,
1849602-1849751,1849830-1850007,1850416-1850519,
1850611-1850933,1851274-1851459,1851672-1851899
Length = 1020
Score = 32.3 bits (70), Expect = 0.28
Identities = 18/53 (33%), Positives = 21/53 (39%)
Frame = -3
Query: 425 GSPGRP*SPFCPGAPGNPGLPCFP*VPGKPFSPFIVKPGRPVGPIGPVSPFSP 267
G PGRP S F PGA P P +PF+ P P P + P
Sbjct: 13 GVPGRPVSAFVPGAATAAPPPSSFGAASAPRAPFVPPPQAAASPAAPFAAAPP 65
>07_01_0479 + 3606663-3607448
Length = 261
Score = 31.5 bits (68), Expect = 0.50
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = -3
Query: 392 PGAPGNPGLPCFP*VPGKP-FSPFIVKPGRPVGPIGPVSPFSPIRPVNLGL 243
P PG P P P + G P P V+PG P GP + P P P G+
Sbjct: 195 PAFPGGPPPPPGPFMRGPPPMGPPQVRPGMPGGPPPGMRPGMPPPPFRPGM 245
Score = 29.1 bits (62), Expect = 2.7
Identities = 16/39 (41%), Positives = 18/39 (46%)
Frame = -3
Query: 392 PGAPGNPGLPCFP*VPGKPFSPFIVKPGRPVGPIGPVSP 276
PG PG P P +P PF +PG P P GP P
Sbjct: 222 PGMPGGPPPGMRPGMPPPPF-----RPGMPPPPPGPQQP 255
>04_04_0397 -
24921892-24922947,24923486-24923734,24923807-24924157,
24924244-24924331,24924466-24924563,24925141-24925362,
24925490-24925585,24926410-24926481,24927156-24927305
Length = 793
Score = 31.5 bits (68), Expect = 0.50
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +2
Query: 143 GIPGEPGQKGDRGLPGLQGLQGE 211
G+PG PG G R +PG+ GL +
Sbjct: 498 GMPGTPGMPGSRKMPGMPGLDND 520
>02_02_0369 -
9505330-9505652,9507262-9507532,9507649-9507690,
9508416-9508458,9508853-9508860
Length = 228
Score = 31.5 bits (68), Expect = 0.50
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = -3
Query: 398 FCPGAPGNPGLPCFP*VPGKPFSPFIVKPGRPVG-PIGPVSPFSP-IRP 258
F GAP N L FP +P P + PG P+G P P +P P +RP
Sbjct: 64 FQVGAPFNQHLLSFPGGVPRPRLPILPTPGMPLGVPQVPGAPLMPGVRP 112
Score = 29.5 bits (63), Expect = 2.0
Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 8/56 (14%)
Frame = -3
Query: 422 SPGRP*S-PFCPGAPGNPGL-------PCFP*VPGKPFSPFIVKPGRPVGPIGPVS 279
+PG P P PGAP PG+ P P PG P P + + G P G + P S
Sbjct: 91 TPGMPLGVPQVPGAPLMPGVRPPILPAPGIPGYPGAPNVPTMPQTGAPPGSMPPGS 146
Score = 27.9 bits (59), Expect = 6.1
Identities = 17/41 (41%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = -3
Query: 428 PGSPG-RP*SPFCPGAPGNPGLPCFP*VPGKPFSPFIVKPG 309
P PG RP PG PG PG P P +P P + PG
Sbjct: 105 PLMPGVRPPILPAPGIPGYPGAPNVPTMPQTGAPPGSMPPG 145
>07_03_0350 + 17077481-17078225,17078585-17078647,17078773-17078786
Length = 273
Score = 30.7 bits (66), Expect = 0.87
Identities = 22/59 (37%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Frame = -3
Query: 428 PGSPGRP*SPFCPGAPGNPGLPC--FP*VPGKPFSPFI-VKPGRPVGPIG-PVSPFSPI 264
PG P P P PG P P LP P +P P P + + PG P P P+S S +
Sbjct: 95 PGLPTLPQLPTIPGLPQLPTLPTIQIPELPPLPPLPSVSITPGSPGAPARIPISSQSAL 153
>07_01_0247 +
1813979-1814207,1815293-1815351,1815725-1815802,
