Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00007
(402 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY241928-1|AAO85277.1| 806|Caenorhabditis elegans xylosyltransf... 30 0.54
AJ496235-1|CAD42732.1| 806|Caenorhabditis elegans peptide O-xyl... 30 0.54
AC025722-4|AAK68509.3| 806|Caenorhabditis elegans Squashed vulv... 30 0.54
Z81067-4|CAB02976.2| 632|Caenorhabditis elegans Hypothetical pr... 29 1.2
U53333-6|AAA96159.2| 304|Caenorhabditis elegans Collagen protei... 29 1.7
AF099925-3|AAC69507.1| 394|Caenorhabditis elegans Collagen prot... 28 2.2
U41994-9|AAK31523.1| 786|Caenorhabditis elegans Hypothetical pr... 28 2.9
U00056-1|AAN65308.2| 476|Caenorhabditis elegans Hypothetical pr... 27 3.8
Z68320-1|CAB63328.2| 278|Caenorhabditis elegans Hypothetical pr... 27 5.0
U40797-7|AAB37546.1| 195|Caenorhabditis elegans Hypothetical pr... 27 5.0
AF025460-2|AAF02169.3| 545|Caenorhabditis elegans Prion-like-(q... 27 5.0
AL132952-24|CAB61143.2| 351|Caenorhabditis elegans Hypothetical... 27 6.7
AF067607-9|AAF98609.1| 460|Caenorhabditis elegans Collagen prot... 27 6.7
Z82268-5|CAB05195.1| 304|Caenorhabditis elegans Hypothetical pr... 26 8.8
Z79694-6|CAB01958.1| 316|Caenorhabditis elegans Hypothetical pr... 26 8.8
Z79694-5|CAB01961.1| 316|Caenorhabditis elegans Hypothetical pr... 26 8.8
Z73972-2|CAA98258.1| 316|Caenorhabditis elegans Hypothetical pr... 26 8.8
Z73972-1|CAA98257.1| 316|Caenorhabditis elegans Hypothetical pr... 26 8.8
Z49907-2|CAA90084.1| 324|Caenorhabditis elegans Hypothetical pr... 26 8.8
Z46791-3|CAA86757.1| 323|Caenorhabditis elegans Hypothetical pr... 26 8.8
Z37139-8|CAA85487.1| 376|Caenorhabditis elegans Hypothetical pr... 26 8.8
X51623-1|CAA35955.1| 316|Caenorhabditis elegans collagen protein. 26 8.8
X51622-1|CAA35954.1| 316|Caenorhabditis elegans collagen protein. 26 8.8
J03146-1|AAA65468.1| 324|Caenorhabditis elegans collagen protein. 26 8.8
AF040655-7|AAB95044.2| 565|Caenorhabditis elegans Hypothetical ... 26 8.8
AC006722-2|AAK68422.1| 296|Caenorhabditis elegans Hypothetical ... 26 8.8
AC006645-7|AAF39840.1| 296|Caenorhabditis elegans Hypothetical ... 26 8.8
>AY241928-1|AAO85277.1| 806|Caenorhabditis elegans
xylosyltransferase protein.
Length = 806
Score = 30.3 bits (65), Expect = 0.54
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 162 DQQLFLIENREYRQGLKLDANVDWYG 239
D ++F I RE+ Q L++D DW G
Sbjct: 376 DNRMFRIGKREFPQNLRIDGGSDWVG 401
>AJ496235-1|CAD42732.1| 806|Caenorhabditis elegans peptide
O-xylosyltransferase protein.
Length = 806
Score = 30.3 bits (65), Expect = 0.54
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 162 DQQLFLIENREYRQGLKLDANVDWYG 239
D ++F I RE+ Q L++D DW G
Sbjct: 376 DNRMFRIGKREFPQNLRIDGGSDWVG 401
>AC025722-4|AAK68509.3| 806|Caenorhabditis elegans Squashed vulva
protein 6 protein.
