Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00002
(719 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 163 2e-41
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 107 2e-24
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 101 1e-22
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 84 2e-17
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 54 3e-08
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 53 4e-08
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 52 8e-08
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 49 6e-07
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 45 1e-05
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 36 0.008
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 32 0.072
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 31 0.13
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 29 0.51
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom... 29 0.67
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 28 1.2
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur... 27 2.7
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 27 2.7
SPCC736.02 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 27 3.6
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 26 4.7
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 26 4.7
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch... 26 4.7
SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyce... 26 4.7
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ... 26 4.7
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ... 26 6.2
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 6.2
SPBC1271.02 |stt3||oligosaccharyltransferase subunit Stt3|Schizo... 26 6.2
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo... 25 8.2
SPBC530.14c |dsk1||SR protein-specific kinase Dsk1|Schizosacchar... 25 8.2
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 25 8.2
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 163 bits (397), Expect = 2e-41
Identities = 77/84 (91%), Positives = 81/84 (96%)
Frame = +2
Query: 2 ANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPH 181
+NREKMTQI+FETFN PA YVAIQAVLSLYASGRTTGIVLDSGDGV+HTVPIYEGYALPH
Sbjct: 114 SNREKMTQIIFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPH 173
Query: 182 AILRLDLAGRDLTDYLMKILTERG 253
AI+RLDLAGRDLTDYLMKIL ERG
Sbjct: 174 AIMRLDLAGRDLTDYLMKILMERG 197
Score = 153 bits (372), Expect = 2e-38
Identities = 73/84 (86%), Positives = 77/84 (91%)
Frame = +1
Query: 256 SFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCP 435
+F+TTAEREIVRDIKEKLCYVALDFEQE+ TAA SSSLEKSYELPDGQVITIGNERFR P
Sbjct: 199 TFSTTAEREIVRDIKEKLCYVALDFEQELQTAAQSSSLEKSYELPDGQVITIGNERFRAP 258
Query: 436 EALFQPSFLGMEACGIHETTYNSI 507
EALFQPS LG+E GIHE TYNSI
Sbjct: 259 EALFQPSALGLENAGIHEATYNSI 282
Score = 95.9 bits (228), Expect = 5e-21
Identities = 47/69 (68%), Positives = 54/69 (78%), Gaps = 1/69 (1%)
Frame = +3
Query: 510 KCDVDIRKDLYANTVLSGGTTCTLE-SPTVCKRNHSSRPSTMKIKIIAPPERKYSVWIGG 686
