Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00011
         (439 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin relat...    32   0.21 
Z82089-5|CAD91717.1| 4541|Caenorhabditis elegans Hypothetical pr...    27   7.9  
Z82089-4|CAB54513.2| 4648|Caenorhabditis elegans Hypothetical pr...    27   7.9  
Z82089-2|CAB05003.2| 4530|Caenorhabditis elegans Hypothetical pr...    27   7.9  
Z81499-7|CAD91628.1| 4541|Caenorhabditis elegans Hypothetical pr...    27   7.9  
Z81499-6|CAB54224.2| 4648|Caenorhabditis elegans Hypothetical pr...    27   7.9  
Z81499-4|CAB04090.2| 4530|Caenorhabditis elegans Hypothetical pr...    27   7.9  
AC006611-1|AAK85455.2|  348|Caenorhabditis elegans Vacuolar h at...    27   7.9  

>AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin related.
            see also lmb-protein 1 protein.
          Length = 1067

 Score = 31.9 bits (69), Expect = 0.21
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +1

Query: 100  SCISGKRGRRC--CNIWHWGSVDSISGSRARFQLSGN 204
            +C SG +G RC  C   HWGS   + G+  R   +GN
Sbjct: 973  NCKSGYQGERCGECAQNHWGSPREVGGTCERCDCNGN 1009


>Z82089-5|CAD91717.1| 4541|Caenorhabditis elegans Hypothetical protein
            ZK270.2e protein.
          Length = 4541

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -1

Query: 370  KQKRSDPVAMSRTGDV*HHLMAWGLPWQQQSTVTQ 266
            +QK  D + +S    V HH  +W +  Q+QST++Q
Sbjct: 957  RQKELDQIPISSHAAVYHHGKSWSI--QRQSTLSQ 989


>Z82089-4|CAB54513.2| 4648|Caenorhabditis elegans Hypothetical protein
            ZK270.2d protein.
          Length = 4648

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -1

Query: 370  KQKRSDPVAMSRTGDV*HHLMAWGLPWQQQSTVTQ 266
            +QK  D + +S    V HH  +W +  Q+QST++Q
Sbjct: 946  RQKELDQIPISSHAAVYHHGKSWSI--QRQSTLSQ 978


>Z82089-2|CAB05003.2| 4530|Caenorhabditis elegans Hypothetical protein
            ZK270.2a protein.
          Length = 4530

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -1

Query: 370  KQKRSDPVAMSRTGDV*HHLMAWGLPWQQQSTVTQ 266
            +QK  D + +S    V HH  +W +  Q+QST++Q
Sbjct: 946  RQKELDQIPISSHAAVYHHGKSWSI--QRQSTLSQ 978


>Z81499-7|CAD91628.1| 4541|Caenorhabditis elegans Hypothetical protein
            ZK270.2e protein.
          Length = 4541

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -1

Query: 370  KQKRSDPVAMSRTGDV*HHLMAWGLPWQQQSTVTQ 266
            +QK  D + +S    V HH  +W +  Q+QST++Q
Sbjct: 957  RQKELDQIPISSHAAVYHHGKSWSI--QRQSTLSQ 989


>Z81499-6|CAB54224.2| 4648|Caenorhabditis elegans Hypothetical protein
            ZK270.2d protein.
          Length = 4648

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -1

Query: 370  KQKRSDPVAMSRTGDV*HHLMAWGLPWQQQSTVTQ 266
            +QK  D + +S    V HH  +W +  Q+QST++Q
Sbjct: 946  RQKELDQIPISSHAAVYHHGKSWSI--QRQSTLSQ 978


>Z81499-4|CAB04090.2| 4530|Caenorhabditis elegans Hypothetical protein
            ZK270.2a protein.
          Length = 4530

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -1

Query: 370  KQKRSDPVAMSRTGDV*HHLMAWGLPWQQQSTVTQ 266
            +QK  D + +S    V HH  +W +  Q+QST++Q
Sbjct: 946  RQKELDQIPISSHAAVYHHGKSWSI--QRQSTLSQ 978


>AC006611-1|AAK85455.2|  348|Caenorhabditis elegans Vacuolar h
           atpase protein 16 protein.
          Length = 348

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 308 HEVMLNITRSRHRYRIGPFLFYLELK 385
           HEV LN+    H++  G F  +++LK
Sbjct: 294 HEVKLNVHSYLHQFHFGVFYAFIKLK 319


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,460,788
Number of Sequences: 27780
Number of extensions: 177392
Number of successful extensions: 319
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 319
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 745968860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)