Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00012X
(577 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g64450.1 68414.m07306 proline-rich family protein contains pr... 50 1e-06
At5g28480.1 68418.m03462 hypothetical protein 39 0.003
At2g12100.1 68415.m01300 Ulp1 protease family protein contains P... 39 0.003
At1g45090.1 68414.m05169 Ulp1 protease family protein similar to... 39 0.003
At1g44222.1 68414.m05107 hypothetical protein 37 0.011
At3g02670.1 68416.m00258 proline-rich family protein contains pr... 36 0.026
At2g37410.2 68415.m04588 mitochondrial import inner membrane tra... 35 0.034
At2g37410.1 68415.m04587 mitochondrial import inner membrane tra... 35 0.034
At3g50570.1 68416.m05531 hydroxyproline-rich glycoprotein family... 35 0.045
At3g05220.2 68416.m00570 heavy-metal-associated domain-containin... 34 0.059
At3g05220.1 68416.m00569 heavy-metal-associated domain-containin... 34 0.059
At3g24780.1 68416.m03110 hypothetical protein 34 0.078
At5g15780.1 68418.m01845 pollen Ole e 1 allergen and extensin fa... 33 0.14
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex... 33 0.14
At2g17200.1 68415.m01986 ubiquitin family protein weak similarit... 31 0.73
At4g32375.1 68417.m04610 glycoside hydrolase family 28 protein /... 29 1.7
At3g60240.1 68416.m06732 MIF4G domain-containing protein / MA3 d... 29 1.7
At1g73860.1 68414.m08552 kinesin motor protein-related similar t... 29 1.7
At4g25630.1 68417.m03691 fibrillarin 2 (FIB2) identical to fibri... 27 6.8
At4g24680.1 68417.m03533 expressed protein 27 6.8
At5g07510.1 68418.m00860 glycine-rich protein (GRP14) oleosin; g... 27 9.0
At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical t... 27 9.0
At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical t... 27 9.0
At1g51405.1 68414.m05786 myosin-related low similarity to nonmus... 27 9.0
>At1g64450.1 68414.m07306 proline-rich family protein contains
proline rich extensins, INTERPRO:IPR0002965
Length = 342
Score = 50.0 bits (114), Expect = 1e-06
Identities = 26/59 (44%), Positives = 30/59 (50%)
Frame = -3
Query: 428 PGSPGRP*SPFCPGAPGNPGLPCFP*VPGKPFSPFIVKPGRPVGPIGPVSPFSPIRPVN 252
PG P P +P P PGNPG P P PG P P I P P P+ P +P P+ P N
Sbjct: 190 PGPPSFPRNPGSPEFPGNPGAPIIPRNPGSPEFP-INPPRNPGAPVIPRNPNPPVFPGN 247
Score = 49.6 bits (113), Expect = 1e-06
Identities = 27/57 (47%), Positives = 29/57 (50%)
Frame = -3
Query: 428 PGSPGRP*SPFCPGAPGNPGLPCFP*VPGKPFSPFIVKPGRPVGPIGPVSPFSPIRP 258
P SP P +P P GNPG P FP PG P F PG P+ P P SP PI P
Sbjct: 172 PESPDLPGNPGSPDFSGNPGPPSFPRNPGSP--EFPGNPGAPIIPRNPGSPEFPINP 226
Score = 41.1 bits (92), Expect = 5e-04
Identities = 25/58 (43%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = -3
Query: 428 PGSPGRP*SPFCPGAPGNPGLPCFP*VPGKPFSP-FIVKPGRPVGPIGPVSPFSPIRP 258
PG P +P P +P PG P P +PG P SP F PG P P P SP P P
Sbjct: 151 PGPPDFTVTPRNPDSPYFPGYPESPDLPGNPGSPDFSGNPGPPSFPRNPGSPEFPGNP 208
Score = 31.5 bits (68), Expect = 0.42
Identities = 20/48 (41%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Frame = -3
Query: 428 PGSPGRP*SPFCPGAPGNP---GLPCFP*VPGKPFSPFIVKPGRPVGP 294
PG+P P +P P PGNP G P FP + G P P G GP
Sbjct: 230 PGAPVIPRNPNPPVFPGNPRSMGPPGFPGIGGPPGFPGTPFGGGGTGP 277
Score = 28.3 bits (60), Expect = 3.9
Identities = 23/55 (41%), Positives = 24/55 (43%), Gaps = 8/55 (14%)
Frame = -3
Query: 428 PGSP----GRP*SPFCPGAPGNPGLPCFP*VP---GKPFSPFI-VKPGRPVGPIG 288
PGSP P +P P P NP P FP P G P P I PG P P G
Sbjct: 217 PGSPEFPINPPRNPGAPVIPRNPNPPVFPGNPRSMGPPGFPGIGGPPGFPGTPFG 271
>At5g28480.1 68418.m03462 hypothetical protein
Length = 1230
Score = 38.7 bits (86), Expect = 0.003
Identities = 20/41 (48%), Positives = 22/41 (53%)
Frame = +2
Query: 128 EVGPSGIPGEPGQKGDRGLPGLQGLQGEKGDRGSLGEKGDQ 250
E GPSG GE G G G G G GE G G+ GE GD+
Sbjct: 436 EGGPSGGDGEGGPSGGDGEGGPNGADGEGGPNGADGEVGDE 476
>At2g12100.1 68415.m01300 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At5g28270, At2g05450,
At1g45090, At2g16180, At2g06750
Length = 1224
Score = 38.7 bits (86), Expect = 0.003
Identities = 20/41 (48%), Positives = 22/41 (53%)
Frame = +2
Query: 128 EVGPSGIPGEPGQKGDRGLPGLQGLQGEKGDRGSLGEKGDQ 250
E GPSG GE G G G G G GE G G+ GE GD+
Sbjct: 449 EGGPSGGDGEGGPSGGDGEGGPNGADGEGGPNGADGEVGDE 489
>At1g45090.1 68414.m05169 Ulp1 protease family protein similar to
At5g28270, At2g12100, At2g05450, At2g16180, At2g06750;
contains Pfam profile PF02902: Ulp1 protease family,
C-terminal catalytic domain
Length = 1210
Score = 38.7 bits (86), Expect = 0.003
Identities = 20/41 (48%), Positives = 22/41 (53%)
Frame = +2
Query: 128 EVGPSGIPGEPGQKGDRGLPGLQGLQGEKGDRGSLGEKGDQ 250
E GPSG GE G G G G G GE G G+ GE GD+
Sbjct: 440 EGGPSGGDGEGGPSGGDGEGGPNGADGEGGPNGADGEVGDE 480
>At1g44222.1 68414.m05107 hypothetical protein
Length = 85
Score = 36.7 bits (81), Expect = 0.011
Identities = 18/44 (40%), Positives = 24/44 (54%)
Frame = +2
Query: 131 VGPSGIPGEPGQKGDRGLPGLQGLQGEKGDRGSLGEKGDQGLLG 262
+G G+ G PG G G+ G+ G+ G G G LG G G+LG
Sbjct: 5 LGRPGMLGSPGMLGILGMFGISGMVGRLGILGRLGMMGIPGMLG 48
>At3g02670.1 68416.m00258 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 217
Score = 35.5 bits (78), Expect = 0.026
Identities = 27/62 (43%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
Frame = -3
Query: 428 PGSPG-RP*SPFC------PGAPGNPGLPCFP*VPGKP-FSPFIVKPGRPVGPIGPVSPF 273
PGSPG R PF PG PG PG+P P +PG P F P P G P P
Sbjct: 92 PGSPGFRLPFPFPSSPGGNPGIPGIPGIPGLPGIPGSPGFRLPFPFPSSPGGGSIPGIPG 151
Query: 272 SP 267
SP
Sbjct: 152 SP 153
Score = 31.9 bits (69), Expect = 0.32
Identities = 23/61 (37%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Frame = -3
Query: 428 PGSPGRP*SPFCPGAPG-NPGLPCFP*VPGKPFSPFIVKPGRPVGPIGPVSPFSPIRPVN 252
P SPG P PG+PG P P G P P P PV G PF P+ PV
Sbjct: 138 PSSPGGGSIPGIPGSPGFRLPFPFPPSGGGIPGLPLPFPPLPPVTIPGLPLPFPPLPPVT 197
Query: 251 L 249
+
Sbjct: 198 I 198
Score = 30.7 bits (66), Expect = 0.73