Length = 806
Score = 30.3 bits (65), Expect = 0.54
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 162 DQQLFLIENREYRQGLKLDANVDWYG 239
D ++F I RE+ Q L++D DW G
Sbjct: 376 DNRMFRIGKREFPQNLRIDGGSDWVG 401
>Z81067-4|CAB02976.2| 632|Caenorhabditis elegans Hypothetical
protein F23A7.5 protein.
Length = 632
Score = 29.1 bits (62), Expect = 1.2
Identities = 14/22 (63%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = -3
Query: 253 HT-RRSPYQSTFASSFRPCRYS 191
HT R+ QSTF SSFRP +YS
Sbjct: 299 HTPRQEESQSTFGSSFRPSQYS 320
>U53333-6|AAA96159.2| 304|Caenorhabditis elegans Collagen protein
33 protein.
Length = 304
Score = 28.7 bits (61), Expect = 1.7
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = -1
Query: 264 PLFPTQGGPRTSPRSHPASGPAGTPGSR*GTAVGRPPSLG 145
PL P + GP+ P +GP G PG+ G G P S G
Sbjct: 217 PLIPGEPGPQGPPGPPGQAGPDGQPGAPGGP--GTPGSKG 254
>AF099925-3|AAC69507.1| 394|Caenorhabditis elegans Collagen protein
69 protein.
Length = 394
Score = 28.3 bits (60), Expect = 2.2
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = -1
Query: 264 PLFPTQGGPRTSPRSHPASGPAGTPG 187
P P Q GP P P GP GTPG
Sbjct: 260 PGLPGQCGPPGPPGYTPPPGPPGTPG 285
>U41994-9|AAK31523.1| 786|Caenorhabditis elegans Hypothetical
protein F59A6.3 protein.
Length = 786
Score = 27.9 bits (59), Expect = 2.9
Identities = 16/43 (37%), Positives = 19/43 (44%)
Frame = -1
Query: 252 TQGGPRTSPRSHPASGPAGTPGSR*GTAVGRPPSLGINTRCVS 124
T GP T+ SGP+ T GS T G + G N VS
Sbjct: 573 TTSGPSTTSGPSTTSGPSTTSGSTKSTTSGPSTTSGKNISTVS 615
>U00056-1|AAN65308.2| 476|Caenorhabditis elegans Hypothetical
protein R05H11.1 protein.
Length = 476
Score = 27.5 bits (58), Expect = 3.8
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = -3
Query: 196 YSRFSMRNSCWSPTFTGYKYQVCLF 122
Y RF SC F YKY C+F
Sbjct: 66 YMRFDDEKSCIGVYFEKYKYNACVF 90
>Z68320-1|CAB63328.2| 278|Caenorhabditis elegans Hypothetical
protein W07A12.5 protein.
Length = 278
Score = 27.1 bits (57), Expect = 5.0
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Frame = -1
Query: 276 SATVPLFPTQGGPRTSPRSHPASGPAGTPGSR*GTAV-GRPPSLG 145
S +P P + GP A+GP G PG G + G P +G
Sbjct: 211 SVGLPGIPGKPGPSGPDGKIGATGPGGDPGKPGGNGIPGEPGPIG 255
>U40797-7|AAB37546.1| 195|Caenorhabditis elegans Hypothetical
protein C28C12.3 protein.
Length = 195
Score = 27.1 bits (57), Expect = 5.0
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -1
Query: 246 GGPRTSPRSHPASGPAG 196
GGPR PR P GP G
Sbjct: 177 GGPRDGPRGGPRGGPRG 193
>AF025460-2|AAF02169.3| 545|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 41
protein.
Length = 545
Score = 27.1 bits (57), Expect = 5.0
Identities = 17/52 (32%), Positives = 22/52 (42%)
Frame = -1
Query: 255 PTQGGPRTSPRSHPASGPAGTPGSR*GTAVGRPPSLGINTRCVSSHWNRSIP 100
PT +S + PAS PA G+ G S +T SSH +S P
Sbjct: 21 PTDIQSTSSSSAAPASAPAPRAGAGAGATSSSAASSSTSTPSSSSHHKKSSP 72
>AL132952-24|CAB61143.2| 351|Caenorhabditis elegans Hypothetical
protein Y51H4A.9 protein.
