Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00004
(579 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF506023-1|AAM46899.1| 76|Tribolium castaneum polyubiquitin pr... 117 8e-29
AF506022-1|AAM46898.1| 685|Tribolium castaneum polyubiquitin pr... 117 8e-29
AF506021-1|AAM46897.1| 64|Tribolium castaneum polyubiquitin pr... 115 3e-28
AF506020-1|AAM46896.1| 112|Tribolium castaneum polyubiquitin pr... 112 2e-27
EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic acetyl... 25 0.61
EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic acetyl... 25 0.61
EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic acetyl... 24 1.1
EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic acetyl... 24 1.1
EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic acetyl... 24 1.1
AM292344-1|CAL23156.1| 291|Tribolium castaneum gustatory recept... 24 1.1
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ... 22 4.3
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ... 22 4.3
DQ342040-1|ABC69932.1| 822|Tribolium castaneum STIP protein. 21 7.6
>AF506023-1|AAM46899.1| 76|Tribolium castaneum polyubiquitin
protein.
Length = 76
Score = 117 bits (281), Expect = 8e-29
Identities = 58/68 (85%), Positives = 61/68 (89%), Gaps = 2/68 (2%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL--YG 181
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL Y
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 182 LQYPEGIH 205
+Q +H
Sbjct: 61 IQKESTLH 68
Score = 31.5 bits (68), Expect = 0.005
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = +3
Query: 177 TDYNIQKESTLHLV 218
+DYNIQKESTLHLV
Sbjct: 57 SDYNIQKESTLHLV 70
>AF506022-1|AAM46898.1| 685|Tribolium castaneum polyubiquitin
protein.
Length = 685
Score = 117 bits (281), Expect = 8e-29
Identities = 58/68 (85%), Positives = 61/68 (89%), Gaps = 2/68 (2%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL--YG 181
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL Y
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 182 LQYPEGIH 205
+Q +H
Sbjct: 61 IQKESTLH 68
Score = 117 bits (281), Expect = 8e-29
Identities = 58/68 (85%), Positives = 61/68 (89%), Gaps = 2/68 (2%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL--YG 181
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL Y
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
Query: 182 LQYPEGIH 205
+Q +H
Sbjct: 137 IQKESTLH 144
Score = 117 bits (281), Expect = 8e-29
Identities = 58/68 (85%), Positives = 61/68 (89%), Gaps = 2/68 (2%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL--YG 181
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL Y
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
Query: 182 LQYPEGIH 205
+Q +H
Sbjct: 213 IQKESTLH 220
Score = 117 bits (281), Expect = 8e-29
Identities = 58/68 (85%), Positives = 61/68 (89%), Gaps = 2/68 (2%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL--YG 181
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL Y
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288
Query: 182 LQYPEGIH 205
+Q +H
Sbjct: 289 IQKESTLH 296
Score = 117 bits (281), Expect = 8e-29
Identities = 58/68 (85%), Positives = 61/68 (89%), Gaps = 2/68 (2%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL--YG 181
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL Y
Sbjct: 305 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364
Query: 182 LQYPEGIH 205
+Q +H
Sbjct: 365 IQKESTLH 372
Score = 117 bits (281), Expect = 8e-29
Identities = 58/68 (85%), Positives = 61/68 (89%), Gaps = 2/68 (2%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL--YG 181
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL Y
Sbjct: 457 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 516
Query: 182 LQYPEGIH 205
+Q +H
Sbjct: 517 IQKESTLH 524
Score = 117 bits (281), Expect = 8e-29
Identities = 58/68 (85%), Positives = 61/68 (89%), Gaps = 2/68 (2%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL--YG 181
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL Y
Sbjct: 533 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 592
Query: 182 LQYPEGIH 205
+Q +H
Sbjct: 593 IQKESTLH 600
Score = 117 bits (281), Expect = 8e-29
Identities = 58/68 (85%), Positives = 61/68 (89%), Gaps = 2/68 (2%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL--YG 181
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL Y
Sbjct: 609 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 668
Query: 182 LQYPEGIH 205
+Q +H
Sbjct: 669 IQKESTLH 676
Score = 114 bits (275), Expect = 4e-28
Identities = 57/68 (83%), Positives = 60/68 (88%), Gaps = 2/68 (2%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL--YG 181
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQR IFAGKQLEDGRTL Y
Sbjct: 381 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRSIFAGKQLEDGRTLSDYN 440
Query: 182 LQYPEGIH 205
+Q +H
Sbjct: 441 IQKESTLH 448
Score = 31.5 bits (68), Expect = 0.005
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = +3
Query: 177 TDYNIQKESTLHLV 218
+DYNIQKESTLHLV
Sbjct: 57 SDYNIQKESTLHLV 70
Score = 31.5 bits (68), Expect = 0.005
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = +3
Query: 177 TDYNIQKESTLHLV 218
+DYNIQKESTLHLV
Sbjct: 133 SDYNIQKESTLHLV 146
Score = 31.5 bits (68), Expect = 0.005
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = +3
Query: 177 TDYNIQKESTLHLV 218
+DYNIQKESTLHLV
Sbjct: 209 SDYNIQKESTLHLV 222
Score = 31.5 bits (68), Expect = 0.005
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = +3
Query: 177 TDYNIQKESTLHLV 218
+DYNIQKESTLHLV
Sbjct: 285 SDYNIQKESTLHLV 298
Score = 31.5 bits (68), Expect = 0.005
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = +3
Query: 177 TDYNIQKESTLHLV 218
+DYNIQKESTLHLV
Sbjct: 361 SDYNIQKESTLHLV 374
Score = 31.5 bits (68), Expect = 0.005
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = +3
Query: 177 TDYNIQKESTLHLV 218
+DYNIQKESTLHLV
Sbjct: 437 SDYNIQKESTLHLV 450
Score = 31.5 bits (68), Expect = 0.005
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = +3
Query: 177 TDYNIQKESTLHLV 218
+DYNIQKESTLHLV
Sbjct: 513 SDYNIQKESTLHLV 526
Score = 31.5 bits (68), Expect = 0.005
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = +3
Query: 177 TDYNIQKESTLHLV 218
+DYNIQKESTLHLV
Sbjct: 589 SDYNIQKESTLHLV 602
Score = 31.5 bits (68), Expect = 0.005
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = +3
Query: 177 TDYNIQKESTLHLV 218
+DYNIQKESTLHLV
Sbjct: 665 SDYNIQKESTLHLV 678
>AF506021-1|AAM46897.1| 64|Tribolium castaneum polyubiquitin
protein.
Length = 64
Score = 115 bits (276), Expect = 3e-28
Identities = 57/62 (91%), Positives = 59/62 (95%), Gaps = 2/62 (3%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL--YG 181
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL Y
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 182 LQ 187
+Q
Sbjct: 61 IQ 62
>AF506020-1|AAM46896.1| 112|Tribolium castaneum polyubiquitin
protein.
Length = 112
Score = 112 bits (270), Expect = 2e-27
Identities = 56/62 (90%), Positives = 58/62 (93%), Gaps = 2/62 (3%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL--YG 181
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQR IFAGKQLEDGRTL Y
Sbjct: 49 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRSIFAGKQLEDGRTLSDYN 108
Query: 182 LQ 187
+Q
Sbjct: 109 IQ 110
Score = 62.5 bits (145), Expect = 3e-12
Identities = 30/40 (75%), Positives = 33/40 (82%), Gaps = 2/40 (5%)
Frame = +2
Query: 92 KIQDKEGIPPNQQRLIFAGKQLEDGRTL--YGLQYPEGIH 205
KIQDKEGIPP+QQRLIFAGKQLEDGRTL Y +Q +H
Sbjct: 1 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 40
Score = 31.5 bits (68), Expect = 0.005
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = +3
Query: 177 TDYNIQKESTLHLV 218
+DYNIQKESTLHLV
Sbjct: 29 SDYNIQKESTLHLV 42
>EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
4 protein.
Length = 311
Score = 24.6 bits (51), Expect = 0.61
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -3
Query: 514 SSASVPYRLEGTYLFVVVFEDHRAVTLPAVVTVLHHR 404
+S +VP L GTY ++F +V L VV HHR
Sbjct: 267 TSDAVP--LIGTYFNCIMFMVASSVVLTVVVLNYHHR 301
>EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
1 protein.
Length = 311
Score = 24.6 bits (51), Expect = 0.61
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -3
Query: 514 SSASVPYRLEGTYLFVVVFEDHRAVTLPAVVTVLHHR 404
+S +VP L GTY ++F +V L VV HHR
Sbjct: 267 TSDAVP--LIGTYFNCIMFMVASSVVLTVVVLNYHHR 301
>EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
5 protein.
Length = 311
Score = 23.8 bits (49), Expect = 1.1
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -3
Query: 490 LEGTYLFVVVFEDHRAVTLPAVVTVLHHR 404
L GTY ++F +V L VV HHR
Sbjct: 273 LLGTYFNCIMFMVASSVVLTVVVLNYHHR 301
>EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
3 protein.
Length = 311
Score = 23.8 bits (49), Expect = 1.1
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -3
Query: 490 LEGTYLFVVVFEDHRAVTLPAVVTVLHHR 404
L GTY ++F +V L VV HHR
Sbjct: 273 LLGTYFNCIMFMVASSVVLTVVVLNYHHR 301
>EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
2 protein.
Length = 311
Score = 23.8 bits (49), Expect = 1.1
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -3
Query: 490 LEGTYLFVVVFEDHRAVTLPAVVTVLHHR 404
L GTY ++F +V L VV HHR
Sbjct: 273 LLGTYFNCIMFMVASSVVLTVVVLNYHHR 301
>AM292344-1|CAL23156.1| 291|Tribolium castaneum gustatory receptor
candidate 23 protein.
Length = 291
Score = 23.8 bits (49), Expect = 1.1
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -1
Query: 381 CSPVHSRRRRWILPFSSTL*NLRTASLTFFFLCLIF 274
C P S R + + FS+T L A +TF + L F
Sbjct: 253 CRPTFSAARFYGIDFSNTFLGLVGAVVTFLIVLLQF 288
>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
protein.
Length = 1464
Score = 21.8 bits (44), Expect = 4.3
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = +2
Query: 104 KEGIPPNQQRLIFAGKQLEDGRTLYGLQYPEG 199
K+ + QQR+ A ++ R L+YP G
Sbjct: 1416 KKSLAYVQQRMSIAPNRVSQARPSVQLRYPNG 1447
>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
protein.
Length = 1464
Score = 21.8 bits (44), Expect = 4.3
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = +2
Query: 104 KEGIPPNQQRLIFAGKQLEDGRTLYGLQYPEG 199
K+ + QQR+ A ++ R L+YP G
Sbjct: 1416 KKSLAYVQQRMSIAPNRVSQARPSVQLRYPNG 1447
>DQ342040-1|ABC69932.1| 822|Tribolium castaneum STIP protein.
Length = 822
Score = 21.0 bits (42), Expect = 7.6
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = +2
Query: 167 RTLYGLQYPEGIHPPPGVE 223
R L G G+ PPGVE
Sbjct: 281 RVLSGYHALSGLKAPPGVE 299
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,849
Number of Sequences: 336
Number of extensions: 2641
Number of successful extensions: 35
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14412858
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -