Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00008
         (801 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces pomb...    31   0.14 
SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr ...    27   3.1  
SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase |Schizosacch...    27   3.1  
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    25   9.5  
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    25   9.5  

>SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 372

 Score = 31.5 bits (68), Expect = 0.14
 Identities = 19/68 (27%), Positives = 33/68 (48%)
 Frame = -2

Query: 344 IGVSTIPNNTNPRYIFAS*RTQYKQLFFPTILVSSRVYFQLFLIENREYRQGLKLDANVD 165
           +G +  P++    Y+ A  +    ++  P++ VS+  Y  L+      YRQ LKL A  +
Sbjct: 171 VGDNRSPSSFRLHYMVAPDKVDESKVHIPSLFVSTSSYNLLWSDLLHSYRQPLKLYAKPE 230

Query: 164 RYGDRLVW 141
             GD + W
Sbjct: 231 ELGD-MFW 237


>SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -1

Query: 270 AFFSYHSSKLEGLFSAVPH*ESGVPAGPEAGR 175
           +F S++S +  G+F+A      GVP GP  G+
Sbjct: 195 SFLSFNSKEAAGVFNADKALALGVPFGPSNGK 226


>SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = -3

Query: 754 FLTT*ITLRSQCIFVNIFYKLNIIRYTSPF 665
           +L T + ++S+C +VN +Y L++I +   F
Sbjct: 181 YLETCVLVQSRCFYVNSYYGLSLIPFFDIF 210


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = +2

Query: 146 QGGPRTGP-RSRPASGPAGTPDSQ*GTAENKPSSLLEW*EKK 268
           Q G  + P +  PA    GTP    G+  + P+S+  W  +K
Sbjct: 17  QAGQSSDPMQDDPAKTEPGTPKGYDGSKNSSPASVPSWIHEK 58


>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 573 GGRAHSPSGIKWLLEPIDIHN 511
           GG  H P+ + WLL P DI++
Sbjct: 235 GGPLHDPNTVMWLLRP-DIYS 254


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,228,152
Number of Sequences: 5004
Number of extensions: 69395
Number of successful extensions: 118
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)