Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00007
(402 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_20851| Best HMM Match : Cbl_N3 (HMM E-Value=0) 31 0.35
SB_606| Best HMM Match : HMG_box (HMM E-Value=0.19) 30 0.81
SB_28011| Best HMM Match : PSCyt1 (HMM E-Value=5.6) 29 1.1
SB_32722| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.1
SB_39530| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.4
SB_4414| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.4
SB_50768| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.3
SB_23536| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.3
SB_8051| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.3
SB_6924| Best HMM Match : TTL (HMM E-Value=4.4e-09) 28 3.3
SB_2311| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.3
SB_40630| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.3
SB_30283| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.3
SB_25452| Best HMM Match : CTF_NFI (HMM E-Value=1.2) 27 4.3
SB_1010| Best HMM Match : Spt4 (HMM E-Value=6.9) 27 4.3
SB_57482| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0) 27 5.7
SB_54925| Best HMM Match : MFS_1 (HMM E-Value=4.7e-27) 27 5.7
SB_50275| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.7
SB_15904| Best HMM Match : Collagen (HMM E-Value=4.1e-11) 27 5.7
SB_7778| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.7
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 26 10.0
SB_38221| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 10.0
SB_22219| Best HMM Match : LIM (HMM E-Value=8.2e-22) 26 10.0
SB_40429| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0036) 26 10.0
SB_19953| Best HMM Match : Trehalase (HMM E-Value=0.66) 26 10.0
SB_13374| Best HMM Match : Cornifin (HMM E-Value=0.34) 26 10.0
SB_830| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 10.0
>SB_20851| Best HMM Match : Cbl_N3 (HMM E-Value=0)
Length = 695
Score = 31.1 bits (67), Expect = 0.35
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = -1
Query: 249 QGGPRTSPRSHPASGPAGTPGSR*GTAVGRP 157
+ PRTSPRS P + P G+P S + VG P
Sbjct: 345 KNSPRTSPRSSPFASPTGSPTS---SPVGSP 372
>SB_606| Best HMM Match : HMG_box (HMM E-Value=0.19)
Length = 159
Score = 29.9 bits (64), Expect = 0.81
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -1
Query: 288 YSGLSATVPLFPTQGGPRTSPRSHPASG 205
YS L T + P+QGG SPR P+ G
Sbjct: 46 YSALEQTGKVRPSQGGKEKSPRKQPSVG 73
>SB_28011| Best HMM Match : PSCyt1 (HMM E-Value=5.6)
Length = 491
Score = 29.5 bits (63), Expect = 1.1
Identities = 23/60 (38%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Frame = -1
Query: 366 VTWSDVAAVVWDVGGFHCHGWIMKP*YSGLSATVPL--FP-TQGGPRTSPRSHPASGPAG 196
VT S V A+ W GG P G AT P+ P GG TSP + PA G G
Sbjct: 150 VTTSPVTALPWVQGGVATSPVTALPWVQGGVATSPVTALPWVHGGVTTSPVTGPAMGTGG 209
>SB_32722| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 603
Score = 29.5 bits (63), Expect = 1.1
Identities = 15/40 (37%), Positives = 18/40 (45%)
Frame = -1
Query: 246 GGPRTSPRSHPASGPAGTPGSR*GTAVGRPPSLGINTRCV 127
GG + P GP+G+PG G AV IN CV
Sbjct: 478 GGAPSPMGGGPPGGPSGSPGGLSGPAVDECEKCDINAICV 517
>SB_39530| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1323
Score = 29.1 bits (62), Expect = 1.4
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +1
Query: 247 LCGEQRDSRRQPRVLRLHNPAVAVKPSYIPDD 342
L G +R RQP RL PAV K S +P++
Sbjct: 1197 LLGNRRFQHRQPSYSRLRAPAVGQKKSDLPEN 1228
>SB_4414| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 877
Score = 29.1 bits (62), Expect = 1.4
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -1
Query: 189 GSR*GTAVGRPPSLGINTRCVSSHWNRSIPRSSCHR 82
