Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00003
(711 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U88308-8|AAO61436.1| 88|Caenorhabditis elegans Ribosomal prote... 91 9e-19
U88308-7|AAB42322.1| 207|Caenorhabditis elegans Ribosomal prote... 91 9e-19
Z48584-8|CAK55179.1| 435|Caenorhabditis elegans Hypothetical pr... 33 0.15
Z48584-7|CAH04712.1| 448|Caenorhabditis elegans Hypothetical pr... 33 0.15
Z48584-5|CAD57717.1| 501|Caenorhabditis elegans Hypothetical pr... 33 0.15
Z48584-4|CAD57716.1| 536|Caenorhabditis elegans Hypothetical pr... 33 0.15
Z48584-3|CAD57715.1| 524|Caenorhabditis elegans Hypothetical pr... 33 0.15
Z48584-2|CAA88477.2| 481|Caenorhabditis elegans Hypothetical pr... 33 0.15
Z68010-3|CAA92011.1| 558|Caenorhabditis elegans Hypothetical pr... 32 0.35
Z67756-4|CAA91765.1| 558|Caenorhabditis elegans Hypothetical pr... 32 0.35
AF005246-1|AAB95119.1| 556|Caenorhabditis elegans voltage-depen... 32 0.35
Z78016-5|CAB01442.2| 479|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z82083-6|CAB04974.1| 388|Caenorhabditis elegans Hypothetical pr... 29 4.3
Z81082-6|CAB03098.1| 279|Caenorhabditis elegans Hypothetical pr... 29 4.3
AL132898-13|CAB60948.2| 152|Caenorhabditis elegans Hypothetical... 29 4.3
AL034543-5|CAA22519.1| 279|Caenorhabditis elegans Hypothetical ... 29 4.3
AL034543-1|CAA22516.1| 243|Caenorhabditis elegans Hypothetical ... 29 4.3
Z54327-13|CAE48494.1| 619|Caenorhabditis elegans Hypothetical p... 28 7.6
Z54307-9|CAE48498.1| 619|Caenorhabditis elegans Hypothetical pr... 28 7.6
AC084197-25|AAK68591.1| 609|Caenorhabditis elegans Hypothetical... 28 7.6
>U88308-8|AAO61436.1| 88|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 13, isoform b protein.
Length = 88
Score = 90.6 bits (215), Expect = 9e-19
Identities = 38/79 (48%), Positives = 51/79 (64%)
Frame = +2
Query: 20 KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 199
+GN M+ N HF K W + +KTWF+QPAR+ RR+QNR LR +VRCP
Sbjct: 4 RGNQMLGNAHFRKHWHKRIKTWFDQPARKLRRRQNRQAKAVEIAPRPVAGLLRSVVRCPQ 63
Query: 200 VRYHTKVRAGRGFTLREIR 256
RY+TK R GRGF+L+E++
Sbjct: 64 KRYNTKTRLGRGFSLQELK 82
>U88308-7|AAB42322.1| 207|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 13, isoform a protein.
Length = 207
Score = 90.6 bits (215), Expect = 9e-19
Identities = 38/79 (48%), Positives = 51/79 (64%)
Frame = +2
Query: 20 KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 199
+GN M+ N HF K W + +KTWF+QPAR+ RR+QNR LR +VRCP
Sbjct: 4 RGNQMLGNAHFRKHWHKRIKTWFDQPARKLRRRQNRQAKAVEIAPRPVAGLLRSVVRCPQ 63
Query: 200 VRYHTKVRAGRGFTLREIR 256
RY+TK R GRGF+L+E++
Sbjct: 64 KRYNTKTRLGRGFSLQELK 82
Score = 78.2 bits (184), Expect = 5e-15
Identities = 38/67 (56%), Positives = 50/67 (74%), Gaps = 1/67 (1%)
Frame = +3
Query: 279 ARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFP-KGKKVLKGEANEEERKLATQL 455
ARTIGIAVD RR NK+ E L+ N R+KEY+A+LILFP K KG+++ EE K+A QL
Sbjct: 91 ARTIGIAVDVRRTNKTAEGLKANADRLKEYKAKLILFPKKASAPKKGDSSAEELKVAAQL 150
Query: 456 RGPLMPV 476
RG ++P+
Sbjct: 151 RGDVLPL 157
>Z48584-8|CAK55179.1| 435|Caenorhabditis elegans Hypothetical
protein ZK1321.2f protein.