KCDVDIRKDLY N V+SGGTT + + K + PS+MK+KI+APPERKYSVWIGG
Sbjct: 284 KCDVDIRKDLYGNVVMSGGTTMYPGIADRMQKEIQALAPSSMKVKIVAPPERKYSVWIGG 343
Query: 687 SILASLSTF 713
SILASLSTF
Sbjct: 344 SILASLSTF 352
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 107 bits (257), Expect = 2e-24
Identities = 49/84 (58%), Positives = 63/84 (75%)
Frame = +2
Query: 2 ANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPH 181
ANREKM + MFE + +YVAIQAVLSLYA G ++G+V+DSGDGV+H VP+YE L H
Sbjct: 114 ANREKMCETMFERYGFGGVYVAIQAVLSLYAQGLSSGVVVDSGDGVTHIVPVYESVVLNH 173
Query: 182 AILRLDLAGRDLTDYLMKILTERG 253
+ RLD+AGRD T YL+ +L +G
Sbjct: 174 LVGRLDVAGRDATRYLISLLLRKG 197
Score = 90.6 bits (215), Expect = 2e-19
Identities = 40/91 (43%), Positives = 62/91 (68%)
Frame = +1
Query: 244 RARLSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNER 423
R +F TA+ E VR++KEKLCYV+ D E + + ++ L ++Y LPDG+VI +G+ER
Sbjct: 195 RKGYAFNRTADFETVREMKEKLCYVSYDLELDHKLSEETTVLMRNYTLPDGRVIKVGSER 254
Query: 424 FRCPEALFQPSFLGMEACGIHETTYNSIRSA 516
+ CPE LFQP +G E G+ E +++I++A
Sbjct: 255 YECPECLFQPHLVGSEQPGLSEFIFDTIQAA 285
Score = 41.9 bits (94), Expect = 9e-05
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 12/78 (15%)
Frame = +3
Query: 507 QKCDVDIRKDLYANTVLSGGTTCTLESPTVCKRN----------HS--SRPSTMKIKIIA 650
Q DVDIRK LY VLSGG++ P+ ++ H +R K+KI
Sbjct: 283 QAADVDIRKYLYRAIVLSGGSSMYAGLPSRLEKEIKQLWFERVLHGDPARLPNFKVKIED 342
Query: 651 PPERKYSVWIGGSILASL 704
P R+++V+IGG++LA +
Sbjct: 343 APRRRHAVFIGGAVLADI 360
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 101 bits (241), Expect = 1e-22
Identities = 43/83 (51%), Positives = 64/83 (77%)
Frame = +2
Query: 5 NREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHA 184
N+EK+ + +ET N PA+ ++Q VL+LYAS RTTGIVL+ GDG++H+VPIY+G+++P A
Sbjct: 120 NKEKIAEYFYETLNVPALSFSLQPVLALYASARTTGIVLECGDGLTHSVPIYDGFSIPSA 179
Query: 185 ILRLDLAGRDLTDYLMKILTERG 253
I + ++ GRD+TDYL L + G
Sbjct: 180 IQQEEIGGRDVTDYLQLQLRKSG 202
Score = 85.4 bits (202), Expect = 7e-18
Identities = 39/81 (48%), Positives = 51/81 (62%)
Frame = +1
Query: 265 TTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEAL 444
++AE+EIVR+IKEK CYVA DF E+ + +Y+LPD Q IT+G E F PE L
Sbjct: 207 SSAEKEIVREIKEKCCYVASDFRSEIESWTEHKPQIHTYQLPDNQTITLGTECFSAPEVL 266
Query: 445 FQPSFLGMEACGIHETTYNSI 507
F P +G EA G+H + SI
Sbjct: 267 FNPEMMGSEASGLHIQLFKSI 287
Score = 58.4 bits (135), Expect = 1e-09
Identities = 30/67 (44%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Frame = +3
Query: 516 DVDIRKDLYANTVLSGGTTCTLE-SPTVCKRNHSSRPSTMKIKIIAPPERKYSVWIGGSI 692
D+D+R LY+N VLSGG+T + ++KI A PER ++ W+GGSI
Sbjct: 291 DIDLRSTLYSNIVLSGGSTLLRGFGERFISELRAISGKKNQVKIYASPERMHNAWLGGSI 350
Query: 693 LASLSTF 713
LASLSTF
Sbjct: 351 LASLSTF 357
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 83.8 bits (198), Expect = 2e-17
Identities = 41/90 (45%), Positives = 60/90 (66%), Gaps = 8/90 (8%)
Frame = +2
Query: 5 NREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVSHTVPIY 160
