Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00001
(615 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p... 102 4e-23
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p... 30 0.31
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 28 0.93
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce... 26 3.8
SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 3.8
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c... 26 3.8
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce... 25 6.6
SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces ... 25 6.6
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 25 8.7
SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc... 25 8.7
>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 536
Score = 102 bits (245), Expect = 4e-23
Identities = 50/79 (63%), Positives = 62/79 (78%), Gaps = 1/79 (1%)
Frame = +2
Query: 344 QGNGLNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGN-L*WQG 520
+G LNLE D VG V+FGND+L++EG++VKRT IVDVPVGE +LGRVVDALGN + +G
Sbjct: 88 KGMALNLEADTVGCVLFGNDRLVREGEVVKRTRHIVDVPVGEALLGRVVDALGNPIDGKG 147
Query: 521 TIDTKSRMRVGIKAPGIIP 577
I T R RV +KAPGI+P
Sbjct: 148 PIKTTERRRVQLKAPGILP 166
Score = 42.3 bits (95), Expect = 5e-05
Identities = 18/22 (81%), Positives = 21/22 (95%)
Frame = +3
Query: 294 GLKNIQAEEMVEFSSGLKGMAL 359
GL N+QAEE+VEFSSG+KGMAL
Sbjct: 71 GLSNVQAEELVEFSSGIKGMAL 92
Score = 26.2 bits (55), Expect = 3.8
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = +1
Query: 256 RVLSIGDGIARV 291
RVLSIGDGIAR+
Sbjct: 58 RVLSIGDGIARI 69
>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 525
Score = 29.9 bits (64), Expect = 0.31
Identities = 13/40 (32%), Positives = 25/40 (62%)
Frame = +2
Query: 383 VVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALG 502
+ + G + L++ G V TG+ + +PVG LGR+++ +G
Sbjct: 108 IAMDGTEGLVR-GTAVIDTGSPISIPVGPGTLGRIMNVIG 146
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 28.3 bits (60), Expect = 0.93
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = -1
Query: 567 PGALIPTLIRDFVSIVPCHHRFPKASTTRPRICSPTGTSTIAP 439
P AL P++ + P R P S TRP+I P ST P
Sbjct: 1043 PSALSPSVTPQ---LPPVSSRLPPVSATRPQIPQPPPVSTALP 1082
>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 26.2 bits (55), Expect = 3.8
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = -2
Query: 314 SLDVLQAITRAIPSPMLKTRQSLLDQPWARLQGSSLRGWWRSRQLCGWLRH 162
+L + A T P +L+TR LD P +R WRS GW ++
Sbjct: 294 TLSKIAASTVTYPHEVLRTRLQSLDAPTHNSATLLIRDIWRSE---GWRKY 341
>SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 230
Score = 26.2 bits (55), Expect = 3.8
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = -1
Query: 330 TPPSPQPGCSSSHNTSDTITNAQDTTVSSRSALGAAPRILSS 205
T QP SSS +S + +++ T+V + S + A+ I+SS
Sbjct: 65 TSHDSQPSTSSSSPSSTSTSSSSGTSVITASDVSASNEIISS 106
>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 819
Score = 26.2 bits (55), Expect = 3.8
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +3
Query: 147 HLENYMSQPPTKLPRSPPSSKRGSLEP 227
H +Y+S P SPP+SK S EP
Sbjct: 113 HQNDYISSPHADFSFSPPASKIQSHEP 139
>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 25.4 bits (53), Expect = 6.6
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = +3
Query: 135 QWPWHLENYMSQPPTKLPRSPPSSK 209
Q P H N+ S PP P SP SSK
Sbjct: 687 QAPEHARNF-SSPPFTRPASPSSSK 710
>SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 390
Score = 25.4 bits (53), Expect = 6.6
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = -1
Query: 486 TRPRICSPTGTSTIAP 439
TRPR+ +P+ +ST+ P
Sbjct: 55 TRPRVSAPSSSSTVVP 70
>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1334
Score = 25.0 bits (52), Expect = 8.7
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +3
Query: 126 RYPQWPWHLENYMSQPPTKLPRSPPSSKR 212
R P+ P + QPP+ P +PP+ +R
Sbjct: 56 RLPRKPLPFRSTSLQPPSSQPPAPPTHQR 84
>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 940
Score = 25.0 bits (52), Expect = 8.7
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -3
Query: 448 DSTSTLDNISFFDKLVITKYYHTHIVRFQVKAIPLRPEENSTI 320
+++S L I F K+V+TK +RFQ + L NS++
Sbjct: 214 NASSLLVIIEFIRKVVLTKADGLEKLRFQSLLVSLTATNNSSV 256
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,515,902
Number of Sequences: 5004
Number of extensions: 50222
Number of successful extensions: 144
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -