Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00005
         (650 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    24   1.5  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    23   2.6  
AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    23   2.6  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    23   2.6  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   7.8  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   7.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   7.8  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    21   7.8  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 8/31 (25%), Positives = 16/31 (51%)
 Frame = +2

Query: 521 VHRALKFSAVSVLHPCQFMIYVQWLSSAVHR 613
           + R   +  + V  PC  ++ + W+S  +HR
Sbjct: 240 LQRHTGYFLIQVYVPCVLIVVLSWVSFWIHR 270


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +3

Query: 33  TLFNYKHDFSLHLIAITNIKSK*FFLTYFDIPELT 137
           T++    +F   L +  + K + FF+T FD+  LT
Sbjct: 359 TMYVLSDNFQQLLFSKYDAKKRNFFITMFDLDFLT 393


>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
 Frame = +1

Query: 505 PNLF--TSTQSSKVLSSFGTSSVSIYDIRPMALVSSTSNNCY 624
           P +F   +   ++ +S  GT+   I D+    LV+  S  CY
Sbjct: 32  PEVFDLVAEDKARCMSEHGTTQAQIDDVDKGNLVNEPSITCY 73


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
 Frame = +1

Query: 505 PNLF--TSTQSSKVLSSFGTSSVSIYDIRPMALVSSTSNNCY 624
           P +F   +   ++ +S  GT+   I D+    LV+  S  CY
Sbjct: 32  PEVFDLVAEDKARCMSEHGTTQAQIDDVDKGNLVNEPSITCY 73


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 6/24 (25%), Positives = 12/24 (50%)
 Frame = +2

Query: 527 RALKFSAVSVLHPCQFMIYVQWLS 598
           R   +  + +  PC  ++ V W+S
Sbjct: 239 REFSYYLIQIYIPCCMLVIVSWVS 262


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 6/24 (25%), Positives = 12/24 (50%)
 Frame = +2

Query: 527 RALKFSAVSVLHPCQFMIYVQWLS 598
           R   +  + +  PC  ++ V W+S
Sbjct: 239 REFSYYLIQIYIPCCMLVIVSWVS 262


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = -3

Query: 435 NGTGGKSIYGRTFSD-ENFKLKH 370
           NG+G +SI  RTF+   N ++ H
Sbjct: 826 NGSGIESIQNRTFNGLNNLQILH 848


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 420 KSIYGRTFSDENFKL 376
           K IYG  F+D NF++
Sbjct: 385 KVIYGFDFNDVNFRI 399


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,671
Number of Sequences: 438
Number of extensions: 4647
Number of successful extensions: 18
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)