NRE +IMFE+FN +Y+A+QAVL+L AS + TG V+DSGDGV+H +P+
Sbjct: 138 NRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTHIIPVA 197
Query: 161 EGYALPHAILRLDLAGRDLTDYLMKILTER 250
EGY + +I + LAGRD+T ++ +L +R
Sbjct: 198 EGYVIGSSIKTMPLAGRDVTYFVQSLLRDR 227
Score = 36.7 bits (81), Expect = 0.003
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 15/84 (17%)
Frame = +3
Query: 507 QKCDVDIRKDLYANTVLSGGTTCTLE---------SPTVCKRNHSS------RPSTMKIK 641
Q +D+RK LY N VLSGG+T V +R H S + + +
Sbjct: 316 QSSPIDVRKGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVN 375
Query: 642 IIAPPERKYSVWIGGSILASLSTF 713
+I+ ++ +VW GGS+LA F
Sbjct: 376 VISHKRQRNAVWFGGSLLAQTPEF 399
Score = 29.5 bits (63), Expect = 0.51
Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Frame = +1
Query: 295 IKEKLCYVALDFEQEMATAASSSS--LEKSYELPDGQVITI--GNERFRCPEALFQP 453
IKE+ CYV D +E + L+ + E G TI G ERF PE F P
Sbjct: 240 IKEECCYVCPDIVKEFSRFDREPDRYLKYASESITGHSTTIDVGFERFLAPEIFFNP 296
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 53.6 bits (123), Expect = 3e-08
Identities = 24/79 (30%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Frame = +2
Query: 8 REKMTQIMFETFNTPAMYVAIQAVLSLYASGR--TTGIVLDSGDGVSHTVPIYEGYALPH 181
R MT+++FE +N P++ I + S Y + + ++GIVL+ G+ SH +P+ G +
Sbjct: 131 RSTMTELLFELYNAPSVAYGIDGLFSFYHNTKPSSSGIVLNLGNAASHVIPVLNGERILS 190
Query: 182 AILRLDLAGRDLTDYLMKI 238
R+ G + YL+K+
Sbjct: 191 EAKRISWGGSQSSSYLLKL 209
Score = 29.1 bits (62), Expect = 0.67
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 418 ERFRCPEALFQPSFLGMEACGIHE 489
E+ R PE +F PS +G++ GI E
Sbjct: 594 EQIRVPEVIFSPSIVGIDQAGILE 617
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 53.2 bits (122), Expect = 4e-08
Identities = 28/81 (34%), Positives = 42/81 (51%)
Frame = +2
Query: 5 NREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHA 184
+RE TQ FE P +A + ++ LYA G G+V+D G + PI +G + A
Sbjct: 161 DRELATQFFFEECQVPGFTIAYEPLMGLYAIGILHGLVIDIGYEKTDITPILDGQIIFTA 220
Query: 185 ILRLDLAGRDLTDYLMKILTE 247
+L L GR +T +L +L E
Sbjct: 221 TQQLPLGGRYMTQHLQNLLRE 241
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 52.0 bits (119), Expect = 8e-08
Identities = 27/88 (30%), Positives = 43/88 (48%)
Frame = +2
Query: 5 NREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHA 184
NR K + MFE+ PA Y+A Q + +ASG+ T ++D G S IY+G+ L
Sbjct: 113 NRVKTLETMFESLRCPATYLAKQETCAAFASGKGTACLVDIGAERSSVSAIYDGFVLQKG 172
Query: 185 ILRLDLAGRDLTDYLMKILTERGSRSLP 268
+G + D L + L ++ +P
Sbjct: 173 YQVQHFSGNAINDILAQTLRDKNFEVMP 200
Score = 48.8 bits (111), Expect = 8e-07
Identities = 30/73 (41%), Positives = 46/73 (63%), Gaps = 5/73 (6%)
Frame = +3
Query: 510 KCDVDIRKDLYANTVLSGGTTCTLESPTVCKRNHSSR--PSTMKIKIIAPP---ERKYSV 674
+CDVDIR L N ++ GGT+ ++ ++ +N S+ P + ++KI A ER Y+
Sbjct: 337 ECDVDIRASLLNNVIVCGGTSL-MQGFSLRLQNELSKLYPGS-RLKIHASGHVVERSYAS 394
Query: 675 WIGGSILASLSTF 713
W+GGSIL+SL TF
Sbjct: 395 WLGGSILSSLGTF 407
Score = 33.1 bits (72), Expect = 0.041
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +1
Query: 349 AASSSSLEKSYELPDGQVITIGNERFRCPEALFQP 453