G R GRPPS+ + SS+W+ S+ R+ R
Sbjct: 197 GQRATAQEGRPPSVSSDLSVASSYWDPSLTRTRSRR 232
>SB_50768| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1069
Score = 27.9 bits (59), Expect = 3.3
Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Frame = -1
Query: 270 TVPLFPTQGGPRTSPRSHPASGPAG-TPGSR*GTAVGRPPS 151
T P G +TSP P PAG T G G +PP+
Sbjct: 529 TTPQSMIPPGTKTSPTPKPPGSPAGSTQGPTDGVVSAKPPT 569
Score = 27.5 bits (58), Expect = 4.3
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +2
Query: 158 GRPTAVPHREPGVPAGPEAGCERGLVRGPP 247
G+PTA + PG P G G G+V P
Sbjct: 495 GKPTAPTPKPPGSPVGVTQGPTEGVVSAKP 524
>SB_23536| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 414
Score = 27.9 bits (59), Expect = 3.3
Identities = 18/48 (37%), Positives = 18/48 (37%), Gaps = 2/48 (4%)
Frame = +2
Query: 158 GRPTAVPHREPGVPAGPEAGCERGLVRGPPCVG--NNGTVADNPEYYG 295
G P P R G P G RG RGPP G G D YG
Sbjct: 77 GPPRGHPMRGRGAPYGRGGPPSRGPPRGPPLPGPPRRGPPPDRDSGYG 124
Score = 26.2 bits (55), Expect = 10.0
Identities = 14/31 (45%), Positives = 14/31 (45%)
Frame = -1
Query: 246 GGPRTSPRSHPASGPAGTPGSR*GTAVGRPP 154
G PR PR HP G G P R G PP
Sbjct: 73 GPPRGPPRGHPMRG-RGAPYGRGGPPSRGPP 102
>SB_8051| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 840
Score = 27.9 bits (59), Expect = 3.3
Identities = 15/51 (29%), Positives = 21/51 (41%)
Frame = -1
Query: 306 WIMKP*YSGLSATVPLFPTQGGPRTSPRSHPASGPAGTPGSR*GTAVGRPP 154
W + ++ TV P GP + R SGP+ PG T +G P
Sbjct: 160 WYVAEFIPSITTTVGTKPKPSGPDQTGRKPKPSGPSHNPGDH-ATTLGTKP 209
>SB_6924| Best HMM Match : TTL (HMM E-Value=4.4e-09)
Length = 458
Score = 27.9 bits (59), Expect = 3.3
Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = -1
Query: 276 SATVPL--FPTQGGPRTSPRSHPASGPAGTPGSR*GTAVGRPP 154
S+TVPL T G P ++ RS P PA PG R T+ PP
Sbjct: 367 SSTVPLRQASTTGRPPSAQRSGP---PARAPGQRIVTSSSSPP 406
>SB_2311| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 247
Score = 27.9 bits (59), Expect = 3.3
Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = -1
Query: 276 SATVPL--FPTQGGPRTSPRSHPASGPAGTPGSR*GTAVGRPP 154
S+TVPL T G P ++ RS P PA PG R T+ PP
Sbjct: 75 SSTVPLRQASTTGRPPSAQRSGP---PARAPGQRIVTSSSSPP 114
>SB_40630| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2174
Score = 27.9 bits (59), Expect = 3.3
Identities = 15/51 (29%), Positives = 20/51 (39%)
Frame = +2
Query: 158 GRPTAVPHREPGVPAGPEAGCERGLVRGPPCVGNNGTVADNPEYYGFIIQP 310
G T P R P P RG R G++ + N + GF+ QP
Sbjct: 1752 GPETEPPRRSRAPPPRPPPPSSRGHSRSGSTAGSSQALTYNQQVIGFLSQP 1802
>SB_30283| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1417
Score = 27.9 bits (59), Expect = 3.3
Identities = 20/47 (42%), Positives = 23/47 (48%)
Frame = +2
Query: 155 GGRPTAVPHREPGVPAGPEAGCERGLVRGPPCVGNNGTVADNPEYYG 295
GG+PT P GV GPE +G RG P G V + PEY G
Sbjct: 992 GGQPTDGPVY--GVLEGPEY---KGTYRGQPTDGPVYGVLEGPEYEG 1033
>SB_25452| Best HMM Match : CTF_NFI (HMM E-Value=1.2)
Length = 1056
Score = 27.5 bits (58), Expect = 4.3
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -1
Query: 279 LSATVPLFPTQGGPRTSPRSHPASGPAG 196
+S+T P +G P+T PRS GPAG
Sbjct: 472 VSSTYATEP-EGSPKTPPRSQRPDGPAG 498
>SB_1010| Best HMM Match : Spt4 (HMM E-Value=6.9)
Length = 99
Score = 27.5 bits (58), Expect = 4.3
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +3
Query: 57 KLDVNVDSYGDRKTWGSNDSSEKRHTWYLYPVKVGDQQ 170
K+ +N S+ +TW N KR +YP++ G +Q
Sbjct: 31 KVKLNPGSWACEETWQKNSKDIKRAIKGIYPMEEGPKQ 68
>SB_57482| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
Length = 789
Score = 27.1 bits (57), Expect = 5.7
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -1
Query: 273 ATVPLFPTQGGPRTSPRSHPASGPAG 196