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +2
Query: 137 PSGIPGEPGQKGDRGLPGLQGLQGEKGDR 223
PS G PG G G+PGL G+ G G R
Sbjct: 104 PSSPGGNPGIPGIPGIPGLPGIPGSPGFR 132
Score = 28.7 bits (61), Expect = 2.9
Identities = 27/63 (42%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = -3
Query: 428 PGSPG-RP*SPFCPGAPGNPGLPCFP*VPGKPFSPFIVKPGRPVGPIG-PVSPFSPIRPV 255
PGSPG R PF GNPG+P P PF PF PG G G P P P P
Sbjct: 70 PGSPGFRLPFPFPSSPGGNPGIPGSPGF-RLPF-PFPSSPGGNPGIPGIPGIPGLPGIPG 127
Query: 254 NLG 246
+ G
Sbjct: 128 SPG 130
Score = 27.1 bits (57), Expect = 9.0
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 134 GPSGIPGEPGQKGDRGLPGLQGLQ 205
G GIPG PG G G+PG G +
Sbjct: 109 GNPGIPGIPGIPGLPGIPGSPGFR 132
Score = 27.1 bits (57), Expect = 9.0
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1
Query: 328 GEKGLPGTHGKHGRPGLPGA 387
G G+PG G G PG+PG+
Sbjct: 109 GNPGIPGIPGIPGLPGIPGS 128
>At2g37410.2 68415.m04588 mitochondrial import inner membrane
translocase (TIM17) nearly identical to SP|Q9SP35
Mitochondrial import inner membrane translocase subunit
TIM17 {Arabidopsis thaliana}
Length = 243
Score = 35.1 bits (77), Expect = 0.034
Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = +2
Query: 143 GIPGEPGQKGDRGLPGLQGLQGEKGDRG-SLGEKGDQ 250
G+ G PG +G +G+PG+ G+QG G +G +G+ Q
Sbjct: 149 GMQGMPGMQGMQGMPGMPGMQGMPGMQGMQMGQMQSQ 185
Score = 34.3 bits (75), Expect = 0.059
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +2
Query: 134 GPSGIPGEPGQKGDRGLPGLQGLQGEKG 217
G G+PG G +G G+PG+QG+ G +G
Sbjct: 149 GMQGMPGMQGMQGMPGMPGMQGMPGMQG 176
Score = 33.5 bits (73), Expect = 0.10
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = +2
Query: 170 GDRGLPGLQGLQGEKGDRGSLGEKGDQGL-LGEWEKKVTL 286
G +G+PG+QG+QG G G G G QG+ +G+ + + +
Sbjct: 149 GMQGMPGMQGMQGMPGMPGMQGMPGMQGMQMGQMQSQAQI 188
Score = 32.7 bits (71), Expect = 0.18
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +2
Query: 134 GPSGIPGEPGQKGDRGLPGLQGLQ 205
G G+ G PG G +G+PG+QG+Q
Sbjct: 155 GMQGMQGMPGMPGMQGMPGMQGMQ 178
Score = 30.7 bits (66), Expect = 0.73
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +2
Query: 155 EPGQKGDRGLPGLQGLQGEKGDRGSLGEKGDQ 250
+PG +G G+ G+QG+ G G +G G +G Q
Sbjct: 147 DPGMQGMPGMQGMQGMPGMPGMQGMPGMQGMQ 178
Score = 29.5 bits (63), Expect = 1.7
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1
Query: 328 GEKGLPGTHGKHGRPGLPG 384
G +G+PG G G PG+PG
Sbjct: 149 GMQGMPGMQGMQGMPGMPG 167
Score = 28.3 bits (60), Expect = 3.9
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 185 PGLQGLQGEKGDRGSLGEKGDQGLLG 262
PG+QG+ G +G +G G G QG+ G
Sbjct: 148 PGMQGMPGMQGMQGMPGMPGMQGMPG 173
>At2g37410.1 68415.m04587 mitochondrial import inner membrane
translocase (TIM17) nearly identical to SP|Q9SP35
Mitochondrial import inner membrane translocase subunit
TIM17 {Arabidopsis thaliana}
Length = 243
Score = 35.1 bits (77), Expect = 0.034
Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = +2
