Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00003
(711 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19135| Best HMM Match : Ribosomal_L13e (HMM E-Value=0) 109 2e-24
SB_12085| Best HMM Match : TBP (HMM E-Value=3.5e-35) 34 0.13
SB_34101| Best HMM Match : K_tetra (HMM E-Value=3.5e-40) 33 0.30
SB_16503| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_43676| Best HMM Match : Ion_trans (HMM E-Value=1.2e-39) 30 1.6
SB_31789| Best HMM Match : Ion_trans (HMM E-Value=6.3e-37) 30 1.6
SB_53498| Best HMM Match : Ion_trans (HMM E-Value=8.9e-32) 30 1.6
SB_3223| Best HMM Match : Ion_trans (HMM E-Value=0) 30 2.1
SB_11931| Best HMM Match : Ion_trans (HMM E-Value=0) 29 4.9
SB_22350| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_13958| Best HMM Match : K_tetra (HMM E-Value=7.00649e-45) 28 6.5
SB_47320| Best HMM Match : Ion_trans (HMM E-Value=2.7e-34) 28 6.5
SB_16060| Best HMM Match : Protamine_P1 (HMM E-Value=7.8) 28 6.5
SB_3220| Best HMM Match : Ion_trans (HMM E-Value=5.6e-22) 28 6.5
>SB_19135| Best HMM Match : Ribosomal_L13e (HMM E-Value=0)
Length = 600
Score = 109 bits (262), Expect = 2e-24
Identities = 48/79 (60%), Positives = 57/79 (72%)
Frame = +2
Query: 20 KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 199
K NN+IPNGHFHKDWQR+VKTWF+QP R+ RR+ R LRPIVRCPT
Sbjct: 4 KRNNIIPNGHFHKDWQRYVKTWFDQPGRKKRRRVARQIKAAKIAPRPVAGSLRPIVRCPT 63
Query: 200 VRYHTKVRAGRGFTLREIR 256
+Y+TKVRAGRGFTL E++
Sbjct: 64 FKYNTKVRAGRGFTLDELK 82
Score = 83.0 bits (196), Expect = 2e-16
Identities = 42/86 (48%), Positives = 60/86 (69%), Gaps = 1/86 (1%)
Frame = +3
Query: 279 ARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFP-KGKKVLKGEANEEERKLATQL 455
A TIGIAVD RR+N+S ESLQ NVQR+KEY+++LI+FP K K +G++ + A QL
Sbjct: 91 APTIGIAVDHRRKNRSAESLQANVQRLKEYKSKLIVFPRKANKPKQGDSEAADLANAVQL 150
Query: 456 RGPLMPVQQPAPKSVARPSLKMKRTS 533
+GP+MP+ Q + ARP + ++ S
Sbjct: 151 QGPVMPIPQESVPIKARPITEDEKKS 176
>SB_12085| Best HMM Match : TBP (HMM E-Value=3.5e-35)
Length = 440
Score = 33.9 bits (74), Expect = 0.13
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +3
Query: 294 IAVDPRRRNKSVESLQINVQRIKEYRARLILFPKGKKVLKGEANEEERKLATQ 452
IA+ R + + + RI+E R ++F GK V G +EE+ KLA +
Sbjct: 301 IALQARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSKLAAR 353
>SB_34101| Best HMM Match : K_tetra (HMM E-Value=3.5e-40)
Length = 440
Score = 32.7 bits (71), Expect = 0.30
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -1
Query: 342 FAMIQQTCCVYGDLQQFQSFGQILGSICGLISRRVNPLPARTL 214
+A++ T YGD+ + GQ++GS C ++ V LP L
Sbjct: 363 YAIVTMTTTGYGDMTPETAIGQLMGSFCCIVGTLVIALPVPIL 405
>SB_16503| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 626
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = -1
Query: 342 FAMIQQTCCVYGDLQQFQSFGQILGSICGLISRRVNPLPARTLV 211
+A++ T YGD++ +G+I+GS+C + LP +V
Sbjct: 466 WAVVTMTTVGYGDMRPITVWGKIVGSLCAISGVLTIALPVPVIV 509
>SB_43676| Best HMM Match : Ion_trans (HMM E-Value=1.2e-39)
Length = 605
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = -1
Query: 342 FAMIQQTCCVYGDLQQFQSFGQILGSICGLISRRVNPLPARTL 214
+A+I T YGD+ GQI+GS+C + + LP +
Sbjct: 370 WAIITMTTVGYGDMSPKTLSGQIIGSLCAICGVLIIGLPVSVI 412
>SB_31789| Best HMM Match : Ion_trans (HMM E-Value=6.3e-37)
