Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00004
(579 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g23410.1 68414.m02932 ubiquitin extension protein, putative /... 179 1e-45
At2g47110.1 68415.m05883 ubiquitin extension protein 6 (UBQ6) / ... 177 4e-45
At3g62250.1 68416.m06993 ubiquitin extension protein 5 (UBQ5) / ... 177 6e-45
At5g20620.1 68418.m02449 polyubiquitin (UBQ4) identical to GI:17677 112 1e-25
At5g03240.2 68418.m00273 polyubiquitin (UBQ3) identical to GI:92... 112 1e-25
At5g03240.1 68418.m00272 polyubiquitin (UBQ3) identical to GI:92... 112 1e-25
At4g05320.5 68417.m00814 polyubiquitin (UBQ10) (SEN3) senescence... 112 1e-25
At4g05320.4 68417.m00813 polyubiquitin (UBQ10) (SEN3) senescence... 112 1e-25
At4g05320.3 68417.m00812 polyubiquitin (UBQ10) (SEN3) senescence... 112 1e-25
At4g05320.2 68417.m00811 polyubiquitin (UBQ10) (SEN3) senescence... 112 1e-25
At4g05320.1 68417.m00810 polyubiquitin (UBQ10) (SEN3) senescence... 112 1e-25
At4g05050.1 68417.m00744 polyubiquitin (UBQ11) identical to GI:3... 112 1e-25
At4g02890.3 68417.m00391 polyubiquitin (UBQ14) identical to GI:1... 112 1e-25
At4g02890.2 68417.m00390 polyubiquitin (UBQ14) identical to GI:1... 112 1e-25
At4g02890.1 68417.m00389 polyubiquitin (UBQ14) identical to GI:1... 112 1e-25
At3g52590.1 68416.m05792 ubiquitin extension protein 1 (UBQ1) / ... 112 1e-25
At2g36170.1 68415.m04439 ubiquitin extension protein 2 (UBQ2) / ... 112 1e-25
At2g35635.1 68415.m04370 ubiquitin family protein contains INTER... 112 1e-25
At1g65350.1 68414.m07413 polyubiquitin, putative similar to poly... 112 1e-25
At1g31340.1 68414.m03835 ubiquitin family protein contains INTER... 112 1e-25
At1g55060.1 68414.m06289 polyubiquitin (UBQ12) identical to poly... 111 3e-25
At5g37640.1 68418.m04533 polyubiquitin (UBQ9) identical to polyu... 111 4e-25
At3g09790.1 68416.m01163 polyubiquitin (UBQ8) identical to polyu... 105 3e-23
At1g53930.1 68414.m06139 ubiquitin family protein contains Pfam ... 91 4e-19
At1g11980.1 68414.m01384 ubiquitin family protein similar to Cha... 70 1e-12
At1g53950.1 68414.m06145 ubiquitin family protein contains INTER... 66 1e-11
At4g12570.1 68417.m01983 ubiquitin-protein ligase, putative simi... 51 6e-07
At5g42220.1 68418.m05139 ubiquitin family protein contains INTER... 50 1e-06
At5g38470.1 68418.m04650 DNA repair protein RAD23, putative simi... 50 1e-06
At3g02540.2 68416.m00243 ubiquitin family protein contains Pfam ... 47 1e-05
At3g02540.1 68416.m00242 ubiquitin family protein contains Pfam ... 47 1e-05
At2g17190.1 68415.m01985 ubiquitin family protein contains INTER... 46 1e-05
At2g17200.1 68415.m01986 ubiquitin family protein weak similarit... 46 2e-05
At3g13235.1 68416.m01666 ubiquitin family protein contains INTER... 45 3e-05
At1g79650.3 68414.m09289 DNA repair protein RAD23, putative simi... 45 3e-05
At1g79650.2 68414.m09288 DNA repair protein RAD23, putative simi... 45 3e-05
At1g79650.1 68414.m09287 DNA repair protein RAD23, putative simi... 45 3e-05
At1g16190.1 68414.m01939 DNA repair protein RAD23, putative simi... 45 3e-05
At4g02970.1 68417.m00404 ubiquitin family protein contains INTER... 45 4e-05
At4g03360.1 68417.m00458 ubiquitin family protein contains INTER... 43 1e-04
At4g05230.1 68417.m00789 ubiquitin family protein contains INTER... 43 2e-04
At4g02950.1 68417.m00402 ubiquitin family protein contains INTER... 43 2e-04
At4g03350.1 68417.m00457 ubiquitin family protein contains INTER... 42 2e-04
At4g01000.1 68417.m00135 ubiquitin family protein low similarity... 42 4e-04
At2g30100.1 68415.m03663 ubiquitin family protein low similarity... 41 7e-04
At4g03370.1 68417.m00459 ubiquitin family protein contains INTER... 40 0.001
At5g16090.1 68418.m01880 ubiquitin family protein contains INTER... 39 0.002
At1g53980.1 68414.m06149 polyubiquitin-related contains similari... 39 0.002
At4g05250.1 68417.m00793 ubiquitin family protein contains INTER... 39 0.003
At4g05310.1 68417.m00809 ubiquitin family protein contains INTER... 37 0.008
At4g05270.1 68417.m00797 ubiquitin family protein contains INTER... 37 0.008
At5g51590.1 68418.m06396 DNA-binding protein-related contains Pf... 36 0.015
At3g06455.1 68416.m00747 splicing factor-related contains weak s... 36 0.015
At5g14360.1 68418.m01678 ubiquitin family protein contains INTER... 36 0.026
At5g09340.1 68418.m01082 ubiquitin, putative similar to ubiquiti... 35 0.034
At5g40630.1 68418.m04932 ubiquitin family protein contains INTER... 34 0.060
At1g26270.1 68414.m03205 phosphatidylinositol 3- and 4-kinase fa... 34 0.060
At1g11970.1 68414.m01383 hypothetical protein 32 0.24
At2g12550.1 68415.m01357 ubiquitin-associated (UBA)/TS-N domain-... 30 0.97
At1g22050.1 68414.m02758 ubiquitin family protein contains INTER... 29 2.2
At2g25840.2 68415.m03101 tRNA synthetase class I (W and Y) famil... 28 3.9
At2g25840.1 68415.m03100 tRNA synthetase class I (W and Y) famil... 28 3.9
At5g49910.1 68418.m06180 heat shock protein 70 / HSP70 (HSC70-7)... 28 5.2
At3g16470.1 68416.m02101 jacalin lectin family protein contains ... 27 9.0
>At1g23410.1 68414.m02932 ubiquitin extension protein, putative /
40S ribosomal protein S27A (RPS27aA) strong similarity
to ubiquitin extension protein (UBQ5) GB:AAA32906
GI:166934 from (Arabidopsis thaliana)
Length = 156
Score = 179 bits (436), Expect = 1e-45
Identities = 92/157 (58%), Positives = 109/157 (69%), Gaps = 2/157 (1%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL--YG 181
MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL Y
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 182 LQYPEGIHPPPGVEASWWR*ETQEENYSTPXXXXXXXXXXXLAVLRFYKVDENGKIHRLR 361
+Q +H + + +++ Y+ P LAVL+FYKVD +GK+ RL+
Sbjct: 61 IQKESTLHLVLRLRGG--AKKRKKKTYTKPKKIKHTHKKVKLAVLQFYKVDGSGKVQRLK 118
Query: 362 RECTGEQCGAGVFMAVMEDRHYCGKCHSTMVFKDDDK 472
+EC CG G FMA DRHYCGKC +T VFK D+
Sbjct: 119 KECPSVSCGPGTFMASHFDRHYCGKCGTTYVFKKADE 155
>At2g47110.1 68415.m05883 ubiquitin extension protein 6 (UBQ6) / 40S
ribosomal protein S27A (RPS27aB) identical to GI:166936
Length = 157
Score = 177 bits (431), Expect = 4e-45
Identities = 91/155 (58%), Positives = 108/155 (69%), Gaps = 2/155 (1%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL--YG 181
MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL Y
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 182 LQYPEGIHPPPGVEASWWR*ETQEENYSTPXXXXXXXXXXXLAVLRFYKVDENGKIHRLR 361
+Q +H + + +++ Y+ P LAVL+FYKVD +GK+ RLR
Sbjct: 61 IQKESTLHLVLRLRGG--AKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDGSGKVQRLR 118
Query: 362 RECTGEQCGAGVFMAVMEDRHYCGKCHSTMVFKDD 466
+EC CGAG FMA DRHYCGKC T V++ +
Sbjct: 119 KECPNATCGAGTFMASHFDRHYCGKCGLTYVYQKE 153
>At3g62250.1 68416.m06993 ubiquitin extension protein 5 (UBQ5) / 40S
ribosomal protein S27A (RPS27aC) identical to GI:166933,
GI:166934
Length = 157
Score = 177 bits (430), Expect = 6e-45
Identities = 90/155 (58%), Positives = 108/155 (69%), Gaps = 2/155 (1%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL--YG 181
MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL Y
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 182 LQYPEGIHPPPGVEASWWR*ETQEENYSTPXXXXXXXXXXXLAVLRFYKVDENGKIHRLR 361
+Q +H + + +++ Y+ P LAVL+FYK+D +GK+ RLR
Sbjct: 61 IQKESTLHLVLRLRGG--AKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKIDGSGKVQRLR 118
Query: 362 RECTGEQCGAGVFMAVMEDRHYCGKCHSTMVFKDD 466
+EC CGAG FMA DRHYCGKC T V++ +
Sbjct: 119 KECPNATCGAGTFMASHFDRHYCGKCGLTYVYQKE 153
>At5g20620.1 68418.m02449 polyubiquitin (UBQ4) identical to GI:17677
Length = 382
Score = 112 bits (270), Expect = 1e-25
Identities = 56/68 (82%), Positives = 60/68 (88%), Gaps = 2/68 (2%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL--YG 181
MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL Y
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 182 LQYPEGIH 205
+Q +H
Sbjct: 61 IQKESTLH 68
Score = 112 bits (270), Expect = 1e-25
Identities = 56/68 (82%), Positives = 60/68 (88%), Gaps = 2/68 (2%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL--YG 181
MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL Y
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
Query: 182 LQYPEGIH 205
+Q +H
Sbjct: 137 IQKESTLH 144
Score = 112 bits (270), Expect = 1e-25
Identities = 56/68 (82%), Positives = 60/68 (88%), Gaps = 2/68 (2%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL--YG 181
MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL Y
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
Query: 182 LQYPEGIH 205
+Q +H
Sbjct: 213 IQKESTLH 220
Score = 112 bits (270), Expect = 1e-25
Identities = 56/68 (82%), Positives = 60/68 (88%), Gaps = 2/68 (2%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL--YG 181
MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL Y
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
Query: 182 LQYPEGIH 205
+Q +H
Sbjct: 289 IQKESTLH 296
Score = 112 bits (270), Expect = 1e-25
Identities = 56/68 (82%), Positives = 60/68 (88%), Gaps = 2/68 (2%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL--YG 181
MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL Y
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
Query: 182 LQYPEGIH 205
+Q +H
Sbjct: 365 IQKESTLH 372
Score = 31.1 bits (67), Expect = 0.56
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +3
Query: 180 DYNIQKESTLHLV 218
DYNIQKESTLHLV
Sbjct: 58 DYNIQKESTLHLV 70
Score = 31.1 bits (67), Expect = 0.56
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +3
Query: 180 DYNIQKESTLHLV 218
DYNIQKESTLHLV
Sbjct: 134 DYNIQKESTLHLV 146
Score = 31.1 bits (67), Expect = 0.56
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +3
Query: 180 DYNIQKESTLHLV 218
DYNIQKESTLHLV
Sbjct: 210 DYNIQKESTLHLV 222
Score = 31.1 bits (67), Expect = 0.56
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +3
Query: 180 DYNIQKESTLHLV 218
DYNIQKESTLHLV
Sbjct: 286 DYNIQKESTLHLV 298
Score = 31.1 bits (67), Expect = 0.56
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +3
Query: 180 DYNIQKESTLHLV 218
DYNIQKESTLHLV
Sbjct: 362 DYNIQKESTLHLV 374
>At5g03240.2 68418.m00273 polyubiquitin (UBQ3) identical to
GI:928809
Length = 306
Score = 112 bits (270), Expect = 1e-25
Identities = 56/68 (82%), Positives = 60/68 (88%), Gaps = 2/68 (2%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL--YG 181
MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL Y
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 182 LQYPEGIH 205
+Q +H
Sbjct: 61 IQKESTLH 68
Score = 112 bits (270), Expect = 1e-25
Identities = 56/68 (82%), Positives = 60/68 (88%), Gaps = 2/68 (2%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL--YG 181
MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL Y
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
Query: 182 LQYPEGIH 205
+Q +H
Sbjct: 137 IQKESTLH 144
Score = 112 bits (270), Expect = 1e-25
Identities = 56/68 (82%), Positives = 60/68 (88%), Gaps = 2/68 (2%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL--YG 181
MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL Y
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
Query: 182 LQYPEGIH 205
+Q +H
Sbjct: 213 IQKESTLH 220
Score = 112 bits (270), Expect = 1e-25
Identities = 56/68 (82%), Positives = 60/68 (88%), Gaps = 2/68 (2%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL--YG 181
MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL Y
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
Query: 182 LQYPEGIH 205
+Q +H
Sbjct: 289 IQKESTLH 296
Score = 31.1 bits (67), Expect = 0.56
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +3
Query: 180 DYNIQKESTLHLV 218
DYNIQKESTLHLV
Sbjct: 58 DYNIQKESTLHLV 70
Score = 31.1 bits (67), Expect = 0.56
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +3
Query: 180 DYNIQKESTLHLV 218
DYNIQKESTLHLV
Sbjct: 134 DYNIQKESTLHLV 146
Score = 31.1 bits (67), Expect = 0.56
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +3
Query: 180 DYNIQKESTLHLV 218
DYNIQKESTLHLV
Sbjct: 210 DYNIQKESTLHLV 222
Score = 31.1 bits (67), Expect = 0.56
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +3
Query: 180 DYNIQKESTLHLV 218
DYNIQKESTLHLV
Sbjct: 286 DYNIQKESTLHLV 298
>At5g03240.1 68418.m00272 polyubiquitin (UBQ3) identical to
GI:928809
Length = 306
Score = 112 bits (270), Expect = 1e-25
Identities = 56/68 (82%), Positives = 60/68 (88%), Gaps = 2/68 (2%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL--YG 181
MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL Y
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 182 LQYPEGIH 205
+Q +H
Sbjct: 61 IQKESTLH 68
Score = 112 bits (270), Expect = 1e-25
Identities = 56/68 (82%), Positives = 60/68 (88%), Gaps = 2/68 (2%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL--YG 181
MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL Y
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
Query: 182 LQYPEGIH 205
+Q +H
Sbjct: 137 IQKESTLH 144
Score = 112 bits (270), Expect = 1e-25
Identities = 56/68 (82%), Positives = 60/68 (88%), Gaps = 2/68 (2%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL--YG 181
MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL Y
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
Query: 182 LQYPEGIH 205
+Q +H
Sbjct: 213 IQKESTLH 220
Score = 112 bits (270), Expect = 1e-25
Identities = 56/68 (82%), Positives = 60/68 (88%), Gaps = 2/68 (2%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL--YG 181
MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL Y
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
Query: 182 LQYPEGIH 205
+Q +H
Sbjct: 289 IQKESTLH 296
Score = 31.1 bits (67), Expect = 0.56
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +3
Query: 180 DYNIQKESTLHLV 218
DYNIQKESTLHLV
Sbjct: 58 DYNIQKESTLHLV 70
Score = 31.1 bits (67), Expect = 0.56
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +3
Query: 180 DYNIQKESTLHLV 218
DYNIQKESTLHLV
Sbjct: 134 DYNIQKESTLHLV 146
Score = 31.1 bits (67), Expect = 0.56
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +3
Query: 180 DYNIQKESTLHLV 218
DYNIQKESTLHLV
Sbjct: 210 DYNIQKESTLHLV 222
Score = 31.1 bits (67), Expect = 0.56
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +3
Query: 180 DYNIQKESTLHLV 218
DYNIQKESTLHLV
Sbjct: 286 DYNIQKESTLHLV 298
>At4g05320.5 68417.m00814 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 312
Score = 112 bits (270), Expect = 1e-25
Identities = 56/68 (82%), Positives = 60/68 (88%), Gaps = 2/68 (2%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL--YG 181
MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL Y
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 182 LQYPEGIH 205
+Q +H
Sbjct: 61 IQKESTLH 68
Score = 112 bits (270), Expect = 1e-25
Identities = 56/68 (82%), Positives = 60/68 (88%), Gaps = 2/68 (2%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL--YG 181
MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL Y
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
Query: 182 LQYPEGIH 205
+Q +H
Sbjct: 137 IQKESTLH 144
Score = 112 bits (270), Expect = 1e-25
Identities = 56/68 (82%), Positives = 60/68 (88%), Gaps = 2/68 (2%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL--YG 181
MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL Y
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
Query: 182 LQYPEGIH 205
+Q +H
Sbjct: 213 IQKESTLH 220
Score = 66.5 bits (155), Expect = 1e-11
Identities = 32/34 (94%), Positives = 33/34 (97%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE 109
MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKE
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE 262
Score = 31.1 bits (67), Expect = 0.56
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +3
Query: 180 DYNIQKESTLHLV 218
DYNIQKESTLHLV
Sbjct: 58 DYNIQKESTLHLV 70
Score = 31.1 bits (67), Expect = 0.56
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +3
Query: 180 DYNIQKESTLHLV 218
DYNIQKESTLHLV
Sbjct: 134 DYNIQKESTLHLV 146
Score = 31.1 bits (67), Expect = 0.56
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +3
Query: 180 DYNIQKESTLHLV 218
DYNIQKESTLHLV
Sbjct: 210 DYNIQKESTLHLV 222
>At4g05320.4 68417.m00813 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 464
