Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00003
         (711 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.53 
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    25   0.93 
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    25   0.93 
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            23   3.8  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    22   5.0  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.4 bits (53), Expect = 0.53
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = -1

Query: 123 FCFLRYRRAGWLNQVLTNLCQSLWKC 46
           FC+ R   A W N V  NL  SL KC
Sbjct: 538 FCYFRRNAATWKNAVRHNL--SLHKC 561


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 24.6 bits (51), Expect = 0.93
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -1

Query: 276 ILGSICGLISRRVNPLPARTLVWYRTVGHRTI 181
           IL   CG  S  +N  PAR +   R+V  +TI
Sbjct: 300 ILVDDCGCNSTMLNENPARVMACMRSVDAKTI 331


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 24.6 bits (51), Expect = 0.93
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -1

Query: 276 ILGSICGLISRRVNPLPARTLVWYRTVGHRTI 181
           IL   CG  S  +N  PAR +   R+V  +TI
Sbjct: 300 ILVDDCGCNSTMLNENPARVMACMRSVDAKTI 331


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = +2

Query: 251 IRPQIEPSICPNDWNC 298
           + P I  +IC N W C
Sbjct: 365 LSPSIHDNICSNGWIC 380


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +1

Query: 148 SSTSCSWAVTSY 183
           S + C+W +TSY
Sbjct: 66  SGSKCTWTITSY 77


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,465
Number of Sequences: 438
Number of extensions: 3682
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)