Length = 583
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -1
Query: 342 FAMIQQTCCVYGDLQQFQSFGQILGSICGLISRRVNPLP 226
+ ++ T YGD+ G+I+GS+C LI + LP
Sbjct: 365 YTLVTMTTLGYGDIVPVTFLGKIIGSMCALIGVLLLALP 403
>SB_53498| Best HMM Match : Ion_trans (HMM E-Value=8.9e-32)
Length = 294
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -1
Query: 342 FAMIQQTCCVYGDLQQFQSFGQILGSICGLISRRVNPLP 226
+ ++ T YGD+ G+I+GS+C LI + LP
Sbjct: 180 YTLVTMTTLGYGDITPVTFVGKIIGSMCALIGVLLLALP 218
>SB_3223| Best HMM Match : Ion_trans (HMM E-Value=0)
Length = 486
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = -1
Query: 342 FAMIQQTCCVYGDLQQFQSFGQILGSICGLISRRVNPLPARTLV 211
+A++ T YGD+ +G+++GSIC + LP +V
Sbjct: 372 WAVVTMTTVGYGDMYPVTPWGKLVGSICAISGVLTIALPVPVIV 415
>SB_11931| Best HMM Match : Ion_trans (HMM E-Value=0)
Length = 475
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -1
Query: 342 FAMIQQTCCVYGDLQQFQSFGQILGSICGLISRRVNPLPARTLV 211
+A++ T YGDL +G+++GS C L LP +V
Sbjct: 414 WALVTMTTVGYGDLVPKTLWGKLVGSCCALCGVLAIALPVPVIV 457
>SB_22350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1967
Score = 28.3 bits (60), Expect = 6.5
Identities = 24/104 (23%), Positives = 46/104 (44%)
Frame = +3
Query: 234 DSLFVKLGRRLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFPKGKKVLK 413
+S+ KL + + V +T + + ESL++ ++IKE +A+L+ +++ +
Sbjct: 1092 ESMSSKLEQTVKEVEIKTSELETRAGETLLAKESLEVANKKIKELQAQLL---TARELTQ 1148
Query: 414 GEANEEERKLATQLRGPLMPVQQPAPKSVARPSLKMKRTSKLIN 545
E +E LR L S +LK R +L+N
Sbjct: 1149 QECVSKEASEVANLRDALEKANSKVAHSEEILALKAARLKELVN 1192
>SB_13958| Best HMM Match : K_tetra (HMM E-Value=7.00649e-45)
Length = 623
Score = 28.3 bits (60), Expect = 6.5
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -1
Query: 342 FAMIQQTCCVYGDLQQFQSFGQILGSICGLISRRVNPLPARTLV 211
+ ++ T YGD+ G+I+GS+C L V LP +V
Sbjct: 355 YTIVTMTTLGYGDMVPTTVPGKIVGSLCSLSGVLVIALPVPVIV 398
>SB_47320| Best HMM Match : Ion_trans (HMM E-Value=2.7e-34)
Length = 946
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -1
Query: 342 FAMIQQTCCVYGDLQQFQSFGQILGSICGLISRRVNPLP 226
+ ++ T YGD+ G+ILG +C L+ V LP
Sbjct: 249 YTIVTTTTLGYGDMVPLTVVGKILGGMCCLMGALVVSLP 287
>SB_16060| Best HMM Match : Protamine_P1 (HMM E-Value=7.8)
Length = 91
Score = 28.3 bits (60), Expect = 6.5
Identities = 21/57 (36%), Positives = 29/57 (50%)
Frame = +3
Query: 279 ARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFPKGKKVLKGEANEEERKLAT 449
AR I +A+ RR + S+Q + EY R KG+KV KG +ERK A+
Sbjct: 17 ARRIRLAIFSRRLKFARTSVQNRQRNQAEYSER-----KGRKVRKGRKVRKERKPAS 68
>SB_3220| Best HMM Match : Ion_trans (HMM E-Value=5.6e-22)
Length = 256
Score = 28.3 bits (60), Expect = 6.5
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = -1
Query: 342 FAMIQQTCCVYGDLQQFQSFGQILGSICGLISRRVNPLPARTLV 211
+A++ T YGD+ +G+I+G++C + LP +V
Sbjct: 145 WAVVTMTTVGYGDISPESFWGKIVGALCAISGVLTIALPVPVIV 188
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,760,394
Number of Sequences: 59808
Number of extensions: 389352
Number of successful extensions: 1126
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1119
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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