Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00007
         (402 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g47010.1 68418.m05794 RNA helicase, putative similar to type ...    31   0.22 
At5g14540.1 68418.m01704 proline-rich family protein contains pr...    29   1.2  
At5g51300.2 68418.m06360 splicing factor-related contains simila...    27   3.5  
At5g51300.1 68418.m06359 splicing factor-related contains simila...    27   3.5  
At3g09090.1 68416.m01069 defective in exine formation protein (D...    27   4.7  
At5g44150.1 68418.m05403 expressed protein                             27   6.2  
At2g15640.1 68415.m01791 F-box family protein contains Pfam PF00...    27   6.2  
At5g47850.1 68418.m05912 protein kinase, putative contains simil...    26   8.2  
At5g44520.1 68418.m05454 ribose 5-phosphate isomerase-related lo...    26   8.2  
At5g25860.1 68418.m03068 F-box family protein contains F-box dom...    26   8.2  
At3g44340.1 68416.m04764 sec23/sec24 transport family protein co...    26   8.2  

>At5g47010.1 68418.m05794 RNA helicase, putative similar to type 1 RNA
            helicase pNORF1 [Homo sapiens] GI:1885356
          Length = 1254

 Score = 31.5 bits (68), Expect = 0.22
 Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
 Frame = -1

Query: 267  VPLFPTQGGPRTSPRSHPASGPAGT------PGSR*GTAVGRPPSLG 145
            VPL P  GGP + P + P  GP G       PG+  G   GR  S+G
Sbjct: 1002 VPLSPFPGGPPSQPYAIPTRGPVGAVPHAPQPGNH-GFGAGRGTSVG 1047


>At5g14540.1 68418.m01704 proline-rich family protein contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 547

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = -1

Query: 285 SGLSATVPLFPTQGGPRTSPRSHPASGPAGT-PGSR*GTAVGRPPSL 148
           SG +   P +P Q  P   PR  P+  P G+ P  +   A   PPS+
Sbjct: 349 SGYNPEEPPYPQQSYPPNPPRQPPSHPPPGSAPSQQYYNAPPTPPSM 395


>At5g51300.2 68418.m06360 splicing factor-related contains
           similarity to SF1 protein [Drosophila melanogaster]
           GI:6687400
          Length = 804

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 14/51 (27%), Positives = 19/51 (37%)
 Frame = +2

Query: 188 PGVPAGPEAGCERGLVRGPPCVGNNGTVADNPEYYGFIIQPWQ*NPPTSQT 340
           P  P  P +  +     G     NN +V+      G +  PW  NPP   T
Sbjct: 713 PPTPPAPASSTDHSQNMGNMPWANNPSVSTPDHSQGLVNAPWAPNPPMPPT 763


>At5g51300.1 68418.m06359 splicing factor-related contains
           similarity to SF1 protein [Drosophila melanogaster]
           GI:6687400
          Length = 804

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 14/51 (27%), Positives = 19/51 (37%)
 Frame = +2

Query: 188 PGVPAGPEAGCERGLVRGPPCVGNNGTVADNPEYYGFIIQPWQ*NPPTSQT 340
           P  P  P +  +     G     NN +V+      G +  PW  NPP   T
Sbjct: 713 PPTPPAPASSTDHSQNMGNMPWANNPSVSTPDHSQGLVNAPWAPNPPMPPT 763


>At3g09090.1 68416.m01069 defective in exine formation protein
           (DEX1) identical to defective in exine formation
           [Arabidopsis thaliana] gi|11138669|gb|AAG31444; contains
           Pfam domain PF01839: FG-GAP repeat
          Length = 896

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +3

Query: 21  FKILNTEHEMYLKLDVNVDSYGDRKTWGSNDSSEKRH 131
           F++L    E+  +   + D Y D K WG  +  E +H
Sbjct: 373 FELLRENDELADEYSYDYDDYVDEKMWGDEEWVEGQH 409


>At5g44150.1 68418.m05403 expressed protein 
          Length = 355

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 17/57 (29%), Positives = 24/57 (42%)
 Frame = +3

Query: 60  LDVNVDSYGDRKTWGSNDSSEKRHTWYLYPVKVGDQQLFLIENREYRQGLKLDANVD 230
           L  N D Y D     + DSS   H+  + P   G   L LI   +     K++ N+D
Sbjct: 57  LPSNWDRYDDELD-AAEDSSISLHSDVIVPKSKGADYLHLISEAQAESNSKIENNLD 112


>At2g15640.1 68415.m01791 F-box family protein contains Pfam
           PF00646: F-box domain; contains TIGRFAM TIGR01640 :
           F-box protein interaction domain
          Length = 426

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 10/48 (20%), Positives = 27/48 (56%)
 Frame = +3

Query: 3   ENNNVIFKILNTEHEMYLKLDVNVDSYGDRKTWGSNDSSEKRHTWYLY 146
           E++  I+K+  ++ + Y++ ++N D   + + W   D  +++ + Y Y
Sbjct: 279 EDDVDIYKLYYSDVDEYVEYNINDDDINELRVWVLEDVKKQQWSKYAY 326


>At5g47850.1 68418.m05912 protein kinase, putative contains
           similarity to cytokinin-regulated kinase 1 [Nicotiana
           tabacum] gi|10998537|gb|AAG25966; contains protein
           kinase domain, Pfam:PF00069
          Length = 751

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -3

Query: 220 ASSFRPCRYSRFSMRNSCWSPTF 152
           A +FR C   R S R  CW P +
Sbjct: 130 AGNFRICGVERVSRRLRCWQPYY 152


>At5g44520.1 68418.m05454 ribose 5-phosphate isomerase-related low
           similarity to SP|P47968 Ribose 5-phosphate isomerase (EC
           5.3.1.6) (Phosphoriboisomerase) {Mus musculus}
          Length = 296

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +3

Query: 150 VKVGDQQLFLIENREYRQGLK 212
           VKV D+ +F+I+  +Y+ GL+
Sbjct: 152 VKVADEAVFMIKEEQYKAGLE 172


>At5g25860.1 68418.m03068 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 448

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = -3

Query: 217 SSFRPCRYSRFSMRNS 170
           S F PCRYSR S  NS
Sbjct: 263 SGFAPCRYSRTSYLNS 278


>At3g44340.1 68416.m04764 sec23/sec24 transport family protein
           contains Pfam domains PF04811: Sec23/Sec24 trunk domain,
           PF04815: Sec23/Sec24 helical domain and PF04810:
           Sec23/Sec24 zinc finger
          Length = 1096

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 7/58 (12%)
 Frame = -1

Query: 297 KP*YSGLSATVPL------FPTQGGPRTSPRSHPASG-PAGTPGSR*GTAVGRPPSLG 145
           +P + G  +T PL      FP  GG    P S P  G P+G P        G PP +G
Sbjct: 122 QPPFGGRPSTGPLVGGGSSFPQPGG---FPASGPPGGVPSGPPSGARPIGFGSPPPMG 176


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,557,966
Number of Sequences: 28952
Number of extensions: 187505
Number of successful extensions: 621
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 585758608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)