Score = 112 bits (270), Expect = 1e-25
Identities = 56/68 (82%), Positives = 60/68 (88%), Gaps = 2/68 (2%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL--YG 181
MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL Y
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 182 LQYPEGIH 205
+Q +H
Sbjct: 61 IQKESTLH 68
Score = 112 bits (270), Expect = 1e-25
Identities = 56/68 (82%), Positives = 60/68 (88%), Gaps = 2/68 (2%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL--YG 181
MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL Y
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
Query: 182 LQYPEGIH 205
+Q +H
Sbjct: 137 IQKESTLH 144
Score = 112 bits (270), Expect = 1e-25
Identities = 56/68 (82%), Positives = 60/68 (88%), Gaps = 2/68 (2%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL--YG 181
MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL Y
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
Query: 182 LQYPEGIH 205
+Q +H
Sbjct: 213 IQKESTLH 220
Score = 112 bits (270), Expect = 1e-25
Identities = 56/68 (82%), Positives = 60/68 (88%), Gaps = 2/68 (2%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL--YG 181
MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL Y
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
Query: 182 LQYPEGIH 205
+Q +H
Sbjct: 289 IQKESTLH 296
Score = 112 bits (270), Expect = 1e-25
Identities = 56/68 (82%), Positives = 60/68 (88%), Gaps = 2/68 (2%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL--YG 181
MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL Y
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
Query: 182 LQYPEGIH 205
+Q +H
Sbjct: 365 IQKESTLH 372
Score = 66.5 bits (155), Expect = 1e-11
Identities = 32/34 (94%), Positives = 33/34 (97%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE 109
MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKE
Sbjct: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE 414
Score = 31.1 bits (67), Expect = 0.56
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +3
Query: 180 DYNIQKESTLHLV 218
DYNIQKESTLHLV
Sbjct: 58 DYNIQKESTLHLV 70
Score = 31.1 bits (67), Expect = 0.56
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +3
Query: 180 DYNIQKESTLHLV 218
DYNIQKESTLHLV
Sbjct: 134 DYNIQKESTLHLV 146
Score = 31.1 bits (67), Expect = 0.56
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +3
Query: 180 DYNIQKESTLHLV 218
DYNIQKESTLHLV
Sbjct: 210 DYNIQKESTLHLV 222
Score = 31.1 bits (67), Expect = 0.56
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +3
Query: 180 DYNIQKESTLHLV 218
DYNIQKESTLHLV
Sbjct: 286 DYNIQKESTLHLV 298
Score = 31.1 bits (67), Expect = 0.56
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +3
Query: 180 DYNIQKESTLHLV 218
DYNIQKESTLHLV
Sbjct: 362 DYNIQKESTLHLV 374
>At4g05320.3 68417.m00812 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 388
Score = 112 bits (270), Expect = 1e-25
Identities = 56/68 (82%), Positives = 60/68 (88%), Gaps = 2/68 (2%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL--YG 181
MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL Y
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 182 LQYPEGIH 205
+Q +H
Sbjct: 61 IQKESTLH 68
Score = 112 bits (270), Expect = 1e-25
Identities = 56/68 (82%), Positives = 60/68 (88%), Gaps = 2/68 (2%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL--YG 181
MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL Y
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
Query: 182 LQYPEGIH 205
+Q +H
Sbjct: 137 IQKESTLH 144
Score = 112 bits (270), Expect = 1e-25
Identities = 56/68 (82%), Positives = 60/68 (88%), Gaps = 2/68 (2%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL--YG 181
MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL Y
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
Query: 182 LQYPEGIH 205
+Q +H
Sbjct: 213 IQKESTLH 220
Score = 112 bits (270), Expect = 1e-25
Identities = 56/68 (82%), Positives = 60/68 (88%), Gaps = 2/68 (2%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL--YG 181
MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL Y
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
Query: 182 LQYPEGIH 205
+Q +H
Sbjct: 289 IQKESTLH 296
Score = 66.5 bits (155), Expect = 1e-11
Identities = 32/34 (94%), Positives = 33/34 (97%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE 109
MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKE
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE 338
Score = 31.1 bits (67), Expect = 0.56
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +3
Query: 180 DYNIQKESTLHLV 218
DYNIQKESTLHLV
Sbjct: 58 DYNIQKESTLHLV 70
Score = 31.1 bits (67), Expect = 0.56
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +3
Query: 180 DYNIQKESTLHLV 218
DYNIQKESTLHLV
Sbjct: 134 DYNIQKESTLHLV 146
Score = 31.1 bits (67), Expect = 0.56
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +3
Query: 180 DYNIQKESTLHLV 218
DYNIQKESTLHLV
Sbjct: 210 DYNIQKESTLHLV 222
Score = 31.1 bits (67), Expect = 0.56
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +3
Query: 180 DYNIQKESTLHLV 218
DYNIQKESTLHLV
Sbjct: 286 DYNIQKESTLHLV 298
>At4g05320.2 68417.m00811 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 464
Score = 112 bits (270), Expect = 1e-25
Identities = 56/68 (82%), Positives = 60/68 (88%), Gaps = 2/68 (2%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL--YG 181
MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL Y
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 182 LQYPEGIH 205
+Q +H
Sbjct: 61 IQKESTLH 68
Score = 112 bits (270), Expect = 1e-25
Identities = 56/68 (82%), Positives = 60/68 (88%), Gaps = 2/68 (2%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL--YG 181
MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL Y
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
Query: 182 LQYPEGIH 205
+Q +H
Sbjct: 137 IQKESTLH 144
Score = 112 bits (270), Expect = 1e-25
Identities = 56/68 (82%), Positives = 60/68 (88%), Gaps = 2/68 (2%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL--YG 181
MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL Y
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
Query: 182 LQYPEGIH 205
+Q +H
Sbjct: 213 IQKESTLH 220
Score = 112 bits (270), Expect = 1e-25
Identities = 56/68 (82%), Positives = 60/68 (88%), Gaps = 2/68 (2%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL--YG 181
MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL Y
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
Query: 182 LQYPEGIH 205
+Q +H
Sbjct: 289 IQKESTLH 296
Score = 112 bits (270), Expect = 1e-25
Identities = 56/68 (82%), Positives = 60/68 (88%), Gaps = 2/68 (2%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL--YG 181
MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL Y
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
Query: 182 LQYPEGIH 205
+Q +H
Sbjct: 365 IQKESTLH 372
Score = 66.5 bits (155), Expect = 1e-11
Identities = 32/34 (94%), Positives = 33/34 (97%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE 109
MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKE
Sbjct: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE 414
Score = 31.1 bits (67), Expect = 0.56
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +3
Query: 180 DYNIQKESTLHLV 218
DYNIQKESTLHLV
Sbjct: 58 DYNIQKESTLHLV 70
Score = 31.1 bits (67), Expect = 0.56
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +3
Query: 180 DYNIQKESTLHLV 218
DYNIQKESTLHLV
Sbjct: 134 DYNIQKESTLHLV 146
Score = 31.1 bits (67), Expect = 0.56
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +3
Query: 180 DYNIQKESTLHLV 218
DYNIQKESTLHLV
Sbjct: 210 DYNIQKESTLHLV 222
Score = 31.1 bits (67), Expect = 0.56
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +3
Query: 180 DYNIQKESTLHLV 218
DYNIQKESTLHLV
Sbjct: 286 DYNIQKESTLHLV 298
Score = 31.1 bits (67), Expect = 0.56
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +3
Query: 180 DYNIQKESTLHLV 218
DYNIQKESTLHLV
Sbjct: 362 DYNIQKESTLHLV 374
