Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00004
         (579 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          26   0.23 
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      26   0.23 
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    25   0.54 
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    25   0.54 
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    25   0.54 
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    24   1.2  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    24   1.2  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    24   1.2  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   2.9  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   6.7  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   6.7  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   6.7  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   8.8  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 26.2 bits (55), Expect = 0.23
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -3

Query: 574 FFFFLSSDTVSRFYLKSIIHSSASVPY 494
           F+FFL    ++R+YL+ + +    V Y
Sbjct: 257 FYFFLHKQVLNRYYLERLSNDMGEVSY 283


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 26.2 bits (55), Expect = 0.23
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -3

Query: 574 FFFFLSSDTVSRFYLKSIIHSSASVPY 494
           F+FFL    ++R+YL+ + +    V Y
Sbjct: 257 FYFFLHKQVLNRYYLERLSNDMGEVSY 283


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 25.0 bits (52), Expect = 0.54
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -3

Query: 529 KSIIHSSASVPYRLEGTYLFVVVFEDHRAVTLPAVVTVLHHR 404
           +S+  +S +VP  L G+Y   ++F    +V L  +V + HHR
Sbjct: 245 ESMPTTSDAVP--LIGSYFNCIMFMVASSVVLTVLVLIFHHR 284


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 25.0 bits (52), Expect = 0.54
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -3

Query: 529 KSIIHSSASVPYRLEGTYLFVVVFEDHRAVTLPAVVTVLHHR 404
           +S+  +S +VP  L G+Y   ++F    +V L  +V + HHR
Sbjct: 245 ESMPTTSDAVP--LIGSYFNCIMFMVASSVVLTVLVLIFHHR 284


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 25.0 bits (52), Expect = 0.54
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -3

Query: 529 KSIIHSSASVPYRLEGTYLFVVVFEDHRAVTLPAVVTVLHHR 404
           +S+  +S +VP  L G+Y   ++F    +V L  +V + HHR
Sbjct: 245 ESMPTTSDAVP--LIGSYFNCIMFMVASSVVLTVLVLIFHHR 284


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 490 LEGTYLFVVVFEDHRAVTLPAVVTVLHHR 404
           L G+Y   ++F    +V L  +V + HHR
Sbjct: 256 LLGSYFNCIMFMVASSVVLTVLVLIFHHR 284


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 490 LEGTYLFVVVFEDHRAVTLPAVVTVLHHR 404
           L G+Y   ++F    +V L  +V + HHR
Sbjct: 256 LLGSYFNCIMFMVASSVVLTVLVLIFHHR 284


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 490 LEGTYLFVVVFEDHRAVTLPAVVTVLHHR 404
           L G+Y   ++F    +V L  +V + HHR
Sbjct: 256 LLGSYFNCIMFMVASSVVLTVLVLIFHHR 284


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -3

Query: 529 KSIIHSSASVPYRLEGTYLFVVVFEDHRAVTLPAVVTVLHHR 404
           +S+  +S +VP  L G+Y   ++F    +V L  +V   HHR
Sbjct: 313 ESMPTTSDAVP--LIGSYFNCIMFMVASSVVLTVLVLNFHHR 352


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 7/27 (25%), Positives = 17/27 (62%)
 Frame = -1

Query: 312 TASLTFFFLCLIFLGVE*FSSCVS*RH 232
           ++S++F+  C++ LG+     C + +H
Sbjct: 196 SSSISFYVPCIVMLGIYCRLYCYAQKH 222


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -3

Query: 490 LEGTYLFVVVFEDHRAVTLPAVVTVLHHR 404
           L G+Y   ++F    +V L  +V   HHR
Sbjct: 324 LLGSYFNCIMFMVASSVVLTVLVLNFHHR 352


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -3

Query: 538 FYLKSIIHSSASVPYRLEGTYLFVVVFEDHRAVTLPAVVTVLHHR 404
           F L S I  S S+   L G YL   +     +V +  V+  +H+R
Sbjct: 281 FLLISEIIPSTSLALPLLGKYLLFTMILVGLSVVITIVILNVHYR 325


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = -3

Query: 553 DTVSRFYLKSIIHSSASVPYRLEGTYLFVVVFEDHRAV 440
           DT S+  +K+I     S+P +L     F +    HR +
Sbjct: 55  DTESKLPVKAITLPDLSIPMQLGRRQPFSLFIPAHRKI 92


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,998
Number of Sequences: 438
Number of extensions: 2940
Number of successful extensions: 19
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16748661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)