Length = 435
Score = 33.5 bits (73), Expect = 0.15
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -1
Query: 342 FAMIQQTCCVYGDLQQFQSFGQILGSICGLISRRVNPLPARTLV 211
F ++ T YGDL FG+++G +C +I LP +V
Sbjct: 364 FVLVTMTTVGYGDLVPLSPFGKVVGGMCAMIGVLTLALPVPIIV 407
>Z48584-7|CAH04712.1| 448|Caenorhabditis elegans Hypothetical
protein ZK1321.2e protein.
Length = 448
Score = 33.5 bits (73), Expect = 0.15
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -1
Query: 342 FAMIQQTCCVYGDLQQFQSFGQILGSICGLISRRVNPLPARTLV 211
F ++ T YGDL FG+++G +C +I LP +V
Sbjct: 377 FVLVTMTTVGYGDLVPLSPFGKVVGGMCAMIGVLTLALPVPIIV 420
>Z48584-5|CAD57717.1| 501|Caenorhabditis elegans Hypothetical
protein ZK1321.2d protein.
Length = 501
Score = 33.5 bits (73), Expect = 0.15
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -1
Query: 342 FAMIQQTCCVYGDLQQFQSFGQILGSICGLISRRVNPLPARTLV 211
F ++ T YGDL FG+++G +C +I LP +V
Sbjct: 430 FVLVTMTTVGYGDLVPLSPFGKVVGGMCAMIGVLTLALPVPIIV 473
>Z48584-4|CAD57716.1| 536|Caenorhabditis elegans Hypothetical
protein ZK1321.2c protein.
Length = 536
Score = 33.5 bits (73), Expect = 0.15
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -1
Query: 342 FAMIQQTCCVYGDLQQFQSFGQILGSICGLISRRVNPLPARTLV 211
F ++ T YGDL FG+++G +C +I LP +V
Sbjct: 465 FVLVTMTTVGYGDLVPLSPFGKVVGGMCAMIGVLTLALPVPIIV 508
>Z48584-3|CAD57715.1| 524|Caenorhabditis elegans Hypothetical
protein ZK1321.2b protein.
Length = 524
Score = 33.5 bits (73), Expect = 0.15
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -1
Query: 342 FAMIQQTCCVYGDLQQFQSFGQILGSICGLISRRVNPLPARTLV 211
F ++ T YGDL FG+++G +C +I LP +V
Sbjct: 453 FVLVTMTTVGYGDLVPLSPFGKVVGGMCAMIGVLTLALPVPIIV 496
>Z48584-2|CAA88477.2| 481|Caenorhabditis elegans Hypothetical
protein ZK1321.2a protein.
Length = 481
Score = 33.5 bits (73), Expect = 0.15
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -1
Query: 342 FAMIQQTCCVYGDLQQFQSFGQILGSICGLISRRVNPLPARTLV 211
F ++ T YGDL FG+++G +C +I LP +V
Sbjct: 410 FVLVTMTTVGYGDLVPLSPFGKVVGGMCAMIGVLTLALPVPIIV 453
>Z68010-3|CAA92011.1| 558|Caenorhabditis elegans Hypothetical
protein R07A4.1 protein.
Length = 558
Score = 32.3 bits (70), Expect = 0.35
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = -1
Query: 342 FAMIQQTCCVYGDLQQFQSFGQILGSICGLISRRVNPLPARTLV 211
+A+ T YGD+ SFG+++GS+C ++ LP +V
Sbjct: 399 WAICTMTTVGYGDMTPHTSFGRLVGSLCAVMGVLTIALPVPVIV 442
>Z67756-4|CAA91765.1| 558|Caenorhabditis elegans Hypothetical
protein R07A4.1 protein.
Length = 558
Score = 32.3 bits (70), Expect = 0.35
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = -1
Query: 342 FAMIQQTCCVYGDLQQFQSFGQILGSICGLISRRVNPLPARTLV 211
+A+ T YGD+ SFG+++GS+C ++ LP +V
Sbjct: 399 WAICTMTTVGYGDMTPHTSFGRLVGSLCAVMGVLTIALPVPVIV 442
>AF005246-1|AAB95119.1| 556|Caenorhabditis elegans
voltage-dependent potassium channelalpha subunit
protein.
Length = 556
Score = 32.3 bits (70), Expect = 0.35
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = -1
Query: 342 FAMIQQTCCVYGDLQQFQSFGQILGSICGLISRRVNPLPARTLV 211
+A+ T YGD+ SFG+++GS+C ++ LP +V
Sbjct: 397 WAICTMTTVGYGDMTPHTSFGRLVGSLCAVMGVLTIALPVPVIV 440
>Z78016-5|CAB01442.2| 479|Caenorhabditis elegans Hypothetical
protein R186.5 protein.