>At4g05320.1 68417.m00810 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 388
Score = 112 bits (270), Expect = 1e-25
Identities = 56/68 (82%), Positives = 60/68 (88%), Gaps = 2/68 (2%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL--YG 181
MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL Y
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 182 LQYPEGIH 205
+Q +H
Sbjct: 61 IQKESTLH 68
Score = 112 bits (270), Expect = 1e-25
Identities = 56/68 (82%), Positives = 60/68 (88%), Gaps = 2/68 (2%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL--YG 181
MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL Y
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
Query: 182 LQYPEGIH 205
+Q +H
Sbjct: 137 IQKESTLH 144
Score = 112 bits (270), Expect = 1e-25
Identities = 56/68 (82%), Positives = 60/68 (88%), Gaps = 2/68 (2%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL--YG 181
MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL Y
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
Query: 182 LQYPEGIH 205
+Q +H
Sbjct: 213 IQKESTLH 220
Score = 112 bits (270), Expect = 1e-25
Identities = 56/68 (82%), Positives = 60/68 (88%), Gaps = 2/68 (2%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL--YG 181
MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL Y
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
Query: 182 LQYPEGIH 205
+Q +H
Sbjct: 289 IQKESTLH 296
Score = 66.5 bits (155), Expect = 1e-11
Identities = 32/34 (94%), Positives = 33/34 (97%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE 109
MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKE
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE 338
Score = 31.1 bits (67), Expect = 0.56
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +3
Query: 180 DYNIQKESTLHLV 218
DYNIQKESTLHLV
Sbjct: 58 DYNIQKESTLHLV 70
Score = 31.1 bits (67), Expect = 0.56
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +3
Query: 180 DYNIQKESTLHLV 218
DYNIQKESTLHLV
Sbjct: 134 DYNIQKESTLHLV 146
Score = 31.1 bits (67), Expect = 0.56
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +3
Query: 180 DYNIQKESTLHLV 218
DYNIQKESTLHLV
Sbjct: 210 DYNIQKESTLHLV 222
Score = 31.1 bits (67), Expect = 0.56
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +3
Query: 180 DYNIQKESTLHLV 218
DYNIQKESTLHLV
Sbjct: 286 DYNIQKESTLHLV 298
>At4g05050.1 68417.m00744 polyubiquitin (UBQ11) identical to
GI:304117
Length = 229
Score = 112 bits (270), Expect = 1e-25
Identities = 56/68 (82%), Positives = 60/68 (88%), Gaps = 2/68 (2%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL--YG 181
MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL Y
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 182 LQYPEGIH 205
+Q +H
Sbjct: 61 IQKESTLH 68
Score = 112 bits (270), Expect = 1e-25
Identities = 56/68 (82%), Positives = 60/68 (88%), Gaps = 2/68 (2%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL--YG 181
MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL Y
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
Query: 182 LQYPEGIH 205
+Q +H
Sbjct: 137 IQKESTLH 144
Score = 112 bits (270), Expect = 1e-25
Identities = 56/68 (82%), Positives = 60/68 (88%), Gaps = 2/68 (2%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL--YG 181
MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL Y
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
Query: 182 LQYPEGIH 205
+Q +H
Sbjct: 213 IQKESTLH 220
Score = 31.1 bits (67), Expect = 0.56
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +3
Query: 180 DYNIQKESTLHLV 218
DYNIQKESTLHLV
Sbjct: 58 DYNIQKESTLHLV 70
Score = 31.1 bits (67), Expect = 0.56
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +3
Query: 180 DYNIQKESTLHLV 218
DYNIQKESTLHLV
Sbjct: 134 DYNIQKESTLHLV 146
Score = 31.1 bits (67), Expect = 0.56
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +3
Query: 180 DYNIQKESTLHLV 218
DYNIQKESTLHLV
Sbjct: 210 DYNIQKESTLHLV 222
>At4g02890.3 68417.m00391 polyubiquitin (UBQ14) identical to
GI:166795; similar to N. sylvestris hexameric
polyubiquitin, GenBank accession number M74101
Length = 305
Score = 112 bits (270), Expect = 1e-25
Identities = 56/68 (82%), Positives = 60/68 (88%), Gaps = 2/68 (2%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL--YG 181
MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL Y
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 182 LQYPEGIH 205
+Q +H
Sbjct: 61 IQKESTLH 68
Score = 112 bits (270), Expect = 1e-25
Identities = 56/68 (82%), Positives = 60/68 (88%), Gaps = 2/68 (2%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL--YG 181
MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL Y
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
Query: 182 LQYPEGIH 205
+Q +H
Sbjct: 137 IQKESTLH 144
Score = 112 bits (270), Expect = 1e-25
Identities = 56/68 (82%), Positives = 60/68 (88%), Gaps = 2/68 (2%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL--YG 181
MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL Y
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
Query: 182 LQYPEGIH 205
+Q +H
Sbjct: 213 IQKESTLH 220
Score = 112 bits (270), Expect = 1e-25
Identities = 56/68 (82%), Positives = 60/68 (88%), Gaps = 2/68 (2%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL--YG 181
MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL Y
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
Query: 182 LQYPEGIH 205
+Q +H
Sbjct: 289 IQKESTLH 296
Score = 31.1 bits (67), Expect = 0.56
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +3
Query: 180 DYNIQKESTLHLV 218
DYNIQKESTLHLV
Sbjct: 58 DYNIQKESTLHLV 70
Score = 31.1 bits (67), Expect = 0.56
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +3
Query: 180 DYNIQKESTLHLV 218
DYNIQKESTLHLV
Sbjct: 134 DYNIQKESTLHLV 146
Score = 31.1 bits (67), Expect = 0.56
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +3
Query: 180 DYNIQKESTLHLV 218
DYNIQKESTLHLV
Sbjct: 210 DYNIQKESTLHLV 222
Score = 31.1 bits (67), Expect = 0.56
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +3
Query: 180 DYNIQKESTLHLV 218
DYNIQKESTLHLV
Sbjct: 286 DYNIQKESTLHLV 298
>At4g02890.2 68417.m00390 polyubiquitin (UBQ14) identical to
GI:166795; similar to N. sylvestris hexameric
polyubiquitin, GenBank accession number M74101
Length = 229
Score = 112 bits (270), Expect = 1e-25
Identities = 56/68 (82%), Positives = 60/68 (88%), Gaps = 2/68 (2%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL--YG 181
MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL Y
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 182 LQYPEGIH 205
+Q +H
Sbjct: 61 IQKESTLH 68
Score = 112 bits (270), Expect = 1e-25
Identities = 56/68 (82%), Positives = 60/68 (88%), Gaps = 2/68 (2%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL--YG 181
MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL Y
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
Query: 182 LQYPEGIH 205
+Q +H
Sbjct: 137 IQKESTLH 144
Score = 112 bits (270), Expect = 1e-25
Identities = 56/68 (82%), Positives = 60/68 (88%), Gaps = 2/68 (2%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL--YG 181
MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL Y
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
Query: 182 LQYPEGIH 205
+Q +H
Sbjct: 213 IQKESTLH 220
Score = 31.1 bits (67), Expect = 0.56
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +3
Query: 180 DYNIQKESTLHLV 218
DYNIQKESTLHLV
Sbjct: 58 DYNIQKESTLHLV 70
Score = 31.1 bits (67), Expect = 0.56
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +3
Query: 180 DYNIQKESTLHLV 218
DYNIQKESTLHLV
Sbjct: 134 DYNIQKESTLHLV 146
Score = 31.1 bits (67), Expect = 0.56
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +3
Query: 180 DYNIQKESTLHLV 218
DYNIQKESTLHLV
Sbjct: 210 DYNIQKESTLHLV 222
>At4g02890.1 68417.m00389 polyubiquitin (UBQ14) identical to
GI:166795; similar to N. sylvestris hexameric
polyubiquitin, GenBank accession number M74101
Length = 305
Score = 112 bits (270), Expect = 1e-25
Identities = 56/68 (82%), Positives = 60/68 (88%), Gaps = 2/68 (2%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL--YG 181
MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL Y
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 182 LQYPEGIH 205
+Q +H
Sbjct: 61 IQKESTLH 68
Score = 112 bits (270), Expect = 1e-25
Identities = 56/68 (82%), Positives = 60/68 (88%), Gaps = 2/68 (2%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL--YG 181
MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL Y
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
Query: 182 LQYPEGIH 205
+Q +H
Sbjct: 137 IQKESTLH 144
Score = 112 bits (270), Expect = 1e-25
Identities = 56/68 (82%), Positives = 60/68 (88%), Gaps = 2/68 (2%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL--YG 181
MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL Y
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
Query: 182 LQYPEGIH 205
+Q +H
Sbjct: 213 IQKESTLH 220
Score = 112 bits (270), Expect = 1e-25
Identities = 56/68 (82%), Positives = 60/68 (88%), Gaps = 2/68 (2%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL--YG 181
MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL Y
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
Query: 182 LQYPEGIH 205
+Q +H
Sbjct: 289 IQKESTLH 296
Score = 31.1 bits (67), Expect = 0.56
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +3
Query: 180 DYNIQKESTLHLV 218
DYNIQKESTLHLV
Sbjct: 58 DYNIQKESTLHLV 70
Score = 31.1 bits (67), Expect = 0.56
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +3
Query: 180 DYNIQKESTLHLV 218
DYNIQKESTLHLV
Sbjct: 134 DYNIQKESTLHLV 146
Score = 31.1 bits (67), Expect = 0.56
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +3
Query: 180 DYNIQKESTLHLV 218
DYNIQKESTLHLV
Sbjct: 210 DYNIQKESTLHLV 222
Score = 31.1 bits (67), Expect = 0.56
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +3
Query: 180 DYNIQKESTLHLV 218
DYNIQKESTLHLV
Sbjct: 286 DYNIQKESTLHLV 298
>At3g52590.1 68416.m05792 ubiquitin extension protein 1 (UBQ1) / 60S
ribosomal protein L40 (RPL40B) identical to GI:166929,
GI:166930
Length = 128
Score = 112 bits (270), Expect = 1e-25
Identities = 56/68 (82%), Positives = 60/68 (88%), Gaps = 2/68 (2%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL--YG 181
MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL Y
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 182 LQYPEGIH 205
+Q +H
Sbjct: 61 IQKESTLH 68
Score = 31.1 bits (67), Expect = 0.56
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +3
Query: 180 DYNIQKESTLHLV 218
DYNIQKESTLHLV
Sbjct: 58 DYNIQKESTLHLV 70
>At2g36170.1 68415.m04439 ubiquitin extension protein 2 (UBQ2) / 60S
ribosomal protein L40 (RPL40A) identical to GI:166930,
GI:166931
Length = 128
Score = 112 bits (270), Expect = 1e-25
Identities = 56/68 (82%), Positives = 60/68 (88%), Gaps = 2/68 (2%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL--YG 181
MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL Y
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 182 LQYPEGIH 205
+Q +H
Sbjct: 61 IQKESTLH 68
Score = 31.1 bits (67), Expect = 0.56
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +3
Query: 180 DYNIQKESTLHLV 218
DYNIQKESTLHLV
Sbjct: 58 DYNIQKESTLHLV 70
>At2g35635.1 68415.m04370 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 154
Score = 112 bits (270), Expect = 1e-25
Identities = 56/68 (82%), Positives = 60/68 (88%), Gaps = 2/68 (2%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL--YG 181
MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL Y
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 182 LQYPEGIH 205
+Q +H
Sbjct: 61 IQKESTLH 68
Score = 77.4 bits (182), Expect = 6e-15
Identities = 33/53 (62%), Positives = 45/53 (84%)
Frame = +2
Query: 14 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRT 172
I VKTLTGK I +++EP+DTI+ +K ++++KEGIPP QQRLI+AGKQL D +T
Sbjct: 79 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKT 131
Score = 31.1 bits (67), Expect = 0.56
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +3
Query: 180 DYNIQKESTLHLV 218
DYNIQKESTLHLV
Sbjct: 58 DYNIQKESTLHLV 70
>At1g65350.1 68414.m07413 polyubiquitin, putative similar to
polyubiquitin GI:248337 from [Zea mays]
Length = 294
Score = 112 bits (270), Expect = 1e-25
Identities = 56/68 (82%), Positives = 60/68 (88%), Gaps = 2/68 (2%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL--YG 181
MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL Y
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 182 LQYPEGIH 205
+Q +H
Sbjct: 61 IQKESTLH 68
Score = 110 bits (264), Expect = 7e-25
Identities = 53/56 (94%), Positives = 55/56 (98%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL 175
MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 132
Score = 109 bits (262), Expect = 1e-24
Identities = 55/68 (80%), Positives = 59/68 (86%), Gaps = 2/68 (2%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL--YG 181
MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKE IPP+QQRLIFAGKQLEDGRTL Y
Sbjct: 152 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEWIPPDQQRLIFAGKQLEDGRTLADYN 211
Query: 182 LQYPEGIH 205
+Q +H
Sbjct: 212 IQKESTLH 219
Score = 99.1 bits (236), Expect = 2e-21
Identities = 48/53 (90%), Positives = 50/53 (94%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDG 166
MQIFVKTLTGKTITLEVE S TI+NVKAKIQDKEGIPP+QQRLIFAGKQLE G
Sbjct: 228 MQIFVKTLTGKTITLEVESSGTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEGG 280
Score = 31.1 bits (67), Expect = 0.56
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +3
Query: 180 DYNIQKESTLHLV 218
DYNIQKESTLHLV
Sbjct: 58 DYNIQKESTLHLV 70
Score = 31.1 bits (67), Expect = 0.56
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +3
Query: 180 DYNIQKESTLHLV 218
DYNIQKESTLHLV
Sbjct: 209 DYNIQKESTLHLV 221
>At1g31340.1 68414.m03835 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 156
Score = 112 bits (270), Expect = 1e-25
Identities = 56/68 (82%), Positives = 60/68 (88%), Gaps = 2/68 (2%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL--YG 181
MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL Y
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 182 LQYPEGIH 205
+Q +H
Sbjct: 61 IQKESTLH 68
Score = 77.4 bits (182), Expect = 6e-15
Identities = 33/53 (62%), Positives = 45/53 (84%)
Frame = +2
Query: 14 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRT 172
I VKTLTGK I +++EP+DTI+ +K ++++KEGIPP QQRLI+AGKQL D +T
Sbjct: 79 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKT 131
Score = 31.1 bits (67), Expect = 0.56
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +3
Query: 180 DYNIQKESTLHLV 218
DYNIQKESTLHLV
Sbjct: 58 DYNIQKESTLHLV 70
>At1g55060.1 68414.m06289 polyubiquitin (UBQ12) identical to
polyubiquitin (ubq12) gene sequence GI:304121 from
[Arabidopsis thaliana]
Length = 230
Score = 111 bits (267), Expect = 3e-25
Identities = 55/68 (80%), Positives = 60/68 (88%), Gaps = 2/68 (2%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL--YG 181
MQIFVKTLTGKTITLEVE SDTI+N+KAKIQDKEGIPP+QQRLIFAGKQLEDGRTL Y
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
Query: 182 LQYPEGIH 205
+Q +H
Sbjct: 137 IQKESTLH 144
Score = 106 bits (255), Expect = 9e-24
Identities = 54/68 (79%), Positives = 58/68 (85%), Gaps = 2/68 (2%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL--YG 181
MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGI P+QQRLIFAGKQ EDGRTL Y
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGISPDQQRLIFAGKQHEDGRTLADYN 212
Query: 182 LQYPEGIH 205
+Q +H
Sbjct: 213 IQKESTLH 220
Score = 101 bits (241), Expect = 5e-22
Identities = 51/68 (75%), Positives = 56/68 (82%), Gaps = 2/68 (2%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL--YG 181
MQIF+KTLTGKT LEVE SDTI+NVKAKIQD EGIPP+Q RLIFAGKQLEDGRTL Y
Sbjct: 1 MQIFLKTLTGKTKVLEVESSDTIDNVKAKIQDIEGIPPDQHRLIFAGKQLEDGRTLADYN 60
Query: 182 LQYPEGIH 205
+Q +H
Sbjct: 61 VQEDSTLH 68
Score = 31.1 bits (67), Expect = 0.56
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +3
Query: 180 DYNIQKESTLHLV 218
DYNIQKESTLHLV
Sbjct: 134 DYNIQKESTLHLV 146
Score = 31.1 bits (67), Expect = 0.56
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +3
Query: 180 DYNIQKESTLHLV 218
DYNIQKESTLHLV
Sbjct: 210 DYNIQKESTLHLV 222
>At5g37640.1 68418.m04533 polyubiquitin (UBQ9) identical to
polyubiquitin (ubq9) gene sequence GI:304120 from
[Arabidopsis thaliana]
Length = 322
Score = 111 bits (266), Expect = 4e-25
Identities = 54/68 (79%), Positives = 60/68 (88%), Gaps = 2/68 (2%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL--YG 181
MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEG+PP+QQRLIFAGKQL+DGRTL Y
Sbjct: 79 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGVPPDQQRLIFAGKQLDDGRTLADYN 138
Query: 182 LQYPEGIH 205
+Q +H
Sbjct: 139 IQKESTLH 146
Score = 104 bits (249), Expect = 5e-23
Identities = 52/68 (76%), Positives = 57/68 (83%), Gaps = 2/68 (2%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL--YG 181
MQIFV+TLT KTI LEVE SDT +NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL Y
Sbjct: 155 MQIFVRTLTRKTIALEVESSDTTDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 214
Query: 182 LQYPEGIH 205
+Q +H
Sbjct: 215 IQKESTLH 222
Score = 95.5 bits (227), Expect = 2e-20
Identities = 51/69 (73%), Positives = 56/69 (81%), Gaps = 3/69 (4%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDG-RTL--Y 178
MQIFV TLTGKTITLEVE SDTI+NVKAKIQDKE I P+QQRLIFAG+QLEDG TL Y
Sbjct: 231 MQIFVNTLTGKTITLEVESSDTIDNVKAKIQDKERIQPDQQRLIFAGEQLEDGYYTLADY 290
Query: 179 GLQYPEGIH 205
+Q +H
Sbjct: 291 NIQKESTLH 299
Score = 86.6 bits (205), Expect = 1e-17
Identities = 45/70 (64%), Positives = 53/70 (75%), Gaps = 2/70 (2%)
Frame = +2
Query: 2 VKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL-- 175
+ MQI KTLT KTIT++V SDTI NVKAKIQD EGIP +QQRLIF+GK L+DGRTL
Sbjct: 1 MSMQIHAKTLTEKTITIDVVSSDTINNVKAKIQDIEGIPLDQQRLIFSGKLLDDGRTLAD 60
Query: 176 YGLQYPEGIH 205
Y +Q +H
Sbjct: 61 YSIQKDSILH 70
Score = 31.1 bits (67), Expect = 0.56
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +3
Query: 180 DYNIQKESTLHLV 218
DYNIQKESTLHLV
Sbjct: 136 DYNIQKESTLHLV 148
Score = 31.1 bits (67), Expect = 0.56
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +3
Query: 180 DYNIQKESTLHLV 218
DYNIQKESTLHLV
Sbjct: 212 DYNIQKESTLHLV 224
Score = 31.1 bits (67), Expect = 0.56
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +3
Query: 180 DYNIQKESTLHLV 218
DYNIQKESTLHLV
Sbjct: 289 DYNIQKESTLHLV 301
>At3g09790.1 68416.m01163 polyubiquitin (UBQ8) identical to
polyubiquitin (ubq8) GI:870793, GB:L05917 [Arabidopsis
thaliana] (Genetics 139 (2), 921-939 (1995))
Length = 631
Score = 105 bits (251), Expect = 3e-23
Identities = 53/68 (77%), Positives = 58/68 (85%), Gaps = 2/68 (2%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL--YG 181
MQIFV+TLTGKTITLEV+ SDTI+NVKAKIQDKEGI P QQRLIFAGKQLEDGRTL Y
Sbjct: 79 MQIFVQTLTGKTITLEVKSSDTIDNVKAKIQDKEGILPRQQRLIFAGKQLEDGRTLADYN 138
Query: 182 LQYPEGIH 205
+Q +H
Sbjct: 139 IQKESTLH 146
Score = 92.7 bits (220), Expect = 2e-19
Identities = 47/68 (69%), Positives = 55/68 (80%), Gaps = 2/68 (2%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL--YG 181
+QI+ KTLT KTITL+VE SD+I NVKAKIQ+KEGIP +QQRLIFAGKQLEDG TL Y
Sbjct: 3 IQIYAKTLTEKTITLDVETSDSIHNVKAKIQNKEGIPLDQQRLIFAGKQLEDGLTLADYN 62
Query: 182 LQYPEGIH 205
+Q +H
Sbjct: 63 IQKESTLH 70
Score = 87.8 bits (208), Expect = 5e-18
Identities = 44/56 (78%), Positives = 47/56 (83%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL 175
MQIF+KTLTGKTI LEVE SDTI NVK KIQ KEGI P+QQ LIF G+QLEDG TL
Sbjct: 552 MQIFIKTLTGKTIILEVESSDTIANVKEKIQVKEGIKPDQQMLIFFGQQLEDGVTL 607
Score = 83.8 bits (198), Expect = 7e-17
Identities = 47/76 (61%), Positives = 54/76 (71%), Gaps = 4/76 (5%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI--PPNQQRLIFAGKQLEDGRTL-- 175
MQIFVKTLT K I LEVE DTIENVKA +QDKEGI PN QRLIF GK+L+DG TL
Sbjct: 319 MQIFVKTLTRKRINLEVESWDTIENVKAMVQDKEGIQPQPNLQRLIFLGKELKDGCTLAD 378
Query: 176 YGLQYPEGIHPPPGVE 223
Y +Q +H G++
Sbjct: 379 YSIQKESTLHLVLGMQ 394
Score = 81.0 bits (191), Expect = 5e-16
Identities = 42/68 (61%), Positives = 50/68 (73%), Gaps = 2/68 (2%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL--YG 181
MQIFVK GK ITLEV SDTI++VKAKIQDK G PP+QQ L+F G QL+DGRTL Y
Sbjct: 393 MQIFVKLFGGKIITLEVLSSDTIKSVKAKIQDKVGSPPDQQILLFRGGQLQDGRTLGDYN 452
Query: 182 LQYPEGIH 205
++ +H
Sbjct: 453 IRNESTLH 460
Score = 77.0 bits (181), Expect = 9e-15
Identities = 43/69 (62%), Positives = 53/69 (76%), Gaps = 9/69 (13%)
Frame = +2
Query: 8 MQIFVKTLTGK-----TITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQL--EDG 166
MQIFV T +GK T+TL+VE SDTIENVKAKIQD+EG+ P+ QRLIF G++L ED
Sbjct: 155 MQIFVSTFSGKNFTSDTLTLKVESSDTIENVKAKIQDREGLRPDHQRLIFHGEELFTEDN 214
Query: 167 RTL--YGLQ 187
RTL YG++
Sbjct: 215 RTLADYGIR 223
Score = 73.3 bits (172), Expect = 1e-13
Identities = 42/67 (62%), Positives = 47/67 (70%), Gaps = 7/67 (10%)
Frame = +2
Query: 8 MQIFVKTL-----TGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRT 172
M IFVK L TG+ LEVE SDTI+NVKAK+QDKE IP + RLIFAGK LE GRT
Sbjct: 238 MYIFVKNLPYNSFTGENFILEVESSDTIDNVKAKLQDKERIPMDLHRLIFAGKPLEGGRT 297
Query: 173 L--YGLQ 187
L Y +Q
Sbjct: 298 LAHYNIQ 304
Score = 72.1 bits (169), Expect = 2e-13
Identities = 44/75 (58%), Positives = 49/75 (65%), Gaps = 9/75 (12%)
Frame = +2
Query: 8 MQIFVKTL-------TGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDG 166
MQIFVKT T KTITLEVE SDTI+NVK KIQ K GIP ++QRLIF G+ L
Sbjct: 469 MQIFVKTFSFSGETPTCKTITLEVESSDTIDNVKVKIQHKVGIPLDRQRLIFGGRVLVGS 528
Query: 167 RTL--YGLQYPEGIH 205
RTL Y +Q IH
Sbjct: 529 RTLLDYNIQKGSTIH 543
Score = 31.9 bits (69), Expect = 0.32
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +3
Query: 87 KLKFKTKRESLPINRG*SLLESSWKMD-VPSTDYNIQKESTLHLV 218
K K + K E +P+++ + D + DYNIQKESTLHLV
Sbjct: 29 KAKIQNK-EGIPLDQQRLIFAGKQLEDGLTLADYNIQKESTLHLV 72
Score = 31.1 bits (67), Expect = 0.56
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +3
Query: 180 DYNIQKESTLHLV 218
DYNIQKESTLHLV
Sbjct: 136 DYNIQKESTLHLV 148
>At1g53930.1 68414.m06139 ubiquitin family protein contains Pfam
profile: PF00240 ubiquitin family
Length = 158
Score = 91.5 bits (217), Expect = 4e-19
Identities = 46/68 (67%), Positives = 53/68 (77%), Gaps = 2/68 (2%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL--YG 181
M IF+KTLTG+ I LEVE DTIEN+KAKIQDK+GIP +QQRLIF GKQLEDG TL Y
Sbjct: 86 MFIFIKTLTGRRIVLEVENCDTIENIKAKIQDKQGIPVDQQRLIFKGKQLEDGLTLADYN 145
Query: 182 LQYPEGIH 205
+Q +H
Sbjct: 146 IQNDSILH 153
>At1g11980.1 68414.m01384 ubiquitin family protein similar to Chain
A, Structure Of Ubiquitin-Like Protein, Rub1 GI:6729726
from [Arabidopsis thaliana]
Length = 78
Score = 70.1 bits (164), Expect = 1e-12
Identities = 34/68 (50%), Positives = 47/68 (69%), Gaps = 2/68 (2%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL--YG 181
M+I VKTLT K I +E+E +DTIE +K +I++KEGIPP QR+++ GKQL D T Y
Sbjct: 1 MEIKVKTLTEKQIDIEIELTDTIERIKERIEEKEGIPPVHQRIVYTGKQLADDLTAKHYN 60
Query: 182 LQYPEGIH 205
L+ +H
Sbjct: 61 LERGSVLH 68
>At1g53950.1 68414.m06145 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 216
Score = 66.5 bits (155), Expect = 1e-11
Identities = 31/48 (64%), Positives = 38/48 (79%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGK 151
M IF+KTLTG+T T EV+ SDTI +KAK ++KEGIP QQRLIF G+
Sbjct: 50 MMIFIKTLTGRTNTYEVKGSDTIRELKAKHEEKEGIPVEQQRLIFQGR 97
Score = 50.8 bits (116), Expect = 6e-07
Identities = 26/58 (44%), Positives = 38/58 (65%)
Frame = +2
Query: 2 VKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL 175
V M+IFV T+ KT LEV+ SDTI+ +K+ I D+ G P +QQ L G +L++ T+
Sbjct: 139 VLMRIFVSTIKEKTFILEVKGSDTIKKLKSMIHDQGGPPVDQQDLNHLGTKLKNNATI 196
Score = 28.3 bits (60), Expect = 3.9
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVK 88
M I +KTL GK I LEVE S ++K
Sbjct: 1 MHISIKTLEGKRIKLEVEDSSNTIDLK 27
>At4g12570.1 68417.m01983 ubiquitin-protein ligase, putative similar
to SP|P39940 Ubiquitin--protein ligase RSP5 (EC 6.3.2.-)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00240: Ubiquitin family, PF00632: HECT-domain
(ubiquitin-transferase)
Length = 873
Score = 50.8 bits (116), Expect = 6e-07
Identities = 26/64 (40%), Positives = 42/64 (65%), Gaps = 3/64 (4%)
Frame = +2