1816369-1816536,1816664-1817578
Length = 482
Score = 29.1 bits (62), Expect = 2.7
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Frame = -3
Query: 413 RP*SPFCPGAPGNPGLPCF--P*VPGKPFSP-FIVKPGRPVGPIGPVSPFSPIRPVN 252
RP +P PG G G+P P VPG P+S F ++P P+ P + P + PV+
Sbjct: 316 RPFTPLLPG--GTSGVPMIPPPPVPGSPWSQIFPLRP--PLFPSPELVPSQQLPPVS 368
>06_01_0745 +
5570821-5571496,5572205-5572322,5572410-5572571,
5572650-5572681,5573406-5573584,5573697-5573897
Length = 455
Score = 29.1 bits (62), Expect = 2.7
Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Frame = +2
Query: 131 VGPSGIPGEPGQKGD-RGLPGLQGLQGEKGDRGSLGEKGDQGLLGEWEKKVTLVLSV 298
+ PS PG GD G PG + G GS+ + L+ W VLS+
Sbjct: 350 LAPSPAPGAGEAGGDIPGFPGSSNVSPANGPSGSVSQAASGALIWAWWNPNVKVLSI 406
>06_03_0287 -
19168685-19168735,19168847-19168884,19169517-19169727,
19171461-19171643,19171879-19172028,19172161-19172256,
19172378-19172464,19172535-19172741,19172823-19173047,
19173150-19173261,19173397-19173453,19175522-19176882
Length = 925
Score = 28.7 bits (61), Expect = 3.5
Identities = 19/50 (38%), Positives = 24/50 (48%)
Frame = +1
Query: 1 GGLKGDRGQPGAEGPIGPIGYRGHKGDTGLPGVSIDIKGDKGXSGSKRYS 150
GG + RGQ G G + + RG+ D PG KG +G G RYS
Sbjct: 205 GGFRSTRGQRGRGGRLANVSRRGYDFDDE-PGFQ-SPKGQRGQGG--RYS 250
>03_01_0336 -
2659349-2659486,2659607-2659758,2660257-2660365,
2660459-2660563,2660874-2660957,2661072-2662745
Length = 753
Score = 28.7 bits (61), Expect = 3.5
Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Frame = -3
Query: 434 NCPGSPGRP*SP--FCPGAPGNPGLPCFP*VPGKPFSPFIVKPGRPVGP 294
N P SPG P P F P PG P L +P G + V P P+ P
Sbjct: 326 NIPHSPGHPLLPGVFVPPFPGGPLL--WPGARGVDVNMLSVPPNLPIPP 372
Score = 27.9 bits (59), Expect = 6.1
Identities = 19/63 (30%), Positives = 26/63 (41%)
Frame = +2
Query: 116 VTKXEVGPSGIPGEPGQKGDRGLPGLQGLQGEKGDRGSLGEKGDQGLLGEWEKKVTLVLS 295
VT G EP Q G + G KGDR S G +G G ++V + L
Sbjct: 247 VTYGTNGDKVTNSEPDQSGSASMISQFPQHGHKGDRPSRGGRGRPN--GRDSQRVGVTLP 304
Query: 296 VLP 304
++P
Sbjct: 305 IMP 307
>03_05_0663 + 26546810-26547304
Length = 164
Score = 28.3 bits (60), Expect = 4.6
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Frame = +2
Query: 122 KXEVGPSGIPG-EPGQKGDRGLPGLQGLQGEKGDRGSLGEKGDQGLLGEW 268
K V P G PG PG G G+P + G G G +G G+ G W
Sbjct: 44 KPSVQP-GYPGTNPGGGGGGGIPTIPGFGSIPGMGGGMGGFNVPGMGGGW 92
>09_04_0506 - 18188785-18190599
Length = 604
Score = 27.9 bits (59), Expect = 6.1
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +1
Query: 1 GGLKGDRGQPG-AEGPIGPIGYRGHKGDTGL 90
GG G RGQ G +GP+G RG G+ G+
Sbjct: 336 GGGMGGRGQAGNMRNRMGPVGGRGLMGNGGM 366
>07_01_0674 +
5047503-5047646,5047808-5047901,5048743-5048828,
5049380-5049429,5049517-5049586,5049668-5049749,
5049867-5050267,5050414-5050941,5051823-5052044