Length = 351
Score = 26.6 bits (56), Expect = 6.7
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -1
Query: 243 GPRTSPRSHPASGPAGTPGSR*GTAVGRPP 154
GP +P SG G PG G+A+ PP
Sbjct: 214 GPSGAPGQKGPSGAPGAPGQSGGSALPGPP 243
>AF067607-9|AAF98609.1| 460|Caenorhabditis elegans Collagen protein
102 protein.
Length = 460
Score = 26.6 bits (56), Expect = 6.7
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = -1
Query: 255 PTQGGPRTSPRSHPASGPAGTPGSR*GTAVGRPPSLG 145
P GP P + + G AG PG++ A G P G
Sbjct: 179 PGPPGPDGKPGAAGSDGEAGAPGTKTTNAPGEPGPAG 215
>Z82268-5|CAB05195.1| 304|Caenorhabditis elegans Hypothetical
protein F52B11.4 protein.
Length = 304
Score = 26.2 bits (55), Expect = 8.8
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = -1
Query: 276 SATVPLFPTQGGPRTSPRSHPASGPAGTPGSR*GTAVGRPPSLG 145
S ++P P Q GP+ P GPAG+PG+ G G+P + G
Sbjct: 215 SESIPGAPGQAGPQGPP------GPAGSPGAPGGP--GQPGAPG 250
>Z79694-6|CAB01958.1| 316|Caenorhabditis elegans Hypothetical
protein C15A11.6 protein.
Length = 316
Score = 26.2 bits (55), Expect = 8.8
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = -1
Query: 264 PLFPTQGGPRTSPRSHPASGPAGTPGSR*GTAVGRPPSLG 145
P P QGG + P +G AG+PG A G P S G
Sbjct: 159 PGAPAQGGGQGPPGPPGPAGSAGSPGQ--AGAPGNPGSPG 196
>Z79694-5|CAB01961.1| 316|Caenorhabditis elegans Hypothetical
protein C15A11.5 protein.
Length = 316
Score = 26.2 bits (55), Expect = 8.8
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = -1
Query: 264 PLFPTQGGPRTSPRSHPASGPAGTPGSR*GTAVGRPPSLG 145
P P QGG + P +G AG+PG A G P S G
Sbjct: 159 PGAPAQGGGQGPPGPPGPAGSAGSPGQ--AGAPGNPGSPG 196
>Z73972-2|CAA98258.1| 316|Caenorhabditis elegans Hypothetical
protein F15H10.2 protein.
Length = 316
Score = 26.2 bits (55), Expect = 8.8
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = -1
Query: 243 GPRTSPRSHPASGPAGTPGSR*GTAVGRPP 154
GP +P SG G PG G A+ PP
Sbjct: 179 GPSGAPGQKGPSGAPGAPGQSGGAALPGPP 208
>Z73972-1|CAA98257.1| 316|Caenorhabditis elegans Hypothetical
protein F15H10.1 protein.
Length = 316
Score = 26.2 bits (55), Expect = 8.8
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = -1
Query: 243 GPRTSPRSHPASGPAGTPGSR*GTAVGRPP 154
GP +P SG G PG G A+ PP
Sbjct: 179 GPSGAPGQKGPSGAPGAPGQSGGAALPGPP 208
>Z49907-2|CAA90084.1| 324|Caenorhabditis elegans Hypothetical
protein B0491.2 protein.
Length = 324
Score = 26.2 bits (55), Expect = 8.8
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +2
Query: 110 RFQ*EETHLVFIPSEGGRPTAVPHREPGVP 199
R Q EET+ P G P+A P + P VP
Sbjct: 68 RRQYEETNATPTPHADGSPSAPPGQPPAVP 97
>Z46791-3|CAA86757.1| 323|Caenorhabditis elegans Hypothetical
protein C09G5.4 protein.