Query: 5 KMQIFVKTLTG-KTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQL--EDGRTL 175
++QIFV+ ++G KTI + E DT+E + +I+ K IP +QR+I+ GKQL E+ T
Sbjct: 94 RLQIFVRMMSGGKTIVIHAEKYDTVEKLHQRIEWKTKIPALEQRVIYKGKQLQRENSLTY 153
Query: 176 YGLQ 187
Y ++
Sbjct: 154 YSIE 157
>At5g42220.1 68418.m05139 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 879
Score = 50.0 bits (114), Expect = 1e-06
Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL--YG 181
+++ +KTL +T T +V ++T+ K KI + G+P QQRLIF G+ L+D L Y
Sbjct: 24 LELNIKTLDSRTYTFQVNKNETVLLFKEKIASETGVPVGQQRLIFRGRVLKDDHPLSEYH 83
Query: 182 LQYPEGIH 205
L+ +H
Sbjct: 84 LENGHTLH 91
>At5g38470.1 68418.m04650 DNA repair protein RAD23, putative similar
to DNA repair by nucleotide excision (NER) RAD23
protein, isoform I GI:1914683 from [Daucus carota]
Length = 378
Score = 50.0 bits (114), Expect = 1e-06
Identities = 26/58 (44%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG--IPPNQQRLIFAGKQLEDGRTL 175
M+IFVKTL+G +EV+P+D + +VK I+ +G P +Q LI GK L+D TL
Sbjct: 1 MKIFVKTLSGSNFEIEVKPADKVSDVKTAIETVKGAEYPAAKQMLIHQGKVLKDETTL 58
>At3g02540.2 68416.m00243 ubiquitin family protein contains Pfam
profiles PF00240: Ubiquitin family, PF00627: UBA/TS-N
domain;
Length = 299
Score = 46.8 bits (106), Expect = 1e-05
Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 3/59 (5%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPNQQRLIFAGKQLEDGRTL 175
M+IFVKTL G +EV+P D++ +VK I+ +G P +Q LI GK L+D T+
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDSVVDVKKNIESVQGADVYPAAKQMLIHQGKVLKDETTI 59
>At3g02540.1 68416.m00242 ubiquitin family protein contains Pfam
profiles PF00240: Ubiquitin family, PF00627: UBA/TS-N
domain;
Length = 419
Score = 46.8 bits (106), Expect = 1e-05
Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 3/59 (5%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPNQQRLIFAGKQLEDGRTL 175
M+IFVKTL G +EV+P D++ +VK I+ +G P +Q LI GK L+D T+
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDSVVDVKKNIESVQGADVYPAAKQMLIHQGKVLKDETTI 59
>At2g17190.1 68415.m01985 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 538
Score = 46.4 bits (105), Expect = 1e-05
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Frame = +2
Query: 2 VKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL-- 175
V + + V+ G ++ T+E+ K I +P NQQRLI+ G+ L+D +TL
Sbjct: 16 VAVAVNVRCSNGTKFSVTTSLDSTVESFKELIAQNSDVPANQQRLIYKGRILKDDQTLLS 75
Query: 176 YGLQYPEGIH 205
YGLQ +H
Sbjct: 76 YGLQADHTVH 85
>At2g17200.1 68415.m01986 ubiquitin family protein weak similarity
to PLIC-2 (ubiquitin-like type II) [Homo sapiens]
GI:9937505; contains Pfam profiles PF00240: Ubiquitin
family, PF00627: UBA/TS-N domain
Length = 551
Score = 45.6 bits (103), Expect = 2e-05
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Frame = +2
Query: 20 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL--YGLQYP 193
++ G +++ T+E+ K + +P NQQRLI+ G+ L+D +TL YGLQ
Sbjct: 22 IRCSNGTKFSVKTSLDSTVESFKELVAQSSDVPANQQRLIYKGRILKDDQTLLSYGLQAD 81
Query: 194 EGIH 205
IH
Sbjct: 82 HTIH 85
>At3g13235.1 68416.m01666 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 414
Score = 45.2 bits (102), Expect = 3e-05
Identities = 21/59 (35%), Positives = 37/59 (62%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLYGL 184
M+I V T + ITL+V+ +T+ENVKA ++ + +P QQ+L++ G ++ + L L
Sbjct: 1 MRITVMTAGEQIITLDVDSQETVENVKALLEVESNVPIQQQQLLYNGNEMGNSDKLSAL 59
>At1g79650.3 68414.m09289 DNA repair protein RAD23, putative similar
to DNA repair by nucleotide excision (NER) RAD23
protein, isoform II GI:1914685 from [Daucus carota];
contains Pfam profiles PF00240: Ubiquitin family,
PF00627: UBA/TS-N domain
Length = 351
Score = 45.2 bits (102), Expect = 3e-05
Identities = 27/59 (45%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPNQQRLIFAGKQLEDGRTL 175
M++ VKTL G + V PSDTI VK I+D +G P QQ LI GK L+D +L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSL 59
>At1g79650.2 68414.m09288 DNA repair protein RAD23, putative similar
to DNA repair by nucleotide excision (NER) RAD23
protein, isoform II GI:1914685 from [Daucus carota];
contains Pfam profiles PF00240: Ubiquitin family,
PF00627: UBA/TS-N domain
Length = 365
Score = 45.2 bits (102), Expect = 3e-05
Identities = 27/59 (45%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPNQQRLIFAGKQLEDGRTL 175
M++ VKTL G + V PSDTI VK I+D +G P QQ LI GK L+D +L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSL 59
>At1g79650.1 68414.m09287 DNA repair protein RAD23, putative similar
to DNA repair by nucleotide excision (NER) RAD23
protein, isoform II GI:1914685 from [Daucus carota];
contains Pfam profiles PF00240: Ubiquitin family,
PF00627: UBA/TS-N domain
Length = 371
Score = 45.2 bits (102), Expect = 3e-05
Identities = 27/59 (45%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPNQQRLIFAGKQLEDGRTL 175
M++ VKTL G + V PSDTI VK I+D +G P QQ LI GK L+D +L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSL 59
>At1g16190.1 68414.m01939 DNA repair protein RAD23, putative similar
to DNA repair by nucleotide excision (NER) RAD23
protein, isoform II GI:1914685 from [Daucus carota]
Length = 368
Score = 45.2 bits (102), Expect = 3e-05
Identities = 27/59 (45%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPNQQRLIFAGKQLEDGRTL 175
M++ VKTL G + V P+DTI VK I+D K+ P QQ LI GK L+D TL
Sbjct: 1 MKLTVKTLKGSHFEIRVLPTDTIMAVKKNIEDSQSKDNYPCGQQLLIHNGKVLKDETTL 59
>At4g02970.1 68417.m00404 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 270
Score = 44.8 bits (101), Expect = 4e-05
Identities = 18/52 (34%), Positives = 33/52 (63%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLED 163
M +++ T TG + ++ ++ +T+ +K KI+ +GIP ++Q L GK LED
Sbjct: 1 MNVYIDTETGSSFSITIDFGETVLEIKEKIEKSQGIPVSKQILYLDGKALED 52
>At4g03360.1 68417.m00458 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 284
Score = 43.2 bits (97), Expect = 1e-04
Identities = 19/60 (31%), Positives = 37/60 (61%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLYGLQ 187
+++ ++ +G + T++V DT+ +K KI+ +G P ++Q LIF K L+D ++G Q
Sbjct: 2 IKVIIENQSGSSFTIDVSFWDTVLMIKRKIEMTQGTPVSKQILIFKRKVLQDHLNMFGCQ 61
>At4g05230.1 68417.m00789 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 206
Score = 42.7 bits (96), Expect = 2e-04
Identities = 19/52 (36%), Positives = 32/52 (61%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLED 163
M +F +T +G T +E+ DT+ +K KI+ + IP ++Q L+F G L+D
Sbjct: 1 MDVFFETRSGSTFEIELGYWDTVLEIKQKIEKYQRIPVSKQTLLFQGNVLQD 52
>At4g02950.1 68417.m00402 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 318
Score = 42.7 bits (96), Expect = 2e-04
Identities = 19/60 (31%), Positives = 36/60 (60%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLYGLQ 187
+ + ++ +G + T++V DT+ +K KI+ +G P ++Q LIF K L+D ++G Q
Sbjct: 36 ISVIIENQSGSSFTIDVSFWDTVLMIKRKIEMTQGTPVSKQILIFKRKVLQDHLNMFGCQ 95
>At4g03350.1 68417.m00457 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 263
Score = 42.3 bits (95), Expect = 2e-04
Identities = 18/52 (34%), Positives = 32/52 (61%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLED 163
M + + T TG + ++ ++ +T+ +K KI+ +GIP ++Q L GK LED
Sbjct: 1 MNVDIDTETGSSFSITIDFGETVLQIKEKIEKSQGIPVSKQILYLDGKALED 52
>At4g01000.1 68417.m00135 ubiquitin family protein low similarity to
SP|P13117 Ubiquitin. {Neurospora crassa}; contains Pfam
profile PF00240: Ubiquitin family
Length = 415
Score = 41.5 bits (93), Expect = 4e-04
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVE-PSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL 175
+Q FV+ L GK++TL P E +K +I ++ IP + QRLI G Q+ DG +
Sbjct: 9 LQFFVRLLDGKSLTLSFSSPLAYGEQIKQRIFEQTKIPTHLQRLISGGYQISDGSAI 65
>At2g30100.1 68415.m03663 ubiquitin family protein low similarity to
SP|Q9UQ13 Leucine-rich repeat protein SHOC-2
(Ras-binding protein Sur-8) {Homo sapiens}; contains
Pfam profiles PF00240: Ubiquitin family, PF01535: PPR
repeat, PF00560: Leucine Rich Repeat
Length = 897
Score = 40.7 bits (91), Expect = 7e-04
Identities = 19/47 (40%), Positives = 30/47 (63%)
Frame = +2
Query: 35 GKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTL 175
GK+I L V P T++++K+++Q + P Q+LIF GK L + TL