++ ++ E +E PDG + G ER++ PE LF P
Sbjct: 254 SSETTIAESEFEFPDGSRMMFGAERYQIPEHLFVP 288
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 49.2 bits (112), Expect = 6e-07
Identities = 34/98 (34%), Positives = 46/98 (46%), Gaps = 20/98 (20%)
Frame = +1
Query: 274 EREIVRDIKEKLCYVALDFEQEMATAASS--SSLEKSYELPD------------------ 393
E IV +IKE +CYV+ +F+++M S LE Y LPD
Sbjct: 211 ETYIVNEIKESVCYVSQNFKEDMEICHEKPRSKLEICYALPDYSTGKHGYIVRDINQKIE 270
Query: 394 GQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSI 507
QV+ + NERF PE LF PS + + GI E S+
Sbjct: 271 QQVLNLSNERFMIPELLFSPSDIEIREAGIPEAVMQSV 308
Score = 38.7 bits (86), Expect = 8e-04
Identities = 15/46 (32%), Positives = 30/46 (65%)
Frame = +2
Query: 113 IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTER 250
+V+DSG +H +P+ + A+ R+D+ G+ LT+YL ++++ R
Sbjct: 159 LVIDSGYSFTHIIPVIDFSVQEQAVKRVDVGGKLLTNYLKEVISYR 204
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 45.2 bits (102), Expect = 1e-05
Identities = 32/93 (34%), Positives = 44/93 (47%), Gaps = 9/93 (9%)
Frame = +1
Query: 256 SFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCP 435
S+ +R ++ + KE + V LD + A A+S + K +E PDG G ERFR
Sbjct: 243 SYEIFQKRRVIEEWKESVLDV-LDTPFDEAKASSRNP--KPFEFPDGVTHKFGQERFRIS 299
Query: 436 EALFQPSFLGMEAC---------GIHETTYNSI 507
E LF PSF + G+HE Y SI
Sbjct: 300 EILFNPSFSASRSAETTPPQGSVGLHELVYQSI 332
Score = 33.9 bits (74), Expect = 0.023
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Frame = +3
Query: 513 CDVDIRKDLYANTVLSGGTTCT--LESPTVCKRNHSSRPSTMKIKIIAPPER-KYSVWIG 683
CD ++R L N V++GGT+ L + + S + + +VW G
Sbjct: 335 CDSELRSPLLNNIVVTGGTSLIPGLSERLQAEVQRLATGSRINVHTAETASATSNAVWFG 394
Query: 684 GSILASLSTF 713
GSILASL F
Sbjct: 395 GSILASLDNF 404
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 35.5 bits (78), Expect = 0.008
Identities = 17/77 (22%), Positives = 40/77 (51%)
Frame = +2
Query: 11 EKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAIL 190
EK+ I+F + + +++ + + +G + V+D G + + EG +P++ +
Sbjct: 260 EKILDILFFDLHFGKAAIVQESLCTSFGAGMSAACVVDMGAQKTSISCVEEGVVVPNSRI 319
Query: 191 RLDLAGRDLTDYLMKIL 241
+++ G D+T MK+L
Sbjct: 320 KINYGGDDITLLFMKLL 336
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 32.3 bits (70), Expect = 0.072
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = +3
Query: 54 PCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSPTPS 188
P T+P P T PV P S P+ P P PS++ P PS
Sbjct: 1037 PSTAPPVPIPTSTPPV-PKSSSGAPSAPPPVPAPSSEIPSIPAPS 1080
Score = 28.3 bits (60), Expect = 1.2
Identities = 18/51 (35%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
Frame = +3
Query: 51 PPCTSPSKPCSRCTRPVVPPVSCWTP-----ATVSPTPCPSTKDTHSPTPS 188
PP +P P P VPP S P A + P P P+ K P PS
Sbjct: 1193 PPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPS 1243
Score = 26.6 bits (56), Expect = 3.6
Identities = 17/48 (35%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Frame = +3
Query: 51 PPCTSPSKPCSRCTRP--VVPPVSCWTPATVSPTPCPSTKDTHSPTPS 188
PP PS +P VPPV P+ P P PS P PS
Sbjct: 1092 PPVPKPSVAAPPVPKPSVAVPPVPA--PSGAPPVPKPSVAAPPVPVPS 1137
Score = 25.8 bits (54), Expect = 6.2
Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Frame = +3
Query: 51 PPCTSPSKPCSRCTRPV--VPPVSCWTPATVSPTPCPSTKDTHSPTPS 188
PP +PS +P VPPV P+ P P PS P PS
Sbjct: 1169 PPVPAPSSGIPPVPKPAAGVPPVP--PPSEAPPVPKPSVGVPPVPPPS 1214
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 31.5 bits (68), Expect = 0.13
Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +3
Query: 27 SCSKHSTRPPCTSPSKPCSRCTRPVVPPVS-CWTPATVSPTPCPSTKDTHSPTPS 188
SC+ ++ PP T S S P VPP S T + PT ST SP P+
Sbjct: 171 SCTTSTSIPP-TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPT 224
Score = 30.3 bits (65), Expect = 0.29
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +3
Query: 27 SCSKHSTRPPCTSPSKPCSRCTRPVVPPVS-CWTPATVSPTPCPSTKDTHSPTPS 188
SC+ ++ PP T S S P VPP S T + PT ST +P P+
Sbjct: 114 SCTTSTSIPP-TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSNPLPT 167
Score = 27.9 bits (59), Expect = 1.5
Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Frame = +3
Query: 27 SCSKHSTRPPCTSPSKPCSRCTRPVVPPVS-CWTPATVSPTPCPSTKDTHSPTPS 188
SC+ ++ P T S S P VPP S T + PT ST SP P+
Sbjct: 228 SCTTSTSIP--TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPT 280
Score = 27.9 bits (59), Expect = 1.5
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = +3
Query: 21 PRSCSKHSTRPPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSPTPS 188
P S S ST PP S S + + + SC T ++ PT +T T + P+
Sbjct: 361 PTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIPPTGNSTTPVTPTVPPT 416
Score = 27.9 bits (59), Expect = 1.5
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +3
Query: 27 SCSKHSTRPPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPC-PSTKDTHSPTP 185
SC+ ++ PP + + P + P VPP S TP T T C ST ++ TP
Sbjct: 392 SCTTSTSIPPTGNSTTPVT----PTVPPTSSSTPLTT--TNCTTSTSVPYTSTP 439
Score = 26.6 bits (56), Expect = 3.6
Identities = 17/56 (30%), Positives = 24/56 (42%)
Frame = +3
Query: 21 PRSCSKHSTRPPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSPTPS 188
P S S ST PP S S + + SC T ++ PT +T T + P+
Sbjct: 307 PTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPVTPTVPPT 362
Score = 25.8 bits (54), Expect = 6.2
Identities = 18/56 (32%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Frame = +3
Query: 21 PRSCSKHSTRP-PCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSPTP 185
P S S T P S S C+ T +PP T P ST T +P P
Sbjct: 319 PASTSSTGTSSSPLPSTSTSCTTSTS--IPPTGNSTTPVTPTVPPTSTSSTSTPPP 372
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 29.5 bits (63), Expect = 0.51
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +3
Query: 75 PCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSP 179
PC+ + PPV+C TP P C K H P
Sbjct: 621 PCTCGRTRLYPPVACGTPIPDCPYLCVLPKSCHHP 655
>SPBC30B4.04c |sol1||SWI/SNF complex subunit
Sol1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 865
Score = 29.1 bits (62), Expect = 0.67
Identities = 22/68 (32%), Positives = 33/68 (48%)
Frame = +2