Query: 143 GIPGEPGQKGDRGLPGLQGLQGEKGDRG-SLGEKGDQ 250
G+ G PG +G +G+PG+ G+QG G +G +G+ Q
Sbjct: 149 GMQGMPGMQGMQGMPGMPGMQGMPGMQGMQMGQMQSQ 185
Score = 34.3 bits (75), Expect = 0.059
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +2
Query: 134 GPSGIPGEPGQKGDRGLPGLQGLQGEKG 217
G G+PG G +G G+PG+QG+ G +G
Sbjct: 149 GMQGMPGMQGMQGMPGMPGMQGMPGMQG 176
Score = 33.5 bits (73), Expect = 0.10
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = +2
Query: 170 GDRGLPGLQGLQGEKGDRGSLGEKGDQGL-LGEWEKKVTL 286
G +G+PG+QG+QG G G G G QG+ +G+ + + +
Sbjct: 149 GMQGMPGMQGMQGMPGMPGMQGMPGMQGMQMGQMQSQAQI 188
Score = 32.7 bits (71), Expect = 0.18
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +2
Query: 134 GPSGIPGEPGQKGDRGLPGLQGLQ 205
G G+ G PG G +G+PG+QG+Q
Sbjct: 155 GMQGMQGMPGMPGMQGMPGMQGMQ 178
Score = 30.7 bits (66), Expect = 0.73
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +2
Query: 155 EPGQKGDRGLPGLQGLQGEKGDRGSLGEKGDQ 250
+PG +G G+ G+QG+ G G +G G +G Q
Sbjct: 147 DPGMQGMPGMQGMQGMPGMPGMQGMPGMQGMQ 178
Score = 29.5 bits (63), Expect = 1.7
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1
Query: 328 GEKGLPGTHGKHGRPGLPG 384
G +G+PG G G PG+PG
Sbjct: 149 GMQGMPGMQGMQGMPGMPG 167
Score = 28.3 bits (60), Expect = 3.9
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 185 PGLQGLQGEKGDRGSLGEKGDQGLLG 262
PG+QG+ G +G +G G G QG+ G
Sbjct: 148 PGMQGMPGMQGMQGMPGMPGMQGMPG 173
>At3g50570.1 68416.m05531 hydroxyproline-rich glycoprotein family
protein contains proline-rich protein domains,
INTERPRO:IPR000694
Length = 189
Score = 34.7 bits (76), Expect = 0.045
Identities = 20/43 (46%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Frame = -3
Query: 434 NCPGSPGRP*SPF--CPGAP--GNPGLPCFP*VPGKPFSPFIV 318
N P PG P PF PG P PGLP P +PG PF +V
Sbjct: 68 NIPQIPGIPNIPFPNIPGIPIPNIPGLPNIPGLPGPPFESLLV 110
>At3g05220.2 68416.m00570 heavy-metal-associated domain-containing
protein similar to farnesylated protein 1 (GI:23304411)
{Hordeum vulgare subsp. spontaneum}; contains Pfam
profile PF00403: Heavy-metal-associated domain
Length = 478
Score = 34.3 bits (75), Expect = 0.059
Identities = 19/46 (41%), Positives = 23/46 (50%)
Frame = -3
Query: 425 GSPGRP*SPFCPGAPGNPGLPCFP*VPGKPFSPFIVKPGRPVGPIG 288
G P P P PG P G P PG P S ++ PG P+GP+G
Sbjct: 324 GGPMGPGGPMGPGGPMGQGGPMGMMGPGGPMS--MMGPGGPMGPMG 367
>At3g05220.1 68416.m00569 heavy-metal-associated domain-containing
protein similar to farnesylated protein 1 (GI:23304411)
{Hordeum vulgare subsp. spontaneum}; contains Pfam
profile PF00403: Heavy-metal-associated domain
Length = 577
Score = 34.3 bits (75), Expect = 0.059
Identities = 19/46 (41%), Positives = 23/46 (50%)
Frame = -3
Query: 425 GSPGRP*SPFCPGAPGNPGLPCFP*VPGKPFSPFIVKPGRPVGPIG 288
G P P P PG P G P PG P S ++ PG P+GP+G
Sbjct: 423 GGPMGPGGPMGPGGPMGQGGPMGMMGPGGPMS--MMGPGGPMGPMG 466
>At3g24780.1 68416.m03110 hypothetical protein
Length = 715
Score = 33.9 bits (74), Expect = 0.078
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = -3
Query: 320 VKPGRPVGPIGPVSPFSPIRPV 255
V+P RPV PI PV P P+RPV
Sbjct: 75 VRPVRPVRPIRPVRPVRPVRPV 96
Score = 32.3 bits (70), Expect = 0.24
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -3
Query: 320 VKPGRPVGPIGPVSPFSPIRPV 255
V P RPV P+ P+ P P+RPV
Sbjct: 72 VNPVRPVRPVRPIRPVRPVRPV 93
Score = 28.7 bits (61), Expect = 2.9
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -3
Query: 320 VKPGRPVGPIGPVSPFSPIR 261
V+P RP+ P+ PV P P+R
Sbjct: 78 VRPVRPIRPVRPVRPVRPVR 97
>At5g15780.1 68418.m01845 pollen Ole e 1 allergen and extensin
family protein contains Pfam profile PF01190: Pollen
proteins Ole e I family
Length = 401
Score = 33.1 bits (72), Expect = 0.14
Identities = 23/52 (44%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = -3
Query: 434 NCPGSPGRP*S-PF-CPGAPGNPGLPCFP*VPGKPFSPFIVKPGRPVGPIGP 285
N P P P S P P PG PG+P P +PG P +P I PG P P+ P
Sbjct: 346 NPPSLPPPPPSFPVPLPPVPGLPGIPPVPLIPGIPPAPLI--PGIP--PLSP 393
>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 839
Score = 33.1 bits (72), Expect = 0.14
Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = -3
Query: 428 PGSP-GRP*SPFCPGAPGNPGLPCFP*VPGKPFSPFIVKPGRPVGPIGPVSPFSPI 264
P SP P +P P P +PG P +P PF+ P P P+ PV P PI
Sbjct: 554 PSSPIPSPPTPSTPPTPISPGQNSPPIIPSPPFTG-PSPPSSPSPPLPPVIPSPPI 608
>At2g17200.1 68415.m01986 ubiquitin family protein weak similarity
to PLIC-2 (ubiquitin-like type II) [Homo sapiens]
GI:9937505; contains Pfam profiles PF00240: Ubiquitin
family, PF00627: UBA/TS-N domain
Length = 551
Score = 30.7 bits (66), Expect = 0.73
Identities = 19/43 (44%), Positives = 21/43 (48%)
Frame = +2
Query: 134 GPSGIPGEPGQKGDRGLPGLQGLQGEKGDRGSLGEKGDQGLLG 262
G + PG GD PGL GL G GSLG G G+LG
Sbjct: 332 GQTTAPGRTNVGGDARSPGLGGL----GGLGSLGGLGGLGMLG 370
>At4g32375.1 68417.m04610 glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein similar to
polygalacturonase [Lycopersicon esculentum] GI:4325090;
contains Pfam profile PF00295: Polygalacturonase
(pectinase)
Length = 486
Score = 29.5 bits (63), Expect = 1.7
Identities = 16/39 (41%), Positives = 18/39 (46%)
Frame = -3
Query: 392 PGAPGNPGLPCFP*VPGKPFSPFIVKPGRPVGPIGPVSP 276
P P P P P KP +P KP R VGP+ P P
Sbjct: 363 PLVPVEPPQQVEPPTPTKPLAP--AKPPRHVGPLMPTKP 399
>At3g60240.1 68416.m06732 MIF4G domain-containing protein / MA3
domain-containing protein similar to eukaryotic protein
synthesis initiation factor [Homo sapiens] GI:3941724;
contains Pfam profiles PF02854: MIF4G domain, PF02847:
MA3 domain
Length = 1544
Score = 29.5 bits (63), Expect = 1.7
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = -3
Query: 398 FCPGAPGNPGLPCFP*VPGKPFSPFIVKPGRPVGPIGPVSPFSP 267
F PG GN G+ P + G P I +P +PVGP+G + +P
Sbjct: 827 FRPGQGGNSGVLRNPRMQG----PIISRPMQPVGPMGGMGRNTP 866
>At1g73860.1 68414.m08552 kinesin motor protein-related similar to
kinesin-C GB:AAF04841 from [Strongylocentrotus
purpuratus]
Length = 1030
Score = 29.5 bits (63), Expect = 1.7
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -3
Query: 332 SPFIVKPGRPVGPIGPVSPFSPIRPVNL 249
+P +PG P G P SPFSP P+++
Sbjct: 2 NPMRDQPGSPYGDSTPRSPFSPFSPLSV 29
>At4g25630.1 68417.m03691 fibrillarin 2 (FIB2) identical to
fibrillarin 2 GI:9965655 from [Arabidopsis thaliana]
Length = 320
Score = 27.5 bits (58), Expect = 6.8
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +1
Query: 1 GGLKGDRGQPGAEGPIGPIGYRGHKGDTGLPG 96
GG G RG+ G G G G+ G +G G G
Sbjct: 10 GGFSGGRGRGGYSGGRGDGGFSGGRGGGGRGG 41
>At4g24680.1 68417.m03533 expressed protein
Length = 1480
Score = 27.5 bits (58), Expect = 6.8
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Frame = +1
Query: 4 GLKGDRGQPGAEGPIGPIGYRGHKGDTG--LPGVSIDIK 114
G +R P A P GP Y H G G PG S+ ++
Sbjct: 454 GSPSNRDLPFAGRPTGPHAYNNHSGQGGYDTPGSSVSLE 492
>At5g07510.1 68418.m00860 glycine-rich protein (GRP14) oleosin;
glycine-rich protein 14 (GRP14) PMID:11431566;
PIR:JQ1063
Length = 193
Score = 27.1 bits (57), Expect = 9.0
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = +2
Query: 131 VGPSGIPGEPGQKGDRGLP-GLQGLQGEKGDRGSLGEKGDQGLLG 262
+G G+PG G G GLP GL GL G + + + G G
Sbjct: 118 LGGGGLPGGLGGLGGGGLPGGLGGLGGGENPLAKISKMFGPGAAG 162
>At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical to
protodermal factor 1 [Arabidopsis thaliana]
gi|4929130|gb|AAD33869
Length = 306
Score = 27.1 bits (57), Expect = 9.0
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = -3
Query: 410 P*SPFC-PGAPGNPGLPCFP*V-PGKPFSPFIVKPGRPV 300
P SP PG P G P P + PG P +PFI P P+
Sbjct: 150 PPSPIVDPGTPIIGGSPPTPIIDPGTPGTPFIPAPFPPI 188
>At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical to
protodermal factor 1 [Arabidopsis thaliana]
gi|4929130|gb|AAD33869
Length = 306
Score = 27.1 bits (57), Expect = 9.0
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = -3
Query: 410 P*SPFC-PGAPGNPGLPCFP*V-PGKPFSPFIVKPGRPV 300
P SP PG P G P P + PG P +PFI P P+
Sbjct: 150 PPSPIVDPGTPIIGGSPPTPIIDPGTPGTPFIPAPFPPI 188
>At1g51405.1 68414.m05786 myosin-related low similarity to nonmuscle
myosin heavy chain from Gallus gallus [GI:212449],
Xenopus laevis [GI:214624], Homo sapiens [GI:641958]
Length = 487
Score = 27.1 bits (57), Expect = 9.0
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = +3
Query: 129 KWVQAVFLVNQVKREIEVSQDYKDYKEKKVIVA 227
+W Q ++NQV++E+E Q +D+ + + + A
Sbjct: 338 QWSQMQEMLNQVRKEMEELQSCRDFWQNRALEA 370
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.313 0.144 0.460
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,640,655
Number of Sequences: 28952
Number of extensions: 197427
Number of successful extensions: 572
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 523
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1121903184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
- SilkBase 1999-2023 -