Length = 558
Score = 27.9 bits (59), Expect = 6.1
Identities = 21/57 (36%), Positives = 26/57 (45%)
Frame = -3
Query: 428 PGSPGRP*SPFCPGAPGNPGLPCFP*VPGKPFSPFIVKPGRPVGPIGPVSPFSPIRP 258
P P P GAPG P P P PG P P + PG+ + P P P P++P
Sbjct: 231 PPPPPPPKPANIAGAPGLPLPPPPPPPPGPP--PREIVPGQTLLP--PPPPPRPLQP 283
>06_01_1057 + 8441881-8442278,8442464-8442548,8442637-8442867
Length = 237
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +2
Query: 158 PGQKGDRGLPGLQGLQGEKGDRG 226
PG++G R PG Q QG +G RG
Sbjct: 7 PGRRGRRRQPGCQIRQGREGRRG 29
>01_06_0565 +
30287253-30287502,30287522-30289010,30289133-30289277,
30289679-30289729
Length = 644
Score = 27.9 bits (59), Expect = 6.1
Identities = 24/68 (35%), Positives = 26/68 (38%), Gaps = 5/68 (7%)
Frame = -3
Query: 434 NCPGSPGRP*SPFCPGAPGNPGLPC-FP*VPGKPFSPFIVKPGR--PVGPIG--PVSPFS 270
+ P SP SP PG +P PC P P SP G P IG P SP S
Sbjct: 413 SAPPSPSSGTSPTTPGGGYSPSTPCNAPPSPSSDTSPTTPGGGNYPPAPTIGNVPPSPSS 472
Query: 269 PIRPVNLG 246
P G
Sbjct: 473 GTSPSTPG 480
>10_06_0141 -
11151344-11151531,11151926-11152275,11153119-11153274,
11153505-11153674,11155431-11155589,11157139-11157447,
11157550-11157750
Length = 510
Score = 27.5 bits (58), Expect = 8.1
Identities = 14/27 (51%), Positives = 15/27 (55%)
Frame = -3
Query: 326 FIVKPGRPVGPIGPVSPFSPIRPVNLG 246
F V GR V P +P PIR VNLG
Sbjct: 18 FSVSDGRTVRPAKRGAPSPPIRAVNLG 44
>08_02_1291 +
25930056-25930067,25930289-25930334,25930434-25930546,
25930645-25930930,25931357-25931421,25931642-25931693,
25931774-25931883,25932611-25932641,25932853-25933004,
25934622-25934840
Length = 361
Score = 27.5 bits (58), Expect = 8.1
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +2
Query: 131 VGPSGIPGEPGQKGDRGLPGLQGLQGEKGDRGSLGEKGDQ 250
+GP G+ G P + GLP G G + GS E+G Q
Sbjct: 150 MGPGGMYGMPMDRYSLGLPAGPGPMGARA--GSYSEEGSQ 187
>07_03_1160 - 24430240-24431268
Length = 342
Score = 27.5 bits (58), Expect = 8.1
Identities = 18/58 (31%), Positives = 26/58 (44%)
Frame = -3
Query: 422 SPGRP*SPFCPGAPGNPGLPCFP*VPGKPFSPFIVKPGRPVGPIGPVSPFSPIRPVNL 249
+P +P P P P P +P P G P + +P RP P P+S P+ N+
Sbjct: 121 NPNQPPQPN-PNGPPKPDMPPMPKPDGLPNT---YEPSRPDQPPQPISDGPPLPNPNV 174
>01_03_0176 - 13461331-13461573,13464880-13465106,13465214-13465535
Length = 263
Score = 27.5 bits (58), Expect = 8.1
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +2
Query: 203 QGEKGDRGSLGEKGDQGLL 259
+G KGD+G G+ GD+G+L
Sbjct: 92 KGAKGDKGDGGDAGDKGVL 110
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.313 0.144 0.460
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,420,860
Number of Sequences: 37544
Number of extensions: 253571
Number of successful extensions: 668
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
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