Length = 323
Score = 26.2 bits (55), Expect = 8.8
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -1
Query: 255 PTQGGPRTSPRSHPASGPAGTPGSR*GT-AVGRPPSLG 145
P Q G R RSH GP+G PG + + A G+P G
Sbjct: 191 PGQAG-RGGQRSHGLPGPSGAPGPQGPSGAPGQPGQSG 227
>Z37139-8|CAA85487.1| 376|Caenorhabditis elegans Hypothetical
protein C14B1.4 protein.
Length = 376
Score = 26.2 bits (55), Expect = 8.8
Identities = 17/46 (36%), Positives = 18/46 (39%), Gaps = 4/46 (8%)
Frame = -1
Query: 270 TVPLFPTQGG----PRTSPRSHPASGPAGTPGSR*GTAVGRPPSLG 145
TVP P G P TSP S S P GTP P + G
Sbjct: 23 TVPNAPDGGSSAPAPSTSPNSISPSNPTGTPAPGASAQTPNPNAAG 68
>X51623-1|CAA35955.1| 316|Caenorhabditis elegans collagen protein.
Length = 316
Score = 26.2 bits (55), Expect = 8.8
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = -1
Query: 243 GPRTSPRSHPASGPAGTPGSR*GTAVGRPP 154
GP +P SG G PG G A+ PP
Sbjct: 179 GPSGAPGQKGPSGAPGAPGQSGGAALPGPP 208
>X51622-1|CAA35954.1| 316|Caenorhabditis elegans collagen protein.
Length = 316
Score = 26.2 bits (55), Expect = 8.8
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = -1
Query: 243 GPRTSPRSHPASGPAGTPGSR*GTAVGRPP 154
GP +P SG G PG G A+ PP
Sbjct: 179 GPSGAPGQKGPSGAPGAPGQSGGAALPGPP 208
>J03146-1|AAA65468.1| 324|Caenorhabditis elegans collagen protein.
Length = 324
Score = 26.2 bits (55), Expect = 8.8
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +2
Query: 110 RFQ*EETHLVFIPSEGGRPTAVPHREPGVP 199
R Q EET+ P G P+A P + P VP
Sbjct: 68 RRQYEETNATPTPHADGSPSAPPGQPPAVP 97
>AF040655-7|AAB95044.2| 565|Caenorhabditis elegans Hypothetical
protein T24E12.9 protein.
Length = 565
Score = 26.2 bits (55), Expect = 8.8
Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Frame = -1
Query: 270 TVPL----FPTQGGPRTSPRSHPASGPAGTPGSR*GTAVGRPPSLGINT 136
T+PL F TQG PR +S P SR GRP + G +T
Sbjct: 394 TIPLLLSQFSTQGSSSFEPRRGVSSAPDHATSSRYCHKFGRPDAPGPST 442
>AC006722-2|AAK68422.1| 296|Caenorhabditis elegans Hypothetical
protein Y19D10A.9 protein.
Length = 296
Score = 26.2 bits (55), Expect = 8.8
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -1
Query: 258 FPTQGGPRTSPRSHPASGPAGTP 190
FP GGP SP +PASG P
Sbjct: 205 FPVSGGPSDSP-IYPASGATDEP 226
>AC006645-7|AAF39840.1| 296|Caenorhabditis elegans Hypothetical
protein F56A4.2 protein.
Length = 296
Score = 26.2 bits (55), Expect = 8.8
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -1
Query: 258 FPTQGGPRTSPRSHPASGPAGTP 190
FP GGP SP +PASG P
Sbjct: 205 FPVSGGPSDSP-IYPASGATDEP 226
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,001,746
Number of Sequences: 27780
Number of extensions: 204835
Number of successful extensions: 1018
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1001
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 630384202
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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