Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00008
(801 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0521 + 3867922-3867967,3868282-3868544,3868680-3868744,386... 33 0.26
07_01_0975 + 8223269-8224354 31 1.4
07_03_1028 - 23378140-23378802 30 1.9
05_03_0035 - 7592177-7592938 30 2.5
05_03_0033 - 7585267-7586028 30 2.5
11_05_0077 - 18866707-18867334,18867410-18867555 29 4.3
04_04_1218 - 31822915-31823141,31823418-31823832,31824090-318244... 29 4.3
02_05_0021 - 25101738-25101881,25119662-25120331,25122562-251237... 29 4.3
05_07_0365 - 29662703-29662710,29664321-29664378,29664675-296647... 28 7.5
12_01_1097 + 11531899-11532277,11532482-11533287,11534015-115342... 28 9.9
>07_01_0521 +
3867922-3867967,3868282-3868544,3868680-3868744,
3868828-3868990,3869798-3869946,3870041-3870289,
3870860-3871028,3871110-3871202,3871703-3871952,
3872127-3872217,3872673-3872769
Length = 544
Score = 33.1 bits (72), Expect = 0.26
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +1
Query: 64 VEGFHCHGWIMKP*YSGLSATVPLFPHTRRS 156
+ GF W++KP Y +S ++PLF + RRS
Sbjct: 107 ISGFSSLPWLIKPLYGFISDSIPLFGYRRRS 137
>07_01_0975 + 8223269-8224354
Length = 361
Score = 30.7 bits (66), Expect = 1.4
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 134 YSPTQGGPRTGPRSRPASGPAGTPDS 211
Y + G P + P S P+S P+G+P S
Sbjct: 237 YGGSSGSPSSSPSSSPSSSPSGSPSS 262
Score = 29.9 bits (64), Expect = 2.5
Identities = 15/25 (60%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = +2
Query: 140 PTQGGPRTGPRS-RPASGPAGTPDS 211
PT GGP +GP S ASGPA P S
Sbjct: 280 PTAGGPASGPSSYGAASGPAEGPSS 304
>07_03_1028 - 23378140-23378802
Length = 220
Score = 30.3 bits (65), Expect = 1.9
Identities = 16/33 (48%), Positives = 18/33 (54%)
Frame = +2
Query: 113 GCRRLSRYSPTQGGPRTGPRSRPASGPAGTPDS 211
G RR R +PT GPR P + P PA PDS
Sbjct: 140 GGRRSQRRAPTISGPRVPPPATPP--PAALPDS 170
>05_03_0035 - 7592177-7592938
Length = 253
Score = 29.9 bits (64), Expect = 2.5
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +2
Query: 134 YSPTQGGPRTGPRSRPASGPAGTPDSQ*GT-AENKPSSLLE 253
YS + GP+ P+ P + A P+S+ T +E+KP S E
Sbjct: 72 YSQAKPGPKDEPKPEPEAMSASQPESKPATYSESKPESKAE 112
>05_03_0033 - 7585267-7586028
Length = 253
Score = 29.9 bits (64), Expect = 2.5
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +2
Query: 134 YSPTQGGPRTGPRSRPASGPAGTPDSQ*GT-AENKPSSLLE 253
YS + GP+ P+ P + A P+S+ T +E+KP S E
Sbjct: 72 YSQAKPGPKDEPKPEPEAMSASQPESKPATYSESKPESKAE 112
>11_05_0077 - 18866707-18867334,18867410-18867555
Length = 257
Score = 29.1 bits (62), Expect = 4.3
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = -1
Query: 195 AGPEAGRERGPVRGPPCVGE*RDSRRQPRVLRLHNPAVAVKP 70
A P+A RG P VG R +R PR+L H P V ++P
Sbjct: 56 AAPDAVAHRGE---DPGVGARRGARAGPRLLPPHRPPVPLRP 94
>04_04_1218 - 31822915-31823141,31823418-31823832,31824090-31824440,
31825391-31825549,31825965-31826093,31826257-31826460,
31827200-31827412,31827547-31830912,31830999-31831150,
31831912-31832407,31832646-31833456,31833537-31834728,
31834856-31834922
Length = 2593
Score = 29.1 bits (62), Expect = 4.3
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 559 VSSSTHLSNKKKIYYSFFIISYHKNHKYAFTL 654
++S+ LS K+KIY F +S H HK T+
Sbjct: 2317 IASTMRLSMKRKIYQPHFSLSLHGIHKLCRTI 2348
>02_05_0021 -
25101738-25101881,25119662-25120331,25122562-25123779,
25123859-25124109
Length = 760
Score = 29.1 bits (62), Expect = 4.3
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = -2
Query: 458 QLQLLRTNILILVTLRRHSTVDVLRYAIEFWR-PDHVDDIGVSTIPNNTNPRYIFAS 291
Q LL+ + V R + +D RY I PD VDD +++ P N R+ F++
Sbjct: 60 QAMLLQLKTMRNVMYRGYYFLDNFRYRIALGHAPDEVDDHSLASFPFNPLKRFRFST 116
>05_07_0365 -
29662703-29662710,29664321-29664378,29664675-29664732,
29665029-29665086,29665737-29665794,29666091-29666134,
29666445-29666502,29666799-29666981,29667154-29667211,
29667508-29667565,29667862-29667919,29668216-29668259,
29668570-29668627,29668924-29669106,29669279-29669336,
29669633-29669676,29669987-29670044,29670341-29670398,
29670696-29670753,29671050-29671052
Length = 420
Score = 28.3 bits (60), Expect = 7.5
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -2
Query: 788 YSIDNRTRHVFISYDLNHFTKSVYICEYFL*TKHYPLY 675
YS+ RT F++YD+ FT++ L T Y ++
Sbjct: 160 YSMFRRTNRCFVAYDIRRFTETTAASWPMLWTLRYSMF 197
Score = 28.3 bits (60), Expect = 7.5
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -2
Query: 788 YSIDNRTRHVFISYDLNHFTKSVYICEYFL*TKHYPLY 675
YS+ RT F++YD+ FT++ L T Y ++
Sbjct: 313 YSMFRRTNRCFVAYDIRRFTETTAASWPMLWTLRYSMF 350
>12_01_1097 +
11531899-11532277,11532482-11533287,11534015-11534284,
11534939-11535454
Length = 656
Score = 27.9 bits (59), Expect = 9.9
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +2
Query: 101 RSTRGCRRLSRYSPTQGGPRTGPRSRPASGPAGTPDSQ*GTAENKPSSL 247
+ T R+L + P Q P + P+ R SGP+ +P + T + S+
Sbjct: 371 KQTTPARKLEQ--PAQRKPPSAPKPRKGSGPSSSPHDESSTRSSADVSM 417
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,790,487
Number of Sequences: 37544
Number of extensions: 408533
Number of successful extensions: 929
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 929
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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