Length = 479
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -1
Query: 342 FAMIQQTCCVYGDLQQFQSFGQILGSICGLISRRVNPLPARTLV 211
+A++ T YGD+ G+++GSIC L LP +V
Sbjct: 369 WAIVTMTTIGYGDITPHTYLGRLIGSICALAGVLTIALPVPVIV 412
>Z82083-6|CAB04974.1| 388|Caenorhabditis elegans Hypothetical
protein ZK1010.8 protein.
Length = 388
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/32 (43%), Positives = 23/32 (71%), Gaps = 2/32 (6%)
Frame = -1
Query: 156 RGAT-ALAFF-ILFCFLRYRRAGWLNQVLTNL 67
RGAT A+A + I++CF+++ GW QV+ N+
Sbjct: 9 RGATIAIAVWNIIYCFIQFGILGWQFQVVKNI 40
>Z81082-6|CAB03098.1| 279|Caenorhabditis elegans Hypothetical
protein F42G4.6 protein.
Length = 279
Score = 28.7 bits (61), Expect = 4.3
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = +3
Query: 429 EERKLATQLRGPLMPVQQPAPKSVARPS--LKMKRTSKLINT*EELAPLPNSS 581
EE+KLA +L L ++ PKS R S K K++ + +T E LA + S+
Sbjct: 90 EEQKLADKLAAKLRKLEVKEPKSKKRGSKERKKKKSEPVESTYESLATIEGST 142
>AL132898-13|CAB60948.2| 152|Caenorhabditis elegans Hypothetical
protein Y59A8B.20 protein.
Length = 152
Score = 28.7 bits (61), Expect = 4.3
Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +2
Query: 188 RCPTVRYHTKVRAGRGFT-LREIRPQIEPSICPN-DWNCCRSP*TQQVC 328
R P + H R FT + P I P CP D+N RSP T+QVC
Sbjct: 99 RDPAQKVHRWFRRVNRFTNTDQCEPYIFP-YCPELDFNLWRSPRTKQVC 146
>AL034543-5|CAA22519.1| 279|Caenorhabditis elegans Hypothetical
protein F42G4.6 protein.
Length = 279
Score = 28.7 bits (61), Expect = 4.3
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = +3
Query: 429 EERKLATQLRGPLMPVQQPAPKSVARPS--LKMKRTSKLINT*EELAPLPNSS 581
EE+KLA +L L ++ PKS R S K K++ + +T E LA + S+
Sbjct: 90 EEQKLADKLAAKLRKLEVKEPKSKKRGSKERKKKKSEPVESTYESLATIEGST 142
>AL034543-1|CAA22516.1| 243|Caenorhabditis elegans Hypothetical
protein Y81G3A.1 protein.
Length = 243
Score = 28.7 bits (61), Expect = 4.3
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = +3
Query: 429 EERKLATQLRGPLMPVQQPAPKSVARPS--LKMKRTSKLINT*EELAPLPNSS 581
EE+KLA +L L ++ PKS R S K K++ + +T E LA + S+
Sbjct: 90 EEQKLADKLAAKLRKLEVKEPKSKKRGSKERKKKKSEPVESTYESLATIEGST 142
>Z54327-13|CAE48494.1| 619|Caenorhabditis elegans Hypothetical
protein F14F11.1h protein.
Length = 619
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -1
Query: 312 YGDLQQFQSFGQILGSICGLISRRVNPLPARTLV 211
+GDL S G+++GS+C L+ LP +V
Sbjct: 477 FGDLVPQTSLGRLVGSVCALMGVLTIALPVPVIV 510
>Z54307-9|CAE48498.1| 619|Caenorhabditis elegans Hypothetical
protein F14F11.1h protein.
Length = 619
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -1
Query: 312 YGDLQQFQSFGQILGSICGLISRRVNPLPARTLV 211
+GDL S G+++GS+C L+ LP +V
Sbjct: 477 FGDLVPQTSLGRLVGSVCALMGVLTIALPVPVIV 510
>AC084197-25|AAK68591.1| 609|Caenorhabditis elegans Hypothetical
protein Y73B6BL.19 protein.
Length = 609
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = -1
Query: 342 FAMIQQTCCVYGDLQQFQSFGQILGSICGLISRRVNPLPARTLV 211
+ ++ T YGD+ G+I+G +C L V LP +V
Sbjct: 364 YTIVTLTTLGYGDMVPSTIMGKIVGGVCSLSGVLVIALPVPVIV 407
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,719,698
Number of Sequences: 27780
Number of extensions: 299789
Number of successful extensions: 820
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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