Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00002
         (719 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.             122   3e-30
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    25   0.54 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   2.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.8  
EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate c...    21   8.9  

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score =  122 bits (295), Expect = 3e-30
 Identities = 57/57 (100%), Positives = 57/57 (100%)
 Frame = +1

Query: 337 EMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSI 507
           EMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSI
Sbjct: 1   EMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSI 57



 Score =  100 bits (240), Expect = 1e-23
 Identities = 52/69 (75%), Positives = 56/69 (81%), Gaps = 1/69 (1%)
 Frame = +3

Query: 510 KCDVDIRKDLYANTVLSGGTTCTLE-SPTVCKRNHSSRPSTMKIKIIAPPERKYSVWIGG 686
           KCDVDIRKDLYANTVLSGGTT     +  + K   +  PSTMKIKIIAPPE+KYSVWIGG
Sbjct: 59  KCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPEKKYSVWIGG 118

Query: 687 SILASLSTF 713
           SILASLSTF
Sbjct: 119 SILASLSTF 127


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 25.4 bits (53), Expect = 0.54
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -2

Query: 592 VGDSRVHVVPPDNTVLAYKSLRMSTSHF*W 503
           +G  R+H V        Y++LR+ T +F W
Sbjct: 38  LGPQRIHTVRTRGGNKKYRALRLDTGNFSW 67


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 11/38 (28%), Positives = 16/38 (42%)
 Frame = +2

Query: 344 PPLHPAAPSRSLTNFPTVRSSLSETKDSVAQRLSSNPR 457
           PP    +     +  P   S LS T  ++A+ L   PR
Sbjct: 678 PPARSPSSQAQASQCPQTASLLSSTHSTLARSLMEGPR 715


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +1

Query: 85  AVRVRSYHRYRAGLRRRCLPHRAHLRRIRTPPRHPASGLSRSRP 216
           ++  +++HR        C P   +L +I + P HP +  S S P
Sbjct: 62  SLTAQAHHRLYPAFSSSCDPVPGNLEQIGSRPLHPPAS-STSLP 104


>EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate
           carboxykinase protein.
          Length = 118

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -2

Query: 145 VGDTVAGVQHDTGGTTGRVQREHGLDGDVHG 53
           VGD +A ++ D  G    +  E+G  G   G
Sbjct: 42  VGDDIAWMKFDKEGRLRAINPEYGFFGVAPG 72


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 232,120
Number of Sequences: 438
Number of extensions: 5321
Number of successful extensions: 25
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)