A+ P F P +SP S+PAS AG
Sbjct: 468 ASYPAFSPASYPASSPASYPASSTAG 493
>SB_54925| Best HMM Match : MFS_1 (HMM E-Value=4.7e-27)
Length = 1373
Score = 27.1 bits (57), Expect = 5.7
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +3
Query: 21 FKILNTEHEMYLKLDVNVDSYGDRKTWGS--NDSSEKRHTWYLYPVKVGDQQLFLIEN 188
F I +T+ ++ L V + + W S + S K++ +P+KVGD +FL N
Sbjct: 1072 FTITSTKAQVTLSCAVEHPFFVYGQGWSSCVPEQSLKKYNLQCHPLKVGDVCIFLTPN 1129
>SB_50275| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 118
Score = 27.1 bits (57), Expect = 5.7
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Frame = -1
Query: 249 QGGPRTSPRSHPASGPAGTP-GSR*GTAVGRP 157
+G P +P P P GTP G+ GT G P
Sbjct: 30 EGAPEGTPEGTPEGTPEGTPEGTPEGTPEGTP 61
>SB_15904| Best HMM Match : Collagen (HMM E-Value=4.1e-11)
Length = 376
Score = 27.1 bits (57), Expect = 5.7
Identities = 15/41 (36%), Positives = 18/41 (43%)
Frame = -1
Query: 249 QGGPRTSPRSHPASGPAGTPGSR*GTAVGRPPSLGINTRCV 127
Q GP+ P +GPAG G R P G T+CV
Sbjct: 249 QQGPQGPPGPKGDTGPAGPGGPRGNQGPPGPSGTGDLTQCV 289
>SB_7778| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 461
Score = 27.1 bits (57), Expect = 5.7
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +2
Query: 176 PHREPGVPAGPEAGCERGLVRGPPCVGNNG 265
PH++P VP P+ R + PP ++G
Sbjct: 244 PHKKPAVPPAPDLSLTRKRMAPPPPTPSSG 273
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 26.2 bits (55), Expect = 10.0
Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Frame = +2
Query: 146 PSEGGRPTAVPHREPGVPA----GPEAGCERGLVRGPP 247
P +GG P H +PG PA GP G R PP
Sbjct: 216 PLQGGPPQGESHGQPGPPALLQQGPPGPPFHGEPRPPP 253
>SB_38221| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 575
Score = 26.2 bits (55), Expect = 10.0
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +1
Query: 331 IPDDCRYI*PCYNKFY 378
+ D CRY CY KFY
Sbjct: 503 VRDGCRYCMECYGKFY 518
>SB_22219| Best HMM Match : LIM (HMM E-Value=8.2e-22)
Length = 163
Score = 26.2 bits (55), Expect = 10.0
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +1
Query: 331 IPDDCRYI*PCYNKFY 378
+ D CRY CY KFY
Sbjct: 91 VRDGCRYCMECYGKFY 106
>SB_40429| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0036)
Length = 311
Score = 26.2 bits (55), Expect = 10.0
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +2
Query: 320 NPPTSQTTAATSDHVTINFITVKKKKK 400
NPPT SDH +++ VK+ K+
Sbjct: 183 NPPTQLPAFGMSDHFSVDLQPVKRSKR 209
>SB_19953| Best HMM Match : Trehalase (HMM E-Value=0.66)
Length = 1097
Score = 26.2 bits (55), Expect = 10.0
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +2
Query: 320 NPPTSQTTAATSDHVTINFITVKKKKK 400
NPPT SDH +++ VK+ K+
Sbjct: 177 NPPTQLPAFGMSDHFSVDLQPVKRSKR 203
>SB_13374| Best HMM Match : Cornifin (HMM E-Value=0.34)
Length = 1197
Score = 26.2 bits (55), Expect = 10.0
Identities = 18/40 (45%), Positives = 21/40 (52%)
Frame = -1
Query: 270 TVPLFPTQGGPRTSPRSHPASGPAGTPGSR*GTAVGRPPS 151
TVPL P TSP S PA+ P+ TPG+ T G S
Sbjct: 958 TVPLTPAA----TSPVS-PAAAPSTTPGAAPSTTPGAESS 992
>SB_830| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1390
Score = 26.2 bits (55), Expect = 10.0
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +2
Query: 257 NNGTVADNPEYYGFIIQPW 313
N GT +P+Y + IQPW
Sbjct: 715 NPGTAVVHPQYAAYSIQPW 733
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,393,872
Number of Sequences: 59808
Number of extensions: 283574
Number of successful extensions: 941
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 928
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 715479706
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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