Query: 251 GSRSLPPPSGKSFVTSRRSCATSLLTSSRKWPPLHPAAPSRSLTNFPTVRSSLSETKDSV 430
GS PS +F +R S A SS + P +P+AP+R PTV++S S
Sbjct: 325 GSLHSKSPS-PAFTANRFSPAAPTTVSSERNAPPYPSAPTRPTP--PTVQTSSSAAPVDS 381
Query: 431 AQRLSSNP 454
A+ ++ P
Sbjct: 382 AEPVAYQP 389
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 28.3 bits (60), Expect = 1.2
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Frame = +2
Query: 260 SLPPPSGKSFVTSRRSCATSLLTSSR--KWPPLHPAAPSRSLTNFPTVRSSLSETKDSVA 433
S P S S V+S A S L S+ + PPL P P S + + ++ S++ + A
Sbjct: 148 SPPSTSTSSIVSSSYGDAPSYLAPSKPNRSPPLKPEDPFASFNSSASAIAAASKSAAASA 207
Query: 434 QRLSSN 451
LSS+
Sbjct: 208 SALSSD 213
>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 398
Score = 27.1 bits (57), Expect = 2.7
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 75 PCSRCTRPVVPPVSCWTPATVSPTPCPST 161
P SR T+P+ S +P VSP PST
Sbjct: 262 PVSRLTQPLPSLASTASPQQVSPPAAPST 290
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 27.1 bits (57), Expect = 2.7
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +3
Query: 51 PPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPS 158
PP P + T PV PV+ A P P P+
Sbjct: 367 PPPVMPQPAAAAVTTPVAAPVAAAAAAVPVPPPAPA 402
>SPCC736.02 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 286
Score = 26.6 bits (56), Expect = 3.6
Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Frame = +1
Query: 202 SRSRPHRLP--HEDPHRARLSFTTT-AEREIVRDIKEKLC--YVALDFEQEMATAASSSS 366
SRS HRL + P + FT + + I+ I+ L Y L ++ S
Sbjct: 61 SRSLRHRLSLRNNTPIFMPIDFTLSMVPKSIILSIQRGLLRRYFTLQILTKIDELVISGF 120
Query: 367 LEKS--YELPDGQVITIGNERFRCPEALFQPS 456
++KS ++ DG+VI G+E F LF P+
Sbjct: 121 VKKSPNEDIKDGRVIHAGHEGFIPKRILFLPN 152
>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 26.2 bits (55), Expect = 4.7
Identities = 18/51 (35%), Positives = 21/51 (41%)
Frame = +1
Query: 91 RVRSYHRYRAGLRRRCLPHRAHLRRIRTPPRHPASGLSRSRPHRLPHEDPH 243
R RS HR+ G RR P+R HL R RH + R R H
Sbjct: 142 RTRSNHRH--GSHRRHEPYRTHLSRHH---RHSTTNYHSKRDDRYERRREH 187
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 26.2 bits (55), Expect = 4.7
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = +3
Query: 3 PTERR*PRSCSKHSTRPPCTSPSKPCSRCTRPVVPPVS-CWTPATVSPTPCPSTKDTHSP 179
PT + +S P SP+ P T P P S ++P + S +P T ++SP
Sbjct: 1580 PTSPSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSP---TSPSYSP 1636
Query: 180 T 182
T
Sbjct: 1637 T 1637
>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 26.2 bits (55), Expect = 4.7
Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Frame = +2
Query: 353 HPAAPSRSLTNFPTVRSSLSETKDSV--AQRLSSNPRSWVWKLAASTRPHITPSEVRRGH 526
HPA+ SLTN ++ + + D + S +PR K P T +E+ +
Sbjct: 131 HPASVENSLTNVNSIHAQPTTISDMIDLTDETSYDPRK--QKFEQGKNPSTTNAEIEKEE 188
Query: 527 P 529
P
Sbjct: 189 P 189
>SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 536
Score = 26.2 bits (55), Expect = 4.7
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = -1
Query: 689 RSTDPYGVLPLWRSNDLNLHCRWARAVIPFAYGRRF 582
R T+ VLPL +DL C V+ FA RRF
Sbjct: 501 RDTNANKVLPLNNVDDLRKACSQESGVLLFAERRRF 536
>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 886
Score = 26.2 bits (55), Expect = 4.7
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
Frame = +2
Query: 263 LPPPSGKSFVTSRRSCATSLLTSSRKWPPLHPA-AP---SRSLTNFPTVRSSLSETKDSV 430
+PP G + +TSR S SS+ L P +P SR ++ P++ SS+ D
Sbjct: 233 VPPAHGSTSMTSRSKLDDSTDNSSKPRTSLQPGESPMKSSRDISRKPSMASSVLSPSDYF 292
Query: 431 AQ--RLSSNP 454
Q R S P
Sbjct: 293 PQHRRFQSAP 302
>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1429
Score = 25.8 bits (54), Expect = 6.2
Identities = 21/75 (28%), Positives = 35/75 (46%)
Frame = +2
Query: 236 ILTERGSRSLPPPSGKSFVTSRRSCATSLLTSSRKWPPLHPAAPSRSLTNFPTVRSSLSE 415
+++ER S S +G + + S ++ TS + PP + + SL N P RSS E
Sbjct: 19 VVSERASSS--GVNGTNGGMKQVSPVSTARTSIARRPPSTVGSQTGSLVNAPPKRSSGIE 76
Query: 416 TKDSVAQRLSSNPRS 460
D V + P++
Sbjct: 77 RFDHVTGTAENRPQT 91
>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 636
Score = 25.8 bits (54), Expect = 6.2
Identities = 17/62 (27%), Positives = 27/62 (43%)
Frame = +2
Query: 344 PPLHPAAPSRSLTNFPTVRSSLSETKDSVAQRLSSNPRSWVWKLAASTRPHITPSEVRRG 523
PP+ +PS SL P S + + S R ++ +S + K + P T S R+
Sbjct: 217 PPIEEYSPSVSLPTSPVAEESYNNVQRSSTVRNNTTQKSVLKKPSRKMSPAYT-SSYRQN 275
Query: 524 HP 529
P
Sbjct: 276 SP 277
>SPBC1271.02 |stt3||oligosaccharyltransferase subunit
Stt3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 752
Score = 25.8 bits (54), Expect = 6.2
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +1
Query: 187 PASGLSRSRPHRLPHEDPHRARLSFTTTAEREIVRDIKEK 306
P G R+R +LP +DP + T +VR K K
Sbjct: 677 PNQGYDRARNQKLPSKDPQLFTIEEAFTTVHHLVRLYKVK 716
>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1010
Score = 25.4 bits (53), Expect = 8.2
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = -3
Query: 408 SDDLTVGKFVRLLEGAAGCSGGHFLLEVKSDVAQLLL 298
+D VG+ L+ GAAG S GHF EV + + +LL
Sbjct: 350 ADSTFVGRAASLV-GAAGQSQGHF-TEVLNGIGTILL 384
>SPBC530.14c |dsk1||SR protein-specific kinase
Dsk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 25.4 bits (53), Expect = 8.2
Identities = 15/55 (27%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Frame = +2
Query: 299 RRSCATSLLTSSRKWPPLHPAAPSRS-LTNFPTVRSSLSETKDSVAQRLSSNPRS 460
R++ A + +S+ + P++P S L+ FP++ ++SE +Q+ +S+P S
Sbjct: 276 RKTFAKNPTKNSKPAGQVIPSSPFTSTLSRFPSLEGAVSEISLRDSQKHNSHPNS 330
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.4 bits (53), Expect = 8.2
Identities = 18/50 (36%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Frame = +3
Query: 69 SKPCSRCTRPVVPPVSCWT---PATVSPTPCPSTKDTHSPTPSCVWT*PV 209
S+ S T P PP + T PA SP P + H PT S PV
Sbjct: 899 SRTSSVSTLPPPPPTASMTASAPAIASPPPPKVGETYHPPTASGTRVPPV 948
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,304,499
Number of Sequences: 5004
Number of extensions: 73603
Number of successful extensions: 359
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 344
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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