Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00001
(615 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0296 + 16461482-16461544,16462087-16463097 31 0.73
06_01_0138 - 1051408-1051625,1052790-1052889,1053724-1054085,105... 31 0.73
07_01_1078 - 9707125-9707640,9708091-9708306,9708312-9709685,970... 30 1.7
12_01_0899 - 8689125-8689383,8689540-8689826 29 2.2
07_03_1690 - 28716998-28717091,28717203-28717897,28718264-287184... 29 2.2
02_05_0142 - 26227792-26228346,26228486-26228608,26229824-262300... 29 2.2
12_02_0305 - 17235832-17236379,17237345-17237444 29 2.9
02_03_0049 + 14421408-14421942,14421988-14422842,14423847-144241... 29 3.9
07_01_0717 - 5482084-5482482 28 5.1
06_03_1119 + 27760412-27760527,27760851-27761010,27761283-277614... 28 5.1
03_05_0916 - 28762214-28762414,28763144-28763242,28763573-287639... 28 5.1
08_02_0361 - 16205476-16205727 28 6.8
08_01_0722 + 6412654-6412860,6413142-6413687,6413745-6413877,641... 28 6.8
05_07_0120 + 27827059-27827814 28 6.8
02_01_0627 + 4708648-4708836,4708975-4709064,4709579-4709664,471... 28 6.8
08_02_0104 + 12404890-12405129,12405244-12405333,12405953-124060... 27 8.9
05_03_0313 + 12200743-12200955,12201238-12201622,12201997-122022... 27 8.9
04_01_0319 - 4291144-4293402 27 8.9
03_06_0376 + 33479776-33479958,33481055-33481236,33481345-334814... 27 8.9
01_06_1355 + 36610390-36610479,36611906-36612063,36612144-366125... 27 8.9
>09_04_0296 + 16461482-16461544,16462087-16463097
Length = 357
Score = 31.1 bits (67), Expect = 0.73
Identities = 19/55 (34%), Positives = 29/55 (52%)
Frame = -1
Query: 330 TPPSPQPGCSSSHNTSDTITNAQDTTVSSRSALGAAPRILSSRMVEISAALWVVE 166
+PP PQP C S+ T+ + T A + S R GA ++ R+ E+ +L VE
Sbjct: 254 SPPVPQPPCMSAAATTTSNTKASERR-SVRFCPGAETSVVRRRVEELVRSLADVE 307
>06_01_0138 -
1051408-1051625,1052790-1052889,1053724-1054085,
1055055-1055079
Length = 234
Score = 31.1 bits (67), Expect = 0.73
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1
Query: 202 PRREDPWSRAQG*SRRDCRVLSIGDGIARV 291
P + PW R Q S+RD +GDG+ ++
Sbjct: 69 PSKRPPWQRPQPPSQRDAPATDVGDGLTKL 98
>07_01_1078 -
9707125-9707640,9708091-9708306,9708312-9709685,
9709704-9710044,9710120-9710198
Length = 841
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +3
Query: 105 LPRCQRWRYPQWPWHLENYMSQPPTKLPRSPPSSKRG 215
+P+ + WR P + QP K P SPP SK+G
Sbjct: 635 MPKNRYWRTPVKSPVPSMKLEQPAQKKPSSPPKSKKG 671
>12_01_0899 - 8689125-8689383,8689540-8689826
Length = 181
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = +3
Query: 108 PRCQRWRYPQWPWHLENYMSQPPTKLPRSPPSSKRGSLEPRPRL 239
P C R P+ PW + +PP PP+ G+ RP L
Sbjct: 38 PPCARLLLPEPPWGMAALPPEPPWGAAAHPPAPHWGAGPSRPAL 81
>07_03_1690 -
28716998-28717091,28717203-28717897,28718264-28718446,
28718552-28719585,28719805-28719978,28720051-28720168,
28720339-28720521,28720647-28720739,28720981-28721166,
28722247-28722507
Length = 1006
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = -1
Query: 363 KLRPFP*GLRRTPPSPQPGCSSSHNTSDTITNAQDT 256
K++ P G R SP+ GCSSS N T N T
Sbjct: 771 KIKTNPIGYIRRRSSPEMGCSSSSNGGITFENTSHT 806
>02_05_0142 -
26227792-26228346,26228486-26228608,26229824-26230084,
26230658-26231116
Length = 465
Score = 29.5 bits (63), Expect = 2.2
Identities = 18/51 (35%), Positives = 24/51 (47%)
Frame = -1
Query: 369 GSKLRPFP*GLRRTPPSPQPGCSSSHNTSDTITNAQDTTVSSRSALGAAPR 217
G K P G PP P SSH+TS ++A T+ S+ + AA R
Sbjct: 16 GKKRPPPHEGPAPPPPPPSALAGSSHSTSTVSSSAVATSQSTEDSSAAAAR 66
>12_02_0305 - 17235832-17236379,17237345-17237444
Length = 215
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +3
Query: 165 SQPPTKLPRSPPSSKRGSLEPRPRLI 242
SQPPT P PP+ GS PR +I
Sbjct: 114 SQPPTIAPTQPPTPSGGSQCPRENVI 139
>02_03_0049 +
14421408-14421942,14421988-14422842,14423847-14424151,
14424469-14424984
Length = 736
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +3
Query: 105 LPRCQRWRYPQWPWHLENYMSQPPTKLPRSPPSSKR 212
+PR + WR P L + QP K P S P SK+
Sbjct: 412 MPRNRYWRTPVKSPVLAKKLEQPAQKRPSSAPKSKK 447
>07_01_0717 - 5482084-5482482
Length = 132
Score = 28.3 bits (60), Expect = 5.1
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = -1
Query: 303 SSSHNTSDTITNAQDTTVSSRSALGAAPRILSSRMVEISAALW 175
++S N++D + AQDT VS RSA A LSS S+++W
Sbjct: 67 AASDNSADRVHRAQDTPVSHRSAGTHAVGELSS---SNSSSMW 106
>06_03_1119 +
27760412-27760527,27760851-27761010,27761283-27761449,
27761525-27761629,27762097-27762864,27762942-27763131,
27763763-27763940,27764106-27764497
Length = 691
Score = 28.3 bits (60), Expect = 5.1
Identities = 15/28 (53%), Positives = 16/28 (57%)
Frame = -2
Query: 530 CRLSLAIIGFPKRLLHAQGSALRRERLR 447
CRLSL IGF +RLL Q L LR
Sbjct: 531 CRLSLTRIGFAERLLWVQMLDLSHNNLR 558
>03_05_0916 -
28762214-28762414,28763144-28763242,28763573-28763998,
28764259-28764501,28764706-28764927,28765392-28765721,
28767380-28767800,28768292-28768404,28769224-28769367,
28769439-28769570,28769802-28770013,28770983-28771505
Length = 1021
Score = 28.3 bits (60), Expect = 5.1
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +2
Query: 329 VLLRPQGNGLNLEPDNVGVVVFGNDKLIKEGDIV 430
V+ P G L L DN+GV V N KLI++G I+
Sbjct: 233 VVALPTGE-LLLGKDNIGVFVDQNGKLIQDGRII 265
>08_02_0361 - 16205476-16205727
Length = 83
Score = 27.9 bits (59), Expect = 6.8
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = -2
Query: 230 ARLQGSSLRGWWRSRQLCGWL 168
A L G + WWR R GWL
Sbjct: 12 ASLGGGGVELWWRRRSAAGWL 32
>08_01_0722 +
6412654-6412860,6413142-6413687,6413745-6413877,
6413917-6414035,6414128-6414883,6415209-6415258,
6415560-6416679
Length = 976
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +3
Query: 105 LPRCQRWRYPQWPWHLENYMSQPPTKLPRSPPSSKRGSLEP 227
+PR + WR P P + Q K P SPP K+ + P
Sbjct: 552 MPRNRYWRLPVKPPIPAKKLEQLAQKKPPSPPKPKKPKVGP 592
>05_07_0120 + 27827059-27827814
Length = 251
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = -1
Query: 333 RTPPSPQPGCSSSHNTSDTITNAQDTTVSSRSALGAAP 220
+ PPSP P S DT +A+ S+ GAAP
Sbjct: 194 KPPPSPPPAPSKKPAKGDTSASAEAPAGSADHPAGAAP 231
>02_01_0627 +
4708648-4708836,4708975-4709064,4709579-4709664,
4710108-4710332,4711251-4711314,4711793-4712491,
4712657-4712764,4712920-4713051,4713183-4713359,
4713920-4713973,4714072-4714134,4714227-4714928,
4715048-4715175,4715563-4715839
Length = 997
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +3
Query: 138 WPWHLENYMSQPPTKLPRSP 197
WP H +NY+S+ T PRSP
Sbjct: 675 WPEHCKNYLSRILTLGPRSP 694
>08_02_0104 +
12404890-12405129,12405244-12405333,12405953-12406036,
12406888-12407132,12409032-12409095,12409270-12409968,
12410063-12410176,12410287-12410418,12410594-12410770,
12411085-12411138,12411230-12411292,12411396-12412307,
12412408-12412535,12413680-12413962
Length = 1094
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +3
Query: 138 WPWHLENYMSQPPTKLPRSP 197
WP H +NY+S+ T PR P
Sbjct: 700 WPEHCKNYLSRVGTLKPRHP 719
>05_03_0313 +
12200743-12200955,12201238-12201622,12201997-12202274,
12202359-12202976
Length = 497
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +3
Query: 105 LPRCQRWRYPQWPWHLENYMSQPPTKLPRSPPSSKR 212
+P+ + W+ P P L + QP K P S P K+
Sbjct: 440 MPKNRYWKMPVEPPILAKKLEQPAQKKPPSAPKPKK 475
>04_01_0319 - 4291144-4293402
Length = 752
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 5/29 (17%)
Frame = -2
Query: 227 RLQGSSLRGWWRSRQL-----CGWLRHVV 156
R SS G+W R+L CGW+RH V
Sbjct: 339 RALASSWTGFWLDRELRPVWGCGWIRHEV 367
>03_06_0376 +
33479776-33479958,33481055-33481236,33481345-33481469,
33481858-33482057,33482629-33482762,33483095-33483158,
33483764-33484441,33484723-33484839
Length = 560
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -3
Query: 490 YYTPKDLLSDGNVYDSTSTLDNISFFD 410
Y+ PKDL S + Y T+ D I++FD
Sbjct: 146 YWGPKDLSSLVDFYKETTGFDPIAYFD 172
>01_06_1355 +
36610390-36610479,36611906-36612063,36612144-36612523,
36612600-36613583,36614228-36614292,36614946-36615024,
36615480-36615529,36616595-36616781,36617922-36617957,
36619226-36619348,36619466-36620386,36620506-36620636
Length = 1067
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/44 (34%), Positives = 18/44 (40%)
Frame = -1
Query: 573 MIPGALIPTLIRDFVSIVPCHHRFPKASTTRPRICSPTGTSTIA 442
MIP I + H F A+ + PRIC P TS A
Sbjct: 6 MIPVFAILAFVASAAQADVVEHTFNVATLSLPRICQPGNTSVTA 49
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,888,722
Number of Sequences: 37544
Number of extensions: 401232
Number of successful extensions: 1483
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1480
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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