Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00004
         (579 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L36067-1|AAA29362.1|  229|Anopheles gambiae polyubiquitin protein.    117   3e-28
AY705401-1|AAU12510.1|  490|Anopheles gambiae nicotinic acetylch...    27   0.58 
AB097148-2|BAC82628.1| 1077|Anopheles gambiae pol-like protein p...    25   2.3  
AY705400-1|AAU12509.1|  490|Anopheles gambiae nicotinic acetylch...    24   4.1  
X95912-1|CAA65156.1|  696|Anopheles gambiae immune factor protein.     23   7.2  
EF990671-1|ABS30732.1| 1256|Anopheles gambiae voltage-gated calc...    23   9.5  

>L36067-1|AAA29362.1|  229|Anopheles gambiae polyubiquitin protein.
          Length = 229

 Score =  117 bits (281), Expect = 3e-28
 Identities = 58/68 (85%), Positives = 61/68 (89%), Gaps = 2/68 (2%)
 Frame = +2

Query: 8   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL--YG 181
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL  Y 
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 182 LQYPEGIH 205
           +Q    +H
Sbjct: 61  IQKESTLH 68



 Score =  117 bits (281), Expect = 3e-28
 Identities = 58/68 (85%), Positives = 61/68 (89%), Gaps = 2/68 (2%)
 Frame = +2

Query: 8   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL--YG 181
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL  Y 
Sbjct: 77  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136

Query: 182 LQYPEGIH 205
           +Q    +H
Sbjct: 137 IQKESTLH 144



 Score =  117 bits (281), Expect = 3e-28
 Identities = 58/68 (85%), Positives = 61/68 (89%), Gaps = 2/68 (2%)
 Frame = +2

Query: 8   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL--YG 181
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL  Y 
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212

Query: 182 LQYPEGIH 205
           +Q    +H
Sbjct: 213 IQKESTLH 220



 Score = 31.5 bits (68), Expect = 0.020
 Identities = 13/14 (92%), Positives = 14/14 (100%)
 Frame = +3

Query: 177 TDYNIQKESTLHLV 218
           +DYNIQKESTLHLV
Sbjct: 57  SDYNIQKESTLHLV 70



 Score = 31.5 bits (68), Expect = 0.020
 Identities = 13/14 (92%), Positives = 14/14 (100%)
 Frame = +3

Query: 177 TDYNIQKESTLHLV 218
           +DYNIQKESTLHLV
Sbjct: 133 SDYNIQKESTLHLV 146



 Score = 31.5 bits (68), Expect = 0.020
 Identities = 13/14 (92%), Positives = 14/14 (100%)
 Frame = +3

Query: 177 TDYNIQKESTLHLV 218
           +DYNIQKESTLHLV
Sbjct: 209 SDYNIQKESTLHLV 222


>AY705401-1|AAU12510.1|  490|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 6 protein.
          Length = 490

 Score = 26.6 bits (56), Expect = 0.58
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = -3

Query: 562 LSSDTVSRFYLKSII-HSSASVPYRLEGTYLFVVVFEDHRAVTLPAVVTVLHHR 404
           L S TV    +  +I  +S +VP  L GTY   ++F    +V L  VV   HHR
Sbjct: 270 LVSQTVFSLLVGHVITKTSEAVP--LLGTYFNCIMFMVASSVVLTVVVLNYHHR 321


>AB097148-2|BAC82628.1| 1077|Anopheles gambiae pol-like protein
           protein.
          Length = 1077

 Score = 24.6 bits (51), Expect = 2.3
 Identities = 16/61 (26%), Positives = 33/61 (54%)
 Frame = -3

Query: 571 FFFLSSDTVSRFYLKSIIHSSASVPYRLEGTYLFVVVFEDHRAVTLPAVVTVLHHRHEHS 392
           F +++S + SR       + S+S+  +L  T + V+ F DH+A+T+   +    +R  ++
Sbjct: 189 FSYITSGSGSRI---DRCYVSSSLETQLRTTDMHVLSFSDHKALTVRLCLPTPPNRLTNN 245

Query: 391 G 389
           G
Sbjct: 246 G 246


>AY705400-1|AAU12509.1|  490|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 6 protein.
          Length = 490

 Score = 23.8 bits (49), Expect = 4.1
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -3

Query: 490 LEGTYLFVVVFEDHRAVTLPAVVTVLHHR 404
           L GTY   ++F    +V L  VV   HHR
Sbjct: 293 LLGTYFNCIMFMVASSVVLTVVVLNYHHR 321


>X95912-1|CAA65156.1|  696|Anopheles gambiae immune factor protein.
          Length = 696

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +1

Query: 241 RNARRELLHTQEDQAQEEEGQTSRPQVLQGR 333
           + A + LL TQ+ Q Q+++ Q  + Q  QG+
Sbjct: 640 QQAIKALLATQQLQQQQQQQQQQQQQQQQGQ 670


>EF990671-1|ABS30732.1| 1256|Anopheles gambiae voltage-gated calcium
           channel alpha2-delta subunit 1 protein.
          Length = 1256

 Score = 22.6 bits (46), Expect = 9.5
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -3

Query: 463 VFEDHRAVTLPAVVTVLHHRHE 398
           +F DHR    PA V  L   HE
Sbjct: 903 IFIDHRGHKAPAAVVGLQFLHE 924


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 590,487
Number of Sequences: 2352
Number of extensions: 12345
Number of successful extensions: 48
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 55086417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)