Sbjct: 544 GKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTL 590
>At4g03370.1 68417.m00459 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 295
Score = 39.9 bits (89), Expect = 0.001
Identities = 18/52 (34%), Positives = 32/52 (61%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLED 163
M++ V+ +G T ++++ DT+ K KI+ + IP ++Q + F GK LED
Sbjct: 1 MKMTVENESGSTFSIDIGLQDTVLTFKRKIEMTQRIPVSRQTIFFQGKLLED 52
>At5g16090.1 68418.m01880 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 142
Score = 39.1 bits (87), Expect = 0.002
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPNQQRLIFAGKQLEDGRTL 175
M+I VKTL G +EV+P+D++ VK I+ G P QQ LI ++L D T+
Sbjct: 1 MKIIVKTLKGIRFEIEVKPNDSVAEVKKNIETVMGASEYPAAQQILIHKREKLRDETTM 59
>At1g53980.1 68414.m06149 polyubiquitin-related contains similarity
to polyubiquitin GI:166336 from (Aglaothamnion
neglectum)
Length = 91
Score = 39.1 bits (87), Expect = 0.002
Identities = 20/38 (52%), Positives = 25/38 (65%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 121
M IFV TL GKT LEV+ S+ I+ VK I D+ +PP
Sbjct: 49 MSIFVSTLKGKTFNLEVKGSEIIQQVKNMIHDQ--VPP 84
Score = 28.7 bits (61), Expect = 3.0
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVK 88
M+I +KT GKTI LE+E S ++K
Sbjct: 1 MKILIKTEKGKTINLELEDSSETIDIK 27
>At4g05250.1 68417.m00793 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 318
Score = 38.7 bits (86), Expect = 0.003
Identities = 19/52 (36%), Positives = 31/52 (59%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLED 163
M +F +T +G +E+ DT+ +K KI+ + IP ++Q LIF G L+D
Sbjct: 1 MDVFFETQSGDKFEIELGYWDTMLEIKEKIEKYQCIPVSKQTLIFQGVVLQD 52
>At4g05310.1 68417.m00809 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 415
Score = 37.1 bits (82), Expect = 0.008
Identities = 18/47 (38%), Positives = 29/47 (61%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAG 148
M+ V+ L G + +EVE +DT+ VK KI+ + +P ++Q LI G
Sbjct: 1 MKFVVEILGGSSFEIEVERTDTLLVVKQKIEKSQRVPVSKQTLIVDG 47
>At4g05270.1 68417.m00797 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 129
Score = 37.1 bits (82), Expect = 0.008
Identities = 19/47 (40%), Positives = 28/47 (59%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAG 148
M+ V+ L G + LEV+ DT+ VK KI+ + IP ++Q LI G
Sbjct: 1 MKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDG 47
>At5g51590.1 68418.m06396 DNA-binding protein-related contains Pfam
domain PF03479: Domain of unknown function (DUF296),
found in AT-hook motifs Pfam:PF02178
Length = 419
Score = 36.3 bits (80), Expect = 0.015
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +2
Query: 20 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRL-IFAGKQLEDGRTLYGLQYPE 196
V+ + G I + E + +K + +++ GIP Q I G ED + YGL P
Sbjct: 286 VQVMVGSFIAGQEESQQQQQQIKKQRRERLGIPTTTQASNISFGGSAEDPKARYGLNKPV 345
Query: 197 GIHPPP 214
I PPP
Sbjct: 346 VIQPPP 351
>At3g06455.1 68416.m00747 splicing factor-related contains weak
similarity to Swiss-Prot:Q12874 splicing factor 3A
subunit 3 (Spliceosome associated protein 61, SAP 61,
SF3a60) [Homo sapiens]
Length = 366
Score = 36.3 bits (80), Expect = 0.015
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEV-EPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQL 157
+Q FV+ L GK++TL P E +K +I ++ IP + QRLI G Q+
Sbjct: 9 LQFFVRLLDGKSVTLTFSSPIACGEQIKQRIFEQTKIPTHLQRLISGGFQI 59
>At5g14360.1 68418.m01678 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 163
Score = 35.5 bits (78), Expect = 0.026
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +2
Query: 50 LEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLY 178
L +E + T +K + G+ P QQRL+F GK+ ED L+
Sbjct: 83 LSIEATSTFGELKMVLSLLTGLEPKQQRLVFKGKEREDHEYLH 125
>At5g09340.1 68418.m01082 ubiquitin, putative similar to ubiquitin
SP:P42740 from [Aglaothamnion neglectum]
Length = 79
Score = 35.1 bits (77), Expect = 0.034
Identities = 19/48 (39%), Positives = 26/48 (54%)
Frame = +2
Query: 8 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGK 151
MQ+F+ GK +EVE + TI ++K KI D G+ Q L GK
Sbjct: 1 MQVFIIDEDGKKYCVEVEKTTTIADMKTKIYDATGMENAYQYLEHRGK 48
>At5g40630.1 68418.m04932 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 165
Score = 34.3 bits (75), Expect = 0.060
Identities = 17/60 (28%), Positives = 31/60 (51%)
Frame = +2
Query: 20 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLYGLQYPEG 199
V T++ + + ++ + T +K I GI +QRL+F GK+ ED L+ + +G
Sbjct: 83 VSTVSQLSYEISIDANSTFGELKMMIAIVSGIEAKEQRLLFRGKEREDREYLHMIGVGDG 142
>At1g26270.1 68414.m03205 phosphatidylinositol 3- and 4-kinase
family protein similar to phosphatidylinositol 4-kinase
type-II beta [Homo sapiens] GI:20159767; contains Pfam
profile PF00454: Phosphatidylinositol 3- and 4-kinase
Length = 630
Score = 34.3 bits (75), Expect = 0.060
Identities = 18/56 (32%), Positives = 29/56 (51%)
Frame = +2
Query: 5 KMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRT 172
+ ++FV+T TG + LE++ SD VK K+Q P + L F L++ T
Sbjct: 40 RRRVFVQTETGCVLGLELDRSDNAHTVKRKLQVALNFPIEESSLTFGDLVLKNDLT 95
>At1g11970.1 68414.m01383 hypothetical protein
Length = 99
Score = 32.3 bits (70), Expect = 0.24
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = +2
Query: 29 LTGKTITLEVEPSDTIENVKAKIQDKEGIP 118
L+ K I +E++P D IE +K I+++ GIP
Sbjct: 50 LSEKKIDIEIDPMDKIEQIKEGIEEEIGIP 79
>At2g12550.1 68415.m01357 ubiquitin-associated (UBA)/TS-N
domain-containing protein low similarity to NUB1
(NEDD8-interacting protein) [Homo sapiens] GI:13383476;
contains Pfam profile PF00627: UBA/TS-N domain
Length = 562
Score = 30.3 bits (65), Expect = 0.97
Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +2
Query: 50 LEVEPSD-TIENVKAKIQDKEGIPPNQQRLIFAGKQLED 163
LEVE + T+ ++ ++ + G+ P +LIFAGK L+D
Sbjct: 14 LEVELENWTLNMLRDEVAKRSGLDPESIKLIFAGKILKD 52
>At1g22050.1 68414.m02758 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 119
Score = 29.1 bits (62), Expect = 2.2
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 7/50 (14%)
Frame = +2
Query: 65 SDTIENVKAKI-----QDKEGIPP--NQQRLIFAGKQLEDGRTLYGLQYP 193
S T+ ++K K+ +DKE P N +LI AGK LE+ RTL + P
Sbjct: 28 SMTVSSLKEKLISQWPKDKENTPKTVNDMKLINAGKILENNRTLAESRLP 77
>At2g25840.2 68415.m03101 tRNA synthetase class I (W and Y) family
protein contains Pfam profile: PF00579 tRNA synthetases
class I (W and Y)
Length = 412
Score = 28.3 bits (60), Expect = 3.9
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -3
Query: 490 LEGTYLFVVVFEDHRAVTLPAVVTVLHHRHEHSGAALLACAL 365
L+ TY + + DH A+TLP L + A LAC +
Sbjct: 92 LQDTYETLFIIVDHHAITLPYDTRQLGKATTDTAALYLACGI 133
>At2g25840.1 68415.m03100 tRNA synthetase class I (W and Y) family
protein contains Pfam profile: PF00579 tRNA synthetases
class I (W and Y)
Length = 408
Score = 28.3 bits (60), Expect = 3.9
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -3
Query: 490 LEGTYLFVVVFEDHRAVTLPAVVTVLHHRHEHSGAALLACAL 365
L+ TY + + DH A+TLP L + A LAC +
Sbjct: 92 LQDTYETLFIIVDHHAITLPYDTRQLGKATTDTAALYLACGI 133
>At5g49910.1 68418.m06180 heat shock protein 70 / HSP70 (HSC70-7)
identical to heat shock protein 70 [Arabidopsis
thaliana] GI:6746592
Length = 718
Score = 27.9 bits (59), Expect = 5.2
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 7/63 (11%)
Frame = +2
Query: 62 PSDTIENVKAKIQD-KEGIPPNQQRLI------FAGKQLEDGRTLYGLQYPEGIHPPPGV 220
P E V+AK+Q+ KE I + I + ++ G++LY P G PPG
Sbjct: 629 PGPVKEKVEAKLQELKEKIASGSTQEIKDTMAALNQEVMQIGQSLYNQPQPGGADSPPGG 688
Query: 221 EAS 229
EAS
Sbjct: 689 EAS 691
>At3g16470.1 68416.m02101 jacalin lectin family protein contains
Pfam profile: PF01419 jacalin-like lectin domain;
similar to myrosinase-binding protein homolog
[Arabidopsis thaliana] GI:2997767
Length = 451
Score = 27.1 bits (57), Expect = 9.0
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -3
Query: 559 SSDTVSRFYLKSIIHSSASVPYRLEGTYLFVVVFEDHRAV 440
S D + LK + S+PY LEG FV+ +DH+ V
Sbjct: 390 SVDAPAIVSLKFKTNKRTSIPYGLEGGTEFVLEKKDHKIV 429
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,458,421
Number of Sequences: 28952
Number of extensions: 252048
Number of successful extensions: